Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Forward (+)

19386312 .. 19389182

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGACCTCGACCGAGAGTCCGAGATGGAGGACGTCGTACGACGTCTCACCGCCACACCACGTACCGCAAGAGTTGATTTGTGGGATTGTTACATGTTGCTGTGGGGATGATGGTCAAATTCGAGGATGGAGGTGGAAGGATTCCATACAGTCCGACATGCCTATTAATTTGCAAGAGATAAGGCGGTTCAATGGAATGGAACATGGTAGTGGATATGATGGTTGGAGAAAGACGTCGGTGGTTGCCACTCCATTTGACTTTGACAAGGCAGAATCTAAAAGGCCAAAAAGTCATTGTGTTGCTGTGCATGTAACAAGTGAGGATCCAGATGATGGCTTTAAACCTGCTAGTGGGAAAGTTCAAATGCAAGTGAAACCTGGTTGGCTTGTGGTAGTGGTCGGAGTTTATCGGTTTGGAACCTTCACCTTCGAATGCATTTCAAGGACTTCAACTCGTGCATTTGTACGGGATGTAGTATTTGATGGTCTGTTGATGAGTCGATTGACTAGTGATCCATATCTTGATAAGATTATTTCTGTTTTCTTTCTAGCAATGTGCATGGATGCTACGCATTCTGCAAAGTTAGCTATAGAGGAAAGGCAAACTCAAGGATGTGGGCAAATGTCGACAACATTTTCATTGCTAAGGTTGGTTAAGAGTATGCATGGAAAGTTTTATGCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

228

Amino Acids

25.72

Weight (kDa)

8.11

Isoelectric Point (pI)

