Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Forward (+)

54471901 .. 54479490

Gene Structure 7590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG311300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2784 bp

ATGAGCTTGAAGAAGCTCAAAGCTTCAAACTTTGGCCCGTTTCTTGTACTGGGAATCTTAGCTTTGAGCTTGGTTCACTTGGTGCAGAGCCAAGATGTGGATGACTATGATGGAATTGACAACCCTGCAGTTCTTCCATTGATCACTCAGATTGTGTATGGAAGAATTTCAAATGTTACAGCAGTTCTCAGTAGGGAGATTAGCAATCGTTCCAGCTTCTGTGTGAAAGACCCGGAAGCTGATTGGAACCAGGCATTTAATTTTTCGAACAATTTGGAGTTCTTAACTTCATGCATTCAAAAGACTAAAGGAGATATTACGCGGCGCTTGTGTACAGCAGCAGAGATGAAGTTTTATTTCAACAATTTCTTTGTAAAGGCTGAGAGTGCAAATTACTTGAAACCTAACCAGAACTGTAATATAACCTCCTGGGTTTCTGGGTGTGAGCCAGGATGGGCTTGTAGTGTTGGCCAAGATCAGCAGGTTGACCTCAAAAATGCACAGGACGTGCCTCCTAGAACTCAGAACTGCCAGCCTTGTTGTGAGGGTTTCTTTTGTCCCCATGGTCTCACATGCATGATACCTTGCCCATCGGGTGCTTACTGTCCCATGGCAACCCTGAACAGAGCAACCGGTATTTGTGAACCGTACATTTACCAGCTACCTCCTGGGCAACCAAACCATACTTGTGGAGGAGCAAATATATGGGCTGATGTTGTTAGTAGTGGTGAATTATTCTGTTCAGCTGGATCATATTGTCCAACCACTGTGAAAAGAATTCCTTGCAGTAGTGGACATTACTGCCGGATGGGTTCTACAGATGAGAAACGCTGTTTCAAGTTGACTTCCTGTGATGCAAACACTGCAAATCAAAATATTCATGCATACGGGATAATGCTTATTGCAGCTTTGATCACTCTGCTGCTCATTATTTACAATTGTTCTGACCAAGTAATCATCACTAGGGGGAGGAGACTGGCCAAATCTCGGGAGAAAGCAGCCAAAAGTGCAAGGGAAATGGCCAAAGCACGCCAAAGATGGAAAGGTGCAAAAGATGCTGCTAAGAAGCATGCAAGTGGTTTGCAAGCTCATTTATCACGCACATTTTCTCGGAAAAAGGACACTCAAGATCCTGAGAAACTTAAGATTTTGAATGAGCCAAAACCGGACATGGATGATGATCTGCCTATACCTCCACATCCAAGTAGATCAAATGTCTCACCATCCACATCTGTGGCACCAAAGGGAAAGAAAAAGGAACCTAGTGAGCTCATGCAGATTATGCGTAAAATTGAAGATGACCCGGAGAATTATAAAGGTTTCAGTATTGGAGGTGAGGACACAAATGTAGGAAATGTGCCGAAAGGAAAGCAAATACATACTCATACACAAATCTTCGATTATGCTTATGCTCAGATTGAGAAAGAGAAGGCTCAGCAGCAAGACTACAAGGATCTTACCTTCTCTGGGGTGGTTAAAATGGCTACTAACAATGAAGTACGGAAAAGGCCTCTAATTGAGATTTCTTTCAAGGACCTTACACTGACTTTGAAATCAAAAAATAAGCATCTACTGAGGTGTGTAACTGGTAAAATAAAGCCCGGCCGCATTACTGCAGTCATGGGTCCATCAGGGGCTGGAAAAACAACATTTCTTTCTGCCCTAGCTGGAAAAGCGACTGGATGCAATATGACTGGTTTAATTCTTGTAAATGGGAGGAATGTATCAATCCATTCATATAAGAAAATCATAGGTTTTGTGCCGCAAGATGATATTGTGCATGGAAACTTGACCGTGGAAGAGAATCTATGGTTCAGTGCAAAGTGCAGGTTATCAGCGGACTTATCAAAACCAGATAAAGTTCTAGTGGTTGAAAGAGCTATCGAGTCCTTAGGGCTCCAGACGGTACGTGATTCCTTGGTTGGAACAGTAGAAAAGCGAGGGATATCTGGAGGCCAGAGGAAACGTGTAAATGTTGGTTTGGAAATGGTTATGGAACCTTCACTTTTGATTTTGGATGAACCCACATCTGGTTTGGACAGTGCCTCTTCTCAGCTACTTCTTAGAGCACTTAGACGGGAAGCTCTTGAAGGGGTAAACATCTGCATGGTGGTTCACCAACCTAGCTATGCCTTGTTCAAGATGTTTGATGAGTTAGTGCTCCTGGCAAAAGGTGGCCTAACTGTCTATCATGGATCAGCAAAGCAAGTAGAAGAATACTTCTCAAGCCTTGGGATCAATGTCCCAGACCGCATCAACCCTCCGGACCACTACATTGACATTTTGGAGGGTATGGTAACAACAGAAAGAAGTTCAGGAGTGAATTATAGAGATCTTCCCCTCAGATGGATGCTTTATAATGGGTACTCAGTACCCCCCGATATGAGGCCAAGTGCTGCTCAACTTGAATTGCCCTCAATGGATGAAAATTTAATTCATGAAACTAATCCTGCTGGTGCTCAGATAGAGGAACAATCTTTTGCTGAAGAGTTATGGCAAGATGTAAGAACTAATGTGGAGCTGCATCGTGAGAAGATACGTCTCAATTTCTTGAAATCTAAGGATATGTCTAACCGGAGAACTCCAGGTGTATTTCTGCAATACAGATACTTCCTAGGAAGACTTGGTAAGCAGAGACTTAGAGAAGCTCGGATACAGGCAGTAGATTATTTGATTTTATTACTTGCTGGAGCCTGCTTAGGATCACTTGCAAAAGTGAGCGATCAGAACTTTGGTGCACTTGGTTACACATACACCATCATTGCAGTTTGTAAGTACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

927

Amino Acids

102.84

Weight (kDa)

8.83

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	528 - 677	3.1e-25	ABC transporter
ABC2_membrane_7	PF19055	706 - 924	1.5e-104	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1314, 2358
Acc36I	ACCTGC	2 cut(s)	472, 1818
AccB1I	GGYRCC	1 cut(s)	1237
AccB7I	CCANNNNNTGG	1 cut(s)	97
AccII	CGCG	1 cut(s)	322
AccIII	TCCGGA	1 cut(s)	2263
AciI	CCGC	5 cut(s)	322, 1606, 1763, 1838, 2251
AclWI	GGATC	6 cut(s)	757, 1124, 1461, 2203, 2243, 2710
AcoI	YGGCCR	4 cut(s)	469, 978, 1020, 1603
AcsI	RAATTY	3 cut(s)	165, 777, 2428
AcuI	CTGAAG	1 cut(s)	2505
AdeI	CACNNNGTG	1 cut(s)	82
AfaI	GTAC	8 cut(s)	48, 334, 650, 1500, 1908, 2366, 2373, 2777
AfiI	CCNNNNNNNGG	6 cut(s)	97, 987, 1467, 2030, 2346, 2385
AflII	CTTAAG	1 cut(s)	1142
AflIII	ACRYGT	1 cut(s)	1966
AgeI	ACCGGT	1 cut(s)	632
AjiI	CACGTC	1 cut(s)	508
AjnI	CCWGG	6 cut(s)	249, 428, 448, 667, 2163, 2584
AleI	CACNNNNGTG	1 cut(s)	1232
Alw21I	GWGCWC	5 cut(s)	1272, 2071, 2163, 2461, 2740
Alw26I	GTCTC	5 cut(s)	572, 967, 1222, 2546, 2629
Alw44I	GTGCAC	1 cut(s)	2736
AlwI	GGATC	6 cut(s)	757, 1124, 1461, 2203, 2243, 2710
AlwNI	CAGNNNCTG	2 cut(s)	219, 1637
Ama87I	CYCGRG	1 cut(s)	987
Aor13HI	TCCGGA	1 cut(s)	2263
AoxI	GGCC	9 cut(s)	34, 469, 978, 1020, 1508, 1603, 1954, 2176, 2387
ApaLI	GTGCAC	1 cut(s)	2736
ApeKI	GCWGC	8 cut(s)	338, 905, 922, 998, 1058, 1438, 2396, 2521
