Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Reverse (-)

39902520 .. 39905776

Gene Structure 3257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG223100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCCTATTAATTTGCAAGGAGACCAAGTGAAGCCAGTACTTGACCTGGTGGAGCACCCGGTCACTAAGTGGATAGCAGAAATAAATCTGCTAGCAGACCAAGTTGCAGTTGGGATGGGCATTCCTCTTTGGCAAATTCCTGAGATAAGGCGGTTCTATGGAACGGAACATGGTAGTGGATATGATGCTTGGAGAAAGACGTCAGTGGTTGCCACTCTATTTGACTTTGGCAAGGCAGAATCTAAAAGGCCAAAAGGTCATTGTGTTGCTGTGTGTGTAACAAGTGAAGATCCAGATGATGGCTTTAAACCTGCTAGTGGAAAAGTTCAGATACCATTAGATGGATTCCAAGCAACCCCTATGCTTCAGATTCTAGATCGAAGTGGTAATGCAGCTTCGTTACCAGAGCACCCTGTATTTTCTACCTTACAGTATCTGCAAGAGCTTTATCTGAGGTCAGTGAACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

156

Amino Acids

17.24

Weight (kDa)

5.5

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	203
Acc36I	ACCTGC	1 cut(s)	319
AccB7I	CCANNNNNTGG	2 cut(s)	299, 341
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	200
AdeI	CACNNNGTG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	3 cut(s)	299, 317, 341
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	2 cut(s)	395, 445
AluI	AGCT	2 cut(s)	395, 445
Alw21I	GWGCWC	2 cut(s)	57, 411
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	436
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	135
AseI	ATTAAT	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	59
AsuNHI	GCTAGC	1 cut(s)	91
BarI	GAAGNNNNNNTAC	2 cut(s)	379, 411
Bbv12I	GWGCWC	2 cut(s)	57, 411
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	3 cut(s)	109, 293, 335
BciT130I	CCWGG	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	3 cut(s)	92, 315, 374
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
BmcAI	AGTACT	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	47, 59
BmrFI	CCNGG	2 cut(s)	47, 59
BmsI	GCATC	1 cut(s)	175
BmtI	GCTAGC	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	3 cut(s)	299, 317, 341
Bse1I	ACTGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	3 cut(s)	299, 317, 341
BseMII	CTCAG	2 cut(s)	132, 443
BseNI	ACTGG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	404
BshFI	GGCC	1 cut(s)	250
BsiHKAI	GWGCWC	2 cut(s)	57, 411
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	299, 317, 341
BsmAI	GTCTC	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	250
Bso31I	GGTCTC	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	57, 411
Bsp143I	GATC	2 cut(s)	289, 376
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	2 cut(s)	133, 444
BspMI	ACCTGC	1 cut(s)	319
BspOI	GCTAGC	1 cut(s)	95
BspPI	GGATC	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	35
BssMI	GATC	2 cut(s)	289, 376
BssNI	GRCGYC	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	432
BstACI	GRCGYC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	66, 141, 452
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	2 cut(s)	292, 379
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	2 cut(s)	289, 376
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	45, 57
BstV1I	GCAGC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	210, 465
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	436
CsiI	ACCWGGT	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	38
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	5 cut(s)	34, 250, 303, 395, 445
CviKI_1	RGCY	5 cut(s)	34, 250, 303, 395, 445
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	3 cut(s)	66, 141, 452
DpnI	GATC	2 cut(s)	291, 378
DpnII	GATC	2 cut(s)	289, 376
DraI	TTTAAA	1 cut(s)	307
DraIII	CACNNNGTG	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	173
FaiI	YATR	4 cut(s)	159, 171, 183, 362
FatI	CATG	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	3 cut(s)	92, 315, 374
GluI	GCNGC	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	173
HinfI	GANTC	3 cut(s)	239, 345, 370
HpaII	CCGG	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	3 cut(s)	330, 369, 453
Hpy188III	TCNNGA	3 cut(s)	140, 293, 374
Hpy8I	GTNNAC	1 cut(s)	463
HpyCH4III	ACNGT	1 cut(s)	432
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	4 cut(s)	16, 107, 392, 439
HpyF3I	CTNAG	3 cut(s)	66, 141, 452
HpySE526I	ACGT	1 cut(s)	200
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	289, 376
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	9 cut(s)	32, 48, 59, 72, 153, 306, 324, 417, 426
Lsp1109I	GCAGC	1 cut(s)	404
LweI	GCATC	1 cut(s)	175
MabI	ACCWGGT	1 cut(s)	45
MaeI	CTAG	3 cut(s)	92, 315, 374
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	3 cut(s)	61, 277, 399
MalI	GATC	2 cut(s)	291, 378
MboI	GATC	2 cut(s)	289, 376
MboII	GAAGA	1 cut(s)	299
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	57, 411
MluCI	AATT	2 cut(s)	10, 135
MnlI	CCTC	2 cut(s)	135, 447
MseI	TTAA	2 cut(s)	9, 306
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	47, 59
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	47
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	289, 376
NheI	GCTAGC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	61
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	239, 345, 370
PflMI	CCANNNNNTGG	2 cut(s)	299, 341
PkrI	GCNGC	1 cut(s)	394
PshBI	ATTAAT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	9, 306
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	2 cut(s)	289, 376
ScaI	AGTACT	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	47, 59
SduI	GDGCHC	2 cut(s)	57, 411
SetI	ASST	8 cut(s)	48, 203, 259, 313, 397, 428, 447, 458
SexAI	ACCWGGT	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	2 cut(s)	10, 135
SsiI	CCGC	1 cut(s)	151
SspMI	CTAG	3 cut(s)	92, 315, 374
StyD4I	CCNGG	2 cut(s)	45, 57
TaaI	ACNGT	1 cut(s)	432
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	379
TasI	AATT	2 cut(s)	10, 135
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	3 cut(s)	239, 345, 370
Tru1I	TTAA	2 cut(s)	9, 306
Tru9I	TTAA	2 cut(s)	9, 306
TscAI	CASTG	2 cut(s)	210, 465
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	210, 465
Van91I	CCANNNNNTGG	2 cut(s)	299, 341
VspI	ATTAAT	1 cut(s)	9
XapI	RAATTY	1 cut(s)	135
XbaI	TCTAGA	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	3 cut(s)	92, 315, 374
ZraI	GACGTC	1 cut(s)	201
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.