Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8315067.1

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 868

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8315067.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgggtccgtcaggtgctggaaaaacaacatttatttctgctctagctggaaaagcaattggatgcaaggtgactggtctaattcttataaatggaaagaatgaatcaatccattcgtataaaagaatcctaggttttgtgccgcaagatgatattgtgcacggaaacttgacagtggaagagaatttgtggttcagtgcaaagtgcagattgtcagcggacttatcaaaagcagatgaattcctagtgactgaaagagttatcgagtccttgggccttcagacagtacgcaattccttggttggaactctagagaagcgaggaatttctggaggacagaggaaacgtgtgaatgttggcgtggaaatggttatggaaccttcacttttgattttggatgaacccacatcagggttagacagtgcctcttctcagctacttcttagagcacttagatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

153

Amino Acids

16.51

Weight (kDa)

8.64

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AciI	CCGC	2 cut(s)	143, 218
AcsI	RAATTY	3 cut(s)	184, 239, 324
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	2 cut(s)	410, 411
AflIII	ACRYGT	1 cut(s)	346
AluBI	AGCT	2 cut(s)	47, 436
AluI	AGCT	2 cut(s)	47, 436
Alw21I	GWGCWC	2 cut(s)	162, 451
Alw44I	GTGCAC	1 cut(s)	158
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	1 cut(s)	274
ApaLI	GTGCAC	1 cut(s)	158
ApoI	RAATTY	3 cut(s)	184, 239, 324
AspA2I	CCTAGG	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	5, 274
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	5
AvrII	CCTAGG	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	162
Bbv12I	GWGCWC	2 cut(s)	162, 451
BccI	CCATC	1 cut(s)	450
BfaI	CTAG	4 cut(s)	44, 131, 245, 311
BisI	GCNGC	1 cut(s)	143
BlnI	CCTAGG	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 274
BmiI	GGNNCC	2 cut(s)	6, 378
BmsI	GCATC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	130, 270, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	410, 411
Bse1I	ACTGG	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	130, 270, 297
BseGI	GGATG	2 cut(s)	68, 403
BseLI	CCNNNNNNNGG	2 cut(s)	410, 411
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	162
BsgI	GTGCAG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	162, 451
BslI	CCNNNNNNNGG	2 cut(s)	410, 411
BsnI	GGCC	1 cut(s)	276
Bsp1286I	GDGCHC	2 cut(s)	162, 451
BspACI	CCGC	2 cut(s)	143, 218
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	6, 378
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	130, 270, 297
BssT1I	CCWWGG	3 cut(s)	130, 270, 297
Bst4CI	ACNGT	3 cut(s)	175, 286, 422
Bst6I	CTCTTC	2 cut(s)	174, 433
BstDEI	CTNAG	3 cut(s)	432, 443, 452
BstF5I	GGATG	2 cut(s)	68, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSLI	GKGCMC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	68, 403
BtsIMutI	CAGTG	3 cut(s)	180, 202, 427
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	5, 274
Csp6I	GTAC	1 cut(s)	287
CviJI	RGCY	3 cut(s)	47, 276, 436
CviKI_1	RGCY	3 cut(s)	47, 276, 436
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	3 cut(s)	432, 443, 452
Eam1104I	CTCTTC	2 cut(s)	174, 433
EarI	CTCTTC	2 cut(s)	174, 433
Eco130I	CCWWGG	3 cut(s)	130, 270, 297
Eco47I	GGWCC	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	239
EcoT14I	CCWWGG	3 cut(s)	130, 270, 297
ErhI	CCWWGG	3 cut(s)	130, 270, 297
FaiI	YATR	3 cut(s)	89, 120, 374
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	2 cut(s)	75, 410
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	4 cut(s)	44, 131, 245, 311
GluI	GCNGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	276
HinfI	GANTC	3 cut(s)	104, 126, 266
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	2 cut(s)	311, 330
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	2 cut(s)	287, 390
HpyCH4III	ACNGT	3 cut(s)	175, 286, 422
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	4 cut(s)	66, 160, 200, 207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	432, 443, 452
HpySE526I	ACGT	1 cut(s)	346
LpnPI	CCDG	5 cut(s)	3, 33, 60, 315, 396
LweI	GCATC	1 cut(s)	53
MaeI	CTAG	4 cut(s)	44, 131, 245, 311
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	2 cut(s)	70, 247
MboII	GAAGA	2 cut(s)	191, 420
MfeI	CAATTG	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	162, 451
MluCI	AATT	6 cut(s)	57, 81, 184, 239, 292, 324
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	4 cut(s)	314, 326, 333, 436
MslI	CAYNNNNRTG	1 cut(s)	454
MspA1I	CMGCKG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	53
NlaIV	GGNNCC	2 cut(s)	6, 378
NmuCI	GTSAC	2 cut(s)	70, 247
PfeI	GAWTC	2 cut(s)	104, 126
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	6, 378
PspPI	GGNCC	2 cut(s)	5, 274
PstNI	CAGNNNCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	454
SatI	GCNGC	1 cut(s)	143
Sau96I	GGNCC	2 cut(s)	5, 274
SchI	GAGTC	1 cut(s)	275
SduI	GDGCHC	2 cut(s)	162, 451
SetI	ASST	7 cut(s)	16, 49, 72, 136, 349, 382, 438
SfaNI	GCATC	1 cut(s)	53
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	454
Sse9I	AATT	6 cut(s)	57, 81, 184, 239, 292, 324
SsiI	CCGC	2 cut(s)	143, 218
SspMI	CTAG	4 cut(s)	44, 131, 245, 311
StyI	CCWWGG	3 cut(s)	130, 270, 297
TaaI	ACNGT	3 cut(s)	175, 286, 422
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	264
TasI	AATT	6 cut(s)	57, 81, 184, 239, 292, 324
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	104, 126
TscAI	CASTG	3 cut(s)	180, 202, 427
TseFI	GTSAC	2 cut(s)	70, 247
Tsp45I	GTSAC	2 cut(s)	70, 247
TspDTI	ATGAA	3 cut(s)	117, 252, 414
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	3 cut(s)	180, 202, 427
VneI	GTGCAC	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	3 cut(s)	184, 239, 324
XbaI	TCTAGA	1 cut(s)	310
XmaJI	CCTAGG	1 cut(s)	130
XspI	CTAG	4 cut(s)	44, 131, 245, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.