ApoI	RAATTY	3 cut(s)	165, 777, 2428
AsiGI	ACCGGT	1 cut(s)	632
Asp700I	GAANNNNTTC	1 cut(s)	166
AspA2I	CCTAGG	1 cut(s)	2614
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	4 cut(s)	35, 1534, 1625, 2266
AsuC2I	CCSGG	3 cut(s)	233, 1304, 1602
AsuHPI	GGTGA	4 cut(s)	740, 1212, 1346, 2108
AsuII	TTCGAA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	987
AvaII	GGWCC	3 cut(s)	1534, 1625, 2266
AvrII	CCTAGG	1 cut(s)	2614
AxyI	CCTNAGG	1 cut(s)	1891
BaeGI	GKGCMC	1 cut(s)	2740
BalI	TGGCCA	3 cut(s)	471, 980, 1022
BanI	GGYRCC	1 cut(s)	1237
BanII	GRGCYC	2 cut(s)	1272, 1899
BarI	GAAGNNNNNNTAC	2 cut(s)	2637, 2669
BbsI	GAAGAC	1 cut(s)	2626
Bbv12I	GWGCWC	5 cut(s)	1272, 2071, 2163, 2461, 2740
BbvI	GCAGC	8 cut(s)	350, 909, 917, 1010, 1045, 1450, 2383, 2508
BccI	CCATC	9 cut(s)	104, 447, 598, 802, 1032, 1231, 1636, 2340, 2765
BciT130I	CCWGG	6 cut(s)	251, 430, 450, 669, 2165, 2586
BciVI	GTATCC	1 cut(s)	2646
BclI	TGATCA	2 cut(s)	141, 912
BcnI	CCSGG	3 cut(s)	233, 1304, 1602
BcoDI	GTCTC	5 cut(s)	572, 967, 1222, 2546, 2629
BfaI	CTAG	7 cut(s)	516, 963, 1263, 1664, 1865, 2124, 2615
BfmI	CTRYAG	3 cut(s)	126, 816, 1614
BfoI	RGCGCY	1 cut(s)	328
BfrI	CTTAAG	1 cut(s)	1142
BfuAI	ACCTGC	2 cut(s)	472, 1818
BfuI	GTATCC	1 cut(s)	2646
BglII	AGATCT	1 cut(s)	2332
BlnI	CCTAGG	1 cut(s)	2614
BlpI	GCTNAGC	1 cut(s)	1434
Bme1390I	CCNGG	9 cut(s)	233, 251, 430, 450, 669, 1304, 1602, 2165, 2586
Bme18I	GGWCC	3 cut(s)	1534, 1625, 2266
BmeT110I	CYCGRG	1 cut(s)	987
BmgBI	CACGTC	1 cut(s)	508
BmgT120I	GGNCC	4 cut(s)	35, 1534, 1625, 2266
BmiI	GGNNCC	7 cut(s)	248, 1239, 1260, 1626, 1898, 1998, 2692
BmrFI	CCNGG	9 cut(s)	233, 251, 430, 450, 669, 1304, 1602, 2165, 2586
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	7 cut(s)	844, 1045, 1576, 1673, 2262, 2340, 2533
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	2626
BpmI	CTGGAG	4 cut(s)	1883, 1971, 2568, 2709
Bpu10I	CCTNAGC	1 cut(s)	2698
Bpu1102I	GCTNAGC	1 cut(s)	1434
Bpu14I	TTCGAA	1 cut(s)	266
BpuEI	CTTGAG	2 cut(s)	1110, 2209
BpuMI	CCSGG	3 cut(s)	233, 1304, 1602
BsaAI	YACGTR	1 cut(s)	1910
BsaBI	GATNNNNATC	1 cut(s)	1179
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	8 cut(s)	429, 562, 609, 668, 1794, 1917, 2230, 2614
BsaWI	WCCGGW	4 cut(s)	632, 1165, 2263, 2574
Bsc4I	CCNNNNNNNGG	6 cut(s)	97, 987, 1467, 2030, 2346, 2385
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	5 cut(s)	54, 981, 1591, 1684, 1699
Bse21I	CCTNAGG	1 cut(s)	1891
Bse3DI	GCAATG	1 cut(s)	2760
Bse8I	GATNNNNATC	1 cut(s)	1179
BseAI	TCCGGA	1 cut(s)	2263
BseBI	CCWGG	6 cut(s)	251, 430, 450, 669, 2165, 2586
BseDI	CCNNGG	8 cut(s)	429, 562, 609, 668, 1794, 1917, 2230, 2614
BseJI	GATNNNNATC	1 cut(s)	1179
BseLI	CCNNNNNNNGG	6 cut(s)	97, 987, 1467, 2030, 2346, 2385
BseMI	GCAATG	1 cut(s)	2760
BseNI	ACTGG	5 cut(s)	54, 981, 1591, 1684, 1699
BseRI	GAGGAG	2 cut(s)	708, 985
BseSI	GKGCMC	1 cut(s)	2740
BseX3I	CGGCCG	1 cut(s)	1603
BseXI	GCAGC	8 cut(s)	350, 909, 917, 1010, 1045, 1450, 2383, 2508
BsgI	GTGCAG	2 cut(s)	104, 1846
Bsh1236I	CGCG	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	1606
BshFI	GGCC	9 cut(s)	36, 471, 980, 1022, 1510, 1605, 1956, 2178, 2389
BshNI	GGYRCC	1 cut(s)	1237
BshTI	ACCGGT	1 cut(s)	632
BsiEI	CGRYCG	1 cut(s)	1606
BsiHKAI	GWGCWC	5 cut(s)	1272, 2071, 2163, 2461, 2740
BsiHKCI	CYCGRG	1 cut(s)	987
BsiSI	CCGG	8 cut(s)	233, 633, 805, 1166, 1304, 1602, 2264, 2575
BslFI	GGGAC	3 cut(s)	543, 591, 2228
BslI	CCNNNNNNNGG	6 cut(s)	97, 987, 1467, 2030, 2346, 2385
BsmAI	GTCTC	5 cut(s)	572, 967, 1222, 2546, 2629
BsmBI	CGTCTC	1 cut(s)	2546
BsmFI	GGGAC	3 cut(s)	543, 591, 2228
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	9 cut(s)	36, 471, 980, 1022, 1510, 1605, 1956, 2178, 2389
Bso31I	GGTCTC	1 cut(s)	572
BsoBI	CYCGRG	1 cut(s)	987
Bsp119I	TTCGAA	1 cut(s)	266
Bsp1286I	GDGCHC	6 cut(s)	1272, 1899, 2071, 2163, 2461, 2740
Bsp13I	TCCGGA	1 cut(s)	2263
Bsp1407I	TGTACA	1 cut(s)	332
Bsp1720I	GCTNAGC	1 cut(s)	1434
Bsp19I	CCATGG	2 cut(s)	562, 609
BspACI	CCGC	5 cut(s)	322, 1606, 1763, 1838, 2251
BspANI	GGCC	9 cut(s)	36, 471, 980, 1022, 1510, 1605, 1956, 2178, 2389
BspEI	TCCGGA	1 cut(s)	2263
BspFNI	CGCG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	2437
BspLI	GGNNCC	7 cut(s)	248, 1239, 1260, 1626, 1898, 1998, 2692
BspMAI	CTGCAG	2 cut(s)	130, 1618
BspMI	ACCTGC	2 cut(s)	472, 1818
BspPI	GGATC	6 cut(s)	757, 1124, 1461, 2203, 2243, 2710
BspT104I	TTCGAA	1 cut(s)	266
BspT107I	GGYRCC	1 cut(s)	1237
BspTI	CTTAAG	1 cut(s)	1142
BspTNI	GGTCTC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	2760
BsrFI	RCCGGY	1 cut(s)	632
BsrGI	TGTACA	1 cut(s)	332
BsrI	ACTGG	5 cut(s)	54, 981, 1591, 1684, 1699
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	8 cut(s)	429, 562, 609, 668, 1794, 1917, 2230, 2614
BssT1I	CCWWGG	5 cut(s)	562, 609, 1917, 2230, 2614
Bst2UI	CCWGG	6 cut(s)	251, 430, 450, 669, 2165, 2586
Bst4CI	ACNGT	9 cut(s)	416, 605, 648, 769, 1795, 1906, 1930, 2042, 2185
Bst6I	CTCTTC	3 cut(s)	1794, 2053, 2481
BstAFI	CTTAAG	1 cut(s)	1142
BstAPI	GCANNNNNTGC	3 cut(s)	863, 1055, 1282
BstAUI	TGTACA	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	1910
BstBI	TTCGAA	1 cut(s)	266
BstC8I	GCNNGC	5 cut(s)	533, 1030, 1071, 1086, 2695
BstDSI	CCRYGG	3 cut(s)	562, 609, 1794
BstFNI	CGCG	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstMAI	GTCTC	5 cut(s)	572, 967, 1222, 2546, 2629
BstMCI	CGRYCG	1 cut(s)	1606
BstMWI	GCNNNNNNNGC	6 cut(s)	386, 863, 1007, 1055, 1282, 1673
BstNI	CCWGG	6 cut(s)	251, 430, 450, 669, 2165, 2586
BstNSI	RCATGY	2 cut(s)	576, 1073
BstSCI	CCNGG	9 cut(s)	231, 249, 428, 448, 667, 1302, 1600, 2163, 2584
BstSFI	CTRYAG	3 cut(s)	126, 816, 1614
BstSLI	GKGCMC	1 cut(s)	2740
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	8 cut(s)	350, 909, 917, 1010, 1045, 1450, 2383, 2508
BstV2I	GAAGAC	1 cut(s)	2626
BstX2I	RGATCY	3 cut(s)	1129, 1453, 2332
BstXI	CCANNNNNNTGG	2 cut(s)	689, 1234
BstYI	RGATCY	3 cut(s)	1129, 1453, 2332
BstZI	CGGCCG	1 cut(s)	1603
Bsu36I	CCTNAGG	1 cut(s)	1891
BsuI	GTATCC	1 cut(s)	2646
BsuRI	GGCC	9 cut(s)	36, 471, 980, 1022, 1510, 1605, 1956, 2178, 2389
BtgI	CCRYGG	3 cut(s)	562, 609, 1794
BtrI	CACGTC	1 cut(s)	508
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	5 cut(s)	765, 861, 1541, 1822, 2047
BveI	ACCTGC	2 cut(s)	472, 1818
Cac8I	GCNNGC	5 cut(s)	533, 1030, 1071, 1086, 2695
CaiI	CAGNNNCTG	2 cut(s)	219, 1637
CciI	TCATGA	1 cut(s)	2437
CfoI	GCGC	1 cut(s)	327
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	4 cut(s)	35, 1534, 1625, 2266
Csp6I	GTAC	8 cut(s)	47, 333, 649, 1499, 1907, 2365, 2372, 2776
CspAI	ACCGGT	1 cut(s)	632
CviQI	GTAC	8 cut(s)	47, 333, 649, 1499, 1907, 2365, 2372, 2776
DraIII	CACNNNGTG	1 cut(s)	82
EaeI	YGGCCR	4 cut(s)	469, 978, 1020, 1603
EagI	CGGCCG	1 cut(s)	1603
Eam1104I	CTCTTC	3 cut(s)	1794, 2053, 2481
