Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Forward (+)

55116811 .. 55124038

Gene Structure 7228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G027590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3351 bp

ATGAGCTTGAAGAAGCTCAAAGCTTCAAACTTGGGCTCATTTCTTGTACTGGGAATTTTAGCTTTGAGCTTGGTTCACTTGGTGCAGAGCCAAGATGTGGATGACTATGATGGAATTGACAACCCTGCAGTTCTTCCATTGATCACTCAGATTGTGTATGGAAGAATTTCAAATGTTACAGCAGTTCTCAGTAGGGAGATