Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Reverse (-)

11734207 .. 11736697

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCGCACCGCCACACCACGTACCGCAAGAGGTTACTCCAGCACAAGGAGCTCGGCTCCCGAGTCCACGCAGCTCAGATAAGGCAGTTCTATGGAATGGAACATGGTAGTGGATATGATGGTTGGAGAAAGACGTCGGTGGTTGCCACTCCATTTGACTTTGACAAGGCAGAATCTAAAAGGCCAAAAGGTCATTGTGTTGCTGTGCGTGTAACAAGTGAGGATCCGGATGATGGGTTTAAACCTGCTAGTGGGAAAGTTCTGTGGTCGGAGTTTATCGGTTTGGAACCTTCCCGCTTCGAATGCATTTCAAGGACTTCAACTCGTGCATCCGTACGGGATGTAGTATTTGATGGTACGTTGATGAGTACGATTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

126

Amino Acids

14.27

Weight (kDa)

9.26

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	253
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	3 cut(s)	10, 25, 295
AclWI	GGATC	2 cut(s)	218, 231
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	4 cut(s)	23, 336, 358, 370
AfiI	CCNNNNNNNGG	3 cut(s)	46, 233, 251
AgsI	TTSAA	2 cut(s)	312, 321
AluBI	AGCT	2 cut(s)	52, 74
AluI	AGCT	2 cut(s)	52, 74
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	218, 231
Ama87I	CYCGRG	1 cut(s)	60
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	300
AvaI	CYCGRG	1 cut(s)	60
BamHI	GGATCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	3 cut(s)	113, 227, 347
BfaI	CTAG	2 cut(s)	249, 379
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	60
BmiI	GGNNCC	3 cut(s)	58, 225, 288
BmsI	GCATC	1 cut(s)	338
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	1 cut(s)	23
Bpu14I	TTCGAA	1 cut(s)	300
BsaAI	YACGTR	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	134
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 233, 251
BseAI	TCCGGA	1 cut(s)	226
BseGI	GGATG	3 cut(s)	235, 329, 346
BseLI	CCNNNNNNNGG	3 cut(s)	46, 233, 251
BseMII	CTCAG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	83
BshFI	GGCC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	227
BsiWI	CGTACG	1 cut(s)	334
BslI	CCNNNNNNNGG	3 cut(s)	46, 233, 251
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	184
BsoBI	CYCGRG	1 cut(s)	60
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	3 cut(s)	10, 25, 295
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	58, 225, 288
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	2 cut(s)	218, 231
BspT104I	TTCGAA	1 cut(s)	300
BssMI	GATC	1 cut(s)	223
BssNI	GRCGYC	1 cut(s)	134
BssSI	CACGAG	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	324
BstACI	GRCGYC	1 cut(s)	134
BstBAI	YACGTR	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	3 cut(s)	235, 329, 346
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 303
BstV1I	GCAGC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	3 cut(s)	235, 329, 346
BveI	ACCTGC	1 cut(s)	253
Csp6I	GTAC	4 cut(s)	22, 335, 357, 369
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	4 cut(s)	52, 57, 74, 184
CviKI_1	RGCY	4 cut(s)	52, 57, 74, 184
CviQI	GTAC	4 cut(s)	22, 335, 357, 369
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
DraI	TTTAAA	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	52
EcoT22I	ATGCAT	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	1 cut(s)	107
FaiI	YATR	3 cut(s)	93, 105, 117
FatI	CATG	1 cut(s)	103
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	3 cut(s)	242, 316, 353
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	2 cut(s)	249, 379
GluI	GCNGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	1 cut(s)	107
HinfI	GANTC	2 cut(s)	63, 173
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	78, 271
Hpy188III	TCNNGA	2 cut(s)	60, 227
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	300
HpyCH4IV	ACGT	3 cut(s)	20, 134, 359
HpyCH4V	TGCA	2 cut(s)	306, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 303
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	3 cut(s)	20, 134, 359
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	107
Kpn2I	TCCGGA	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	49, 62
LpnPI	CCDG	3 cut(s)	53, 240, 258
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	338
MaeI	CTAG	2 cut(s)	249, 379
MaeII	ACGT	3 cut(s)	20, 134, 359
MaeIII	GTNAC	2 cut(s)	33, 211
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	2 cut(s)	104, 249
MnlI	CCTC	2 cut(s)	24, 214
Mph1103I	ATGCAT	1 cut(s)	308
MroI	TCCGGA	1 cut(s)	226
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	1 cut(s)	227
MssI	GTTTAAAC	1 cut(s)	241
Mva1269I	GAATGC	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	49, 303
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	3 cut(s)	58, 225, 288
NmeAIII	GCCGAG	1 cut(s)	33
NsiI	ATGCAT	1 cut(s)	308
NspV	TTCGAA	1 cut(s)	300
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	173
Pfl23II	CGTACG	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	71
PmeI	GTTTAAAC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	71
Ppu21I	YACGTR	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	54
PspLI	CGTACG	1 cut(s)	334
PspN4I	GGNNCC	3 cut(s)	58, 225, 288
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	4 cut(s)	23, 336, 358, 370
RsaNI	GTAC	4 cut(s)	22, 335, 357, 369
RseI	CAYNNNNRTG	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	223
SchI	GAGTC	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	9 cut(s)	23, 35, 54, 76, 137, 193, 247, 292, 362
SfaNI	GCATC	1 cut(s)	338
SfuI	TTCGAA	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	108
SsiI	CCGC	3 cut(s)	10, 25, 295
SspMI	CTAG	2 cut(s)	249, 379
SstI	GAGCTC	1 cut(s)	54
TaiI	ACGT	3 cut(s)	23, 137, 362
TaqI	TCGA	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	322
XspI	CTAG	2 cut(s)	249, 379
ZraI	GACGTC	1 cut(s)	135
Zsp2I	ATGCAT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.