Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Reverse (-)

52011130 .. 52012368

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58527

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGACACTGGCGAGTACTATTTCTTAGAGTTGAACCCTCAGTTGCAGGTGGAGCAGCCGGTCACTAAGTGGATAGCAGAAATAAATCTGCTAGCAACCCAAGTTGCAGTTGGGATGGGCATTCCTCTTTGGCAAATTCCTGAGATAAGGCGGTTCTATGGAATGGAACATGATAGTGGATATGATGCTTGTAGAAAGACGTTAGTGGTTGCCGCTCCATTTGACTTTGACAAGGCAGAATCTAAAAGGCCAAAAGGTCATTGTGTTGCTGTGCGTGTAACAAGTGAGGATCCAGATGATGGCTTTAAACCTGCTAGTGGGAAAGTTCAGGAGCTGAGTTTTAAAAGCAAGCCAAATGTTTGGGCGTACTTTTATGTTAAGGGTTGTGGTAGTGGTCGGAGTTTATCAGTTTGGAACCTTCCTGCTTCTAAATGCATTTCAAGGACTTCAATTCGTGCATCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

155

Amino Acids

17.32

Weight (kDa)

8.33

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_L_D2	PF02786	3 - 44	3.9e-06	Carbamoyl-phosphate synthase L chain, ATP binding domain
Biotin_carb_C	PF02785	91 - 127	3e-06	Biotin carboxylase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc36I	ACCTGC	2 cut(s)	37, 319
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccBSI	CCGCTC	1 cut(s)	215
AciI	CCGC	2 cut(s)	151, 213
AclWI	GGATC	2 cut(s)	284, 297
AcsI	RAATTY	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	69
AfaI	GTAC	2 cut(s)	17, 368
AfiI	CCNNNNNNNGG	2 cut(s)	299, 317
AgsI	TTSAA	3 cut(s)	34, 441, 450
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
AlwI	GGATC	2 cut(s)	284, 297
AlwNI	CAGNNNCTG	1 cut(s)	334
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	135
AsuNHI	GCTAGC	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	2 cut(s)	109, 293
BfaI	CTAG	2 cut(s)	92, 315
BfuAI	ACCTGC	2 cut(s)	37, 319
BisI	GCNGC	2 cut(s)	56, 213
BlsI	GCNGC	2 cut(s)	57, 214
BmcAI	AGTACT	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	291, 416
BmsI	GCATC	1 cut(s)	175
BmtI	GCTAGC	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 317
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	299, 317
BseMII	CTCAG	3 cut(s)	53, 132, 326
BseNI	ACTGG	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	299, 317
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	2 cut(s)	151, 213
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	3 cut(s)	52, 133, 327
BspLI	GGNNCC	2 cut(s)	291, 416
BspMI	ACCTGC	2 cut(s)	37, 319
BspOI	GCTAGC	1 cut(s)	95
BspPI	GGATC	2 cut(s)	284, 297
BsrBI	CCGCTC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	58
BssMI	GATC	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	93, 350
BstDEI	CTNAG	5 cut(s)	25, 39, 66, 141, 335
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	289
BstXI	CCANNNNNNTGG	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	6
BveI	ACCTGC	2 cut(s)	37, 319
Cac8I	GCNNGC	2 cut(s)	93, 350
CaiI	CAGNNNCTG	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	16, 367
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	5 cut(s)	58, 250, 303, 334, 352
CviKI_1	RGCY	5 cut(s)	58, 250, 303, 334, 352
CviQI	GTAC	2 cut(s)	16, 367
DdeI	CTNAG	5 cut(s)	25, 39, 66, 141, 335
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DraI	TTTAAA	2 cut(s)	307, 343
DraIII	CACNNNGTG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	437
FaeI	CATG	1 cut(s)	173
FaiI	YATR	5 cut(s)	159, 171, 183, 375, 466
FatI	CATG	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	56, 213
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	2 cut(s)	56, 213
FspBI	CTAG	2 cut(s)	92, 315
GluI	GCNGC	2 cut(s)	56, 213
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	1 cut(s)	173
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	399
Hpy188III	TCNNGA	3 cut(s)	140, 293, 329
HpyAV	CCTTC	1 cut(s)	428
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	4 cut(s)	46, 107, 435, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	5 cut(s)	25, 39, 66, 141, 335
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	3 cut(s)	52, 220, 331
LpnPI	CCDG	7 cut(s)	32, 72, 153, 306, 314, 324, 435
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	92, 315
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	61, 277
MalI	GATC	1 cut(s)	291
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	1 cut(s)	289
MflI	RGATCY	1 cut(s)	289
MluCI	AATT	2 cut(s)	135, 450
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	3 cut(s)	48, 135, 280
Mph1103I	ATGCAT	1 cut(s)	437
MseI	TTAA	3 cut(s)	306, 342, 378
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	289
NheI	GCTAGC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	2 cut(s)	291, 416
NmuCI	GTSAC	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	437
PaqCI	CACCTGC	1 cut(s)	37
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	239
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	57, 214
PspN4I	GGNNCC	2 cut(s)	291, 416
PstNI	CAGNNNCTG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	2 cut(s)	17, 368
RsaNI	GTAC	2 cut(s)	16, 367
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	306, 342, 378
SatI	GCNGC	2 cut(s)	56, 213
Sau3AI	GATC	1 cut(s)	289
ScaI	AGTACT	1 cut(s)	17
SetI	ASST	6 cut(s)	51, 203, 259, 313, 336, 420
SfaNI	GCATC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	2 cut(s)	135, 450
SsiI	CCGC	2 cut(s)	151, 213
SspMI	CTAG	2 cut(s)	92, 315
TaiI	ACGT	1 cut(s)	203
TasI	AATT	2 cut(s)	135, 450
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	3 cut(s)	306, 342, 378
Tru9I	TTAA	3 cut(s)	306, 342, 378
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	61
TspRI	CASTG	1 cut(s)	13
Van91I	CCANNNNNTGG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	135
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	2 cut(s)	92, 315
ZrmI	AGTACT	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.