EarI	CTCTTC	3 cut(s)	1794, 2053, 2481
Ecl136II	GAGCTC	1 cut(s)	1270
EclXI	CGGCCG	1 cut(s)	1603
Eco130I	CCWWGG	5 cut(s)	562, 609, 1917, 2230, 2614
Eco147I	AGGCCT	1 cut(s)	1510
Eco24I	GRGCYC	2 cut(s)	1272, 1899
Eco31I	GGTCTC	1 cut(s)	572
Eco32I	GATATC	1 cut(s)	1947
Eco47I	GGWCC	3 cut(s)	1534, 1625, 2266
Eco52I	CGGCCG	1 cut(s)	1603
Eco53kI	GAGCTC	1 cut(s)	1270
Eco57I	CTGAAG	1 cut(s)	2505
Eco81I	CCTNAGG	1 cut(s)	1891
Eco88I	CYCGRG	1 cut(s)	987
EcoICRI	GAGCTC	1 cut(s)	1270
EcoO109I	RGGNCCY	1 cut(s)	1534
EcoRI	GAATTC	1 cut(s)	777
EcoRII	CCWGG	6 cut(s)	249, 428, 448, 667, 2163, 2584
EcoRV	GATATC	1 cut(s)	1947
EcoT14I	CCWWGG	5 cut(s)	562, 609, 1917, 2230, 2614
EcoT22I	ATGCAT	3 cut(s)	296, 578, 886
EcoT38I	GRGCYC	2 cut(s)	1272, 1899
ErhI	CCWWGG	5 cut(s)	562, 609, 1917, 2230, 2614
Esp3I	CGTCTC	1 cut(s)	2546
FalI	AAGNNNNNCTT	2 cut(s)	766, 798
FaqI	GGGAC	3 cut(s)	543, 591, 2228
FbaI	TGATCA	2 cut(s)	141, 912
FriOI	GRGCYC	2 cut(s)	1272, 1899
FspBI	CTAG	7 cut(s)	516, 963, 1263, 1664, 1865, 2124, 2615
GlaI	GCGC	1 cut(s)	326
GsuI	CTGGAG	4 cut(s)	1883, 1971, 2568, 2709
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	9 cut(s)	36, 471, 980, 1022, 1510, 1605, 1956, 2178, 2389
HapII	CCGG	8 cut(s)	233, 633, 805, 1166, 1304, 1602, 2264, 2575
HhaI	GCGC	1 cut(s)	327
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	2 cut(s)	487, 843
HindII	GTYRAC	2 cut(s)	487, 843
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	4 cut(s)	54, 1804, 1886, 1913
HpaII	CCGG	8 cut(s)	233, 633, 805, 1166, 1304, 1602, 2264, 2575
HphI	GGTGA	4 cut(s)	740, 1212, 1346, 2108
Hpy166II	GTNNAC	9 cut(s)	76, 333, 487, 644, 794, 843, 2098, 2116, 2738
Hpy188I	TCNGA	9 cut(s)	150, 525, 946, 1113, 1416, 2345, 2463, 2652, 2727
Hpy8I	GTNNAC	9 cut(s)	76, 333, 487, 644, 794, 843, 2098, 2116, 2738
HpyAV	CCTTC	4 cut(s)	1423, 1471, 2010, 2084
HpyCH4III	ACNGT	9 cut(s)	416, 605, 648, 769, 1795, 1906, 1930, 2042, 2185
HpyCH4IV	ACGT	4 cut(s)	507, 1909, 1966, 2539
HpyF10VI	GCNNNNNNNGC	6 cut(s)	386, 863, 1007, 1055, 1282, 1673
HpySE526I	ACGT	4 cut(s)	507, 1909, 1966, 2539
HspAI	GCGC	1 cut(s)	325
Kpn2I	TCCGGA	1 cut(s)	2263
Ksp22I	TGATCA	2 cut(s)	141, 912
LmnI	GCTCC	5 cut(s)	695, 1902, 2166, 2518, 2690
