Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Reverse (-)

5548550 .. 5570920

Gene Structure 22371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG077900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAAACCAATTCCCCATCATCTTCTTCACCTCCATCGCCCAAATCTAGGAAATTTCTTTACAAGCTGTTCTACATCGTTTTCTCATCAAAAACACGTTTTTTTTTTCCTGTAATTGTACGCAAGTGGGATCAACAAGAGGAGAGATTAGTCAAACTACCACAAGAAGAAGAGGTGGAGCACCCGGTCACTAAGTGGATAGCAGAAATAAATCTGCTAGCAGCCCAAGTTGCAGTTGGGATGGGCATTCCTCTTTGGCAAATTCCTGAGATAAGGCGGTTCTATGGAATGGAACATGGTAGTGGATATGATGCTTGGAGAAAGACGTCAGTGGTTGCCACTCCATTTGACTTTGACAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

121

Amino Acids

14.07

Weight (kDa)

8.92

Isoelectric Point (pI)

64.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	329
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	53, 261
AcyI	GRCGYC	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	48
AflIII	ACRYGT	1 cut(s)	95
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	2 cut(s)	53, 261
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	21
AsuNHI	GCTAGC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	3 cut(s)	25, 43, 235
BcnI	CCSGG	1 cut(s)	185
BfaI	CTAG	2 cut(s)	48, 218
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	301
BmtI	GCTAGC	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	259
BspOI	GCTAGC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	138
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	192, 267
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	233
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	119
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	2 cut(s)	67, 224
CviKI_1	RGCY	2 cut(s)	67, 224
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	2 cut(s)	192, 267
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DraIII	CACNNNGTG	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
FaeI	CATG	1 cut(s)	299
FaiI	YATR	4 cut(s)	285, 297, 309, 364
FatI	CATG	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	48, 218
GluI	GCNGC	1 cut(s)	222
HapII	CCGG	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	299
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	21
Hpy188III	TCNNGA	1 cut(s)	266
HpyCH4IV	ACGT	2 cut(s)	97, 326
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	192, 267
HpySE526I	ACGT	2 cut(s)	97, 326
Hsp92I	GRCGYC	1 cut(s)	326
Hsp92II	CATG	1 cut(s)	299
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	3 cut(s)	123, 198, 279
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	48, 218
MaeII	ACGT	2 cut(s)	97, 326
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	4 cut(s)	15, 18, 179, 182
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	4 cut(s)	10, 53, 114, 261
MnlI	CCTC	4 cut(s)	42, 133, 166, 261
MslI	CAYNNNNRTG	1 cut(s)	300
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	1 cut(s)	130
NheI	GCTAGC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	299
NmuCI	GTSAC	1 cut(s)	187
PctI	GAATGC	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	223
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	300
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	5 cut(s)	34, 69, 100, 177, 329
SfaNI	GCATC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	4 cut(s)	10, 53, 114, 261
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	2 cut(s)	48, 218
StyD4I	CCNGG	1 cut(s)	183
TaiI	ACGT	2 cut(s)	100, 329
TasI	AATT	4 cut(s)	10, 53, 114, 261
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	187
TspRI	CASTG	1 cut(s)	336
XapI	RAATTY	2 cut(s)	53, 261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233
XspI	CTAG	2 cut(s)	48, 218
ZraI	GACGTC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.