54.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	35, 45, 236
Acc36I	ACCTGC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	626
AciI	CCGC	3 cut(s)	50, 65, 184
AclWI	GGATC	3 cut(s)	317, 330, 506
AcsI	RAATTY	1 cut(s)	117
AcyI	GRCGYC	3 cut(s)	32, 42, 233
AfaI	GTAC	3 cut(s)	38, 63, 465
AfiI	CCNNNNNNNGG	2 cut(s)	332, 350
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	4 cut(s)	190, 362, 441, 450
AhdI	GACNNNNNGTC	1 cut(s)	15
AhlI	ACTAGT	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	1 cut(s)	587
AluI	AGCT	1 cut(s)	587
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	3 cut(s)	317, 330, 506
AoxI	GGCC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	117
AseI	ATTAAT	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	39, 415
AsuII	TTCGAA	1 cut(s)	429
BamHI	GGATCC	1 cut(s)	322
BauI	CACGAG	1 cut(s)	453
BccI	CCATC	6 cut(s)	18, 104, 120, 212, 326, 476
BciT130I	CCWGG	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	49
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	3 cut(s)	348, 507, 548
BfmI	CTRYAG	1 cut(s)	588
BfuAI	ACCTGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	378
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmiI	GGNNCC	2 cut(s)	324, 418
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	553
Bpu10I	CCTNAGC	1 cut(s)	644
Bpu14I	TTCGAA	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	591
BsaAI	YACGTR	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	516
BsaHI	GRCGYC	3 cut(s)	32, 42, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 350
Bse3DI	GCAATG	2 cut(s)	558, 638
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	378
BseGI	GGATG	5 cut(s)	112, 131, 475, 568, 617
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	2 cut(s)	332, 350
BseMI	GCAATG	2 cut(s)	558, 638
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	12
BsiWI	CGTACG	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	332, 350
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsmI	GAATGC	2 cut(s)	437, 571
BsnI	GGCC	1 cut(s)	283
Bsp119I	TTCGAA	1 cut(s)	429
Bsp143I	GATC	2 cut(s)	322, 511
BspACI	CCGC	3 cut(s)	50, 65, 184
BspANI	GGCC	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	324, 418
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	3 cut(s)	317, 330, 506
BspT104I	TTCGAA	1 cut(s)	429
BsrDI	GCAATG	2 cut(s)	558, 638
BssMI	GATC	2 cut(s)	322, 511
BssNI	GRCGYC	3 cut(s)	32, 42, 233
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	150
BstACI	GRCGYC	3 cut(s)	32, 42, 233
BstBAI	YACGTR	1 cut(s)	61
BstBI	TTCGAA	1 cut(s)	429
BstDEI	CTNAG	1 cut(s)	644
BstF5I	GGATG	5 cut(s)	112, 131, 475, 568, 617
BstKTI	GATC	2 cut(s)	325, 514
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	2 cut(s)	322, 511
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	584
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	3 cut(s)	96, 160, 311
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	5 cut(s)	112, 131, 475, 568, 617
BveI	ACCTGC	1 cut(s)	352
CsiI	ACCWGGT	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	37, 62, 464
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	6 cut(s)	93, 157, 203, 308, 559, 665
CviJI	RGCY	4 cut(s)	283, 336, 385, 587
CviKI_1	RGCY	4 cut(s)	283, 336, 385, 587
CviQI	GTAC	3 cut(s)	37, 62, 464
DdeI	CTNAG	1 cut(s)	644
DpnI	GATC	2 cut(s)	324, 513
DpnII	GATC	2 cut(s)	322, 511
DraI	TTTAAA	1 cut(s)	340
DriI	GACNNNNNGTC	1 cut(s)	15
Eam1105I	GACNNNNNGTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	376
EcoT22I	ATGCAT	2 cut(s)	437, 666
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	6 cut(s)	96, 160, 206, 311, 562, 668
FatI	CATG	6 cut(s)	92, 156, 202, 307, 558, 664
FblI	GTMKAC	1 cut(s)	626
FokI	GGATG	5 cut(s)	119, 138, 482, 575, 624
FspBI	CTAG	3 cut(s)	348, 507, 548
HaeIII	GGCC	1 cut(s)	283
Hin1I	GRCGYC	3 cut(s)	32, 42, 233
Hin1II	CATG	6 cut(s)	96, 160, 206, 311, 562, 668
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HinfI	GANTC	4 cut(s)	16, 140, 272, 496
HphI	GGTGA	2 cut(s)	39, 415
Hpy166II	GTNNAC	1 cut(s)	627
Hpy188I	TCNGA	3 cut(s)	21, 154, 401
Hpy188III	TCNNGA	2 cut(s)	326, 521
Hpy8I	GTNNAC	1 cut(s)	627
Hpy99I	CGWCG	3 cut(s)	37, 44, 238
HpyAV	CCTTC	3 cut(s)	130, 430, 436
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	4 cut(s)	32, 42, 60, 233
HpyCH4V	TGCA	8 cut(s)	172, 307, 367, 435, 458, 558, 578, 664
HpyF10VI	GCNNNNNNNGC	1 cut(s)	584
HpyF3I	CTNAG	1 cut(s)	644
HpySE526I	ACGT	4 cut(s)	32, 42, 60, 233
Hsp92I	GRCGYC	3 cut(s)	32, 42, 233
Hsp92II	CATG	6 cut(s)	96, 160, 206, 311, 562, 668
Kzo9I	GATC	2 cut(s)	322, 511
LpnPI	CCDG	4 cut(s)	339, 357, 363, 390
LweI	GCATC	1 cut(s)	553
MabI	ACCWGGT	1 cut(s)	376
MaeI	CTAG	3 cut(s)	348, 507, 548
MaeII	ACGT	4 cut(s)	32, 42, 60, 233
MaeIII	GTNAC	2 cut(s)	88, 310
MalI	GATC	2 cut(s)	324, 513
MboI	GATC	2 cut(s)	322, 511
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	2 cut(s)	117, 166
MlyI	GAGTC	2 cut(s)	25, 505
MmeI	TCCRAC	3 cut(s)	177, 203, 379
MnlI	CCTC	6 cut(s)	16, 21, 116, 123, 313, 586
Mph1103I	ATGCAT	2 cut(s)	437, 666
MseI	TTAA	3 cut(s)	165, 339, 654
MslI	CAYNNNNRTG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	378
Mva1269I	GAATGC	2 cut(s)	437, 571
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	584
NdeII	GATC	2 cut(s)	322, 511
NlaIII	CATG	6 cut(s)	96, 160, 206, 311, 562, 668
NlaIV	GGNNCC	2 cut(s)	324, 418
NsiI	ATGCAT	2 cut(s)	437, 666
NspI	RCATGY	3 cut(s)	96, 160, 311
NspV	TTCGAA	1 cut(s)	429
PciI	ACATGT	1 cut(s)	92
PctI	GAATGC	2 cut(s)	437, 571
PfeI	GAWTC	2 cut(s)	140, 272
Pfl23II	CGTACG	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	332
PleI	GAGTC	2 cut(s)	24, 504
PpsI	GAGTC	2 cut(s)	24, 504
Ppu21I	YACGTR	1 cut(s)	61
PscI	ACATGT	1 cut(s)	92
PshBI	ATTAAT	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspLI	CGTACG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	324, 418
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	3 cut(s)	38, 63, 465
RsaNI	GTAC	3 cut(s)	37, 62, 464
RseI	CAYNNNNRTG	1 cut(s)	207
SalI	GTCGAC	1 cut(s)	625
SaqAI	TTAA	3 cut(s)	165, 339, 654
Sau3AI	GATC	2 cut(s)	322, 511
SchI	GAGTC	2 cut(s)	25, 505
ScrFI	CCNGG	1 cut(s)	378
SexAI	ACCWGGT	1 cut(s)	376
SfaNI	GCATC	1 cut(s)	553
SfcI	CTRYAG	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	2 cut(s)	117, 166
SsiI	CCGC	3 cut(s)	50, 65, 184
SspMI	CTAG	3 cut(s)	348, 507, 548
StyD4I	CCNGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	4 cut(s)	35, 45, 63, 236
TaqI	TCGA	5 cut(s)	8, 121, 429, 499, 626
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	117, 166
TfiI	GAWTC	2 cut(s)	140, 272
Tru1I	TTAA	3 cut(s)	165, 339, 654
Tru9I	TTAA	3 cut(s)	165, 339, 654
TspDTI	ATGAA	1 cut(s)	627
Van91I	CCANNNNNTGG	1 cut(s)	332
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	3 cut(s)	96, 160, 311
XmiI	GTMKAC	1 cut(s)	626
XspI	CTAG	3 cut(s)	348, 507, 548
ZraI	GACGTC	3 cut(s)	33, 43, 234
Zsp2I	ATGCAT	2 cut(s)	437, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.