Lsp1109I	GCAGC	8 cut(s)	350, 909, 917, 1010, 1045, 1450, 2383, 2508
LweI	GCATC	7 cut(s)	844, 1045, 1576, 1673, 2262, 2340, 2533
MaeI	CTAG	7 cut(s)	516, 963, 1263, 1664, 1865, 2124, 2615
MaeII	ACGT	4 cut(s)	507, 1909, 1966, 2539
MaeIII	GTNAC	4 cut(s)	175, 1582, 2296, 2744
MfeI	CAATTG	1 cut(s)	937
MflI	RGATCY	3 cut(s)	1129, 1453, 2332
MhlI	GDGCHC	6 cut(s)	1272, 1899, 2071, 2163, 2461, 2740
MlsI	TGGCCA	3 cut(s)	471, 980, 1022
MluNI	TGGCCA	3 cut(s)	471, 980, 1022
MlyI	GAGTC	1 cut(s)	1895
MmeI	TCCRAC	2 cut(s)	785, 1903
Mox20I	TGGCCA	3 cut(s)	471, 980, 1022
Mph1103I	ATGCAT	3 cut(s)	296, 578, 886
MroI	TCCGGA	1 cut(s)	2263
MroXI	GAANNNNTTC	1 cut(s)	166
MscI	TGGCCA	3 cut(s)	471, 980, 1022
MseI	TTAA	6 cut(s)	258, 284, 1143, 1476, 1700, 2432
MslI	CAYNNNNRTG	5 cut(s)	575, 687, 1074, 1232, 2105
Msp20I	TGGCCA	3 cut(s)	471, 980, 1022
MspA1I	CMGCKG	2 cut(s)	746, 1838
MspCI	CTTAAG	1 cut(s)	1142
MspI	CCGG	8 cut(s)	233, 633, 805, 1166, 1304, 1602, 2264, 2575
MspR9I	CCNGG	9 cut(s)	233, 251, 430, 450, 669, 1304, 1602, 2165, 2586
MunI	CAATTG	1 cut(s)	937
Mva1269I	GAATGC	1 cut(s)	294
MvaI	CCWGG	6 cut(s)	251, 430, 450, 669, 2165, 2586
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	6 cut(s)	386, 863, 1007, 1055, 1282, 1673
NciI	CCSGG	3 cut(s)	233, 1304, 1602
NcoI	CCATGG	2 cut(s)	562, 609
NlaIV	GGNNCC	7 cut(s)	248, 1239, 1260, 1626, 1898, 1998, 2692
NsiI	ATGCAT	3 cut(s)	296, 578, 886
NspI	RCATGY	2 cut(s)	576, 1073
NspV	TTCGAA	1 cut(s)	266
OliI	CACNNNNGTG	1 cut(s)	1232
PaeI	GCATGC	1 cut(s)	1073
PagI	TCATGA	1 cut(s)	2437
PceI	AGGCCT	1 cut(s)	1510
PctI	GAATGC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	54, 1804, 1913
PflMI	CCANNNNNTGG	1 cut(s)	97
PinAI	ACCGGT	1 cut(s)	632
PleI	GAGTC	1 cut(s)	1894
PpsI	GAGTC	1 cut(s)	1894
Ppu21I	YACGTR	1 cut(s)	1910
PpuMI	RGGWCCY	1 cut(s)	1534
PsiI	TTATAA	2 cut(s)	1314, 2358
Psp124BI	GAGCTC	1 cut(s)	1272
Psp5II	RGGWCCY	1 cut(s)	1534
Psp6I	CCWGG	6 cut(s)	249, 428, 448, 667, 2163, 2584
PspGI	CCWGG	6 cut(s)	249, 428, 448, 667, 2163, 2584
PspN4I	GGNNCC	7 cut(s)	248, 1239, 1260, 1626, 1898, 1998, 2692
PspPI	GGNCC	4 cut(s)	35, 1534, 1625, 2266
PspPPI	RGGWCCY	1 cut(s)	1534
PstI	CTGCAG	2 cut(s)	130, 1618
PstNI	CAGNNNCTG	2 cut(s)	219, 1637
PsuI	RGATCY	3 cut(s)	1129, 1453, 2332
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	8 cut(s)	48, 334, 650, 1500, 1908, 2366, 2373, 2777
RsaNI	GTAC	8 cut(s)	47, 333, 649, 1499, 1907, 2365, 2372, 2776
RseI	CAYNNNNRTG	5 cut(s)	575, 687, 1074, 1232, 2105
SacI	GAGCTC	1 cut(s)	1272
SaqAI	TTAA	6 cut(s)	258, 284, 1143, 1476, 1700, 2432
Sau96I	GGNCC	4 cut(s)	35, 1534, 1625, 2266
SchI	GAGTC	1 cut(s)	1895
ScrFI	CCNGG	9 cut(s)	233, 251, 430, 450, 669, 1304, 1602, 2165, 2586
SduI	GDGCHC	6 cut(s)	1272, 1899, 2071, 2163, 2461, 2740
SfaNI	GCATC	7 cut(s)	844, 1045, 1576, 1673, 2262, 2340, 2533
SfcI	CTRYAG	3 cut(s)	126, 816, 1614
SfuI	TTCGAA	1 cut(s)	266
SinI	GGWCC	3 cut(s)	1534, 1625, 2266
SmiMI	CAYNNNNRTG	5 cut(s)	575, 687, 1074, 1232, 2105
SmlI	CTYRAG	3 cut(s)	1125, 1142, 2224
SmoI	CTYRAG	3 cut(s)	1125, 1142, 2224
SphI	GCATGC	1 cut(s)	1073
SseBI	AGGCCT	1 cut(s)	1510
SsiI	CCGC	5 cut(s)	322, 1606, 1763, 1838, 2251
SspI	AATATT	1 cut(s)	877
SspMI	CTAG	7 cut(s)	516, 963, 1263, 1664, 1865, 2124, 2615
SstI	GAGCTC	1 cut(s)	1272
StuI	AGGCCT	1 cut(s)	1510
StyD4I	CCNGG	9 cut(s)	231, 249, 428, 448, 667, 1302, 1600, 2163, 2584
StyI	CCWWGG	5 cut(s)	562, 609, 1917, 2230, 2614
TaaI	ACNGT	9 cut(s)	416, 605, 648, 769, 1795, 1906, 1930, 2042, 2185
TaiI	ACGT	4 cut(s)	510, 1912, 1969, 2542
TaqI	TCGA	3 cut(s)	266, 1398, 1884
TatI	WGTACW	3 cut(s)	46, 332, 2775
TauI	GCSGC	3 cut(s)	325, 1608, 1765
TfiI	GAWTC	3 cut(s)	54, 1804, 1913
Tru1I	TTAA	6 cut(s)	258, 284, 1143, 1476, 1700, 2432
Tru9I	TTAA	6 cut(s)	258, 284, 1143, 1476, 1700, 2432
TscAI	CASTG	5 cut(s)	772, 868, 1548, 1822, 2047
TseI	GCWGC	8 cut(s)	338, 905, 922, 998, 1058, 1438, 2396, 2521
TspDTI	ATGAA	9 cut(s)	279, 362, 869, 1509, 1725, 2034, 2426, 2439, 2454
TspGWI	ACGGA	1 cut(s)	1516
TspRI	CASTG	5 cut(s)	772, 868, 1548, 1822, 2047
Van91I	CCANNNNNTGG	1 cut(s)	97
Vha464I	CTTAAG	1 cut(s)	1142
VneI	GTGCAC	1 cut(s)	2736
VpaK11BI	GGWCC	3 cut(s)	1534, 1625, 2266
XapI	RAATTY	3 cut(s)	165, 777, 2428
XceI	RCATGY	2 cut(s)	576, 1073
XcmI	CCANNNNNNNNNTGG	2 cut(s)	665, 2032
XmaJI	CCTAGG	1 cut(s)	2614
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	7 cut(s)	516, 963, 1263, 1664, 1865, 2124, 2615
Zsp2I	ATGCAT	3 cut(s)	296, 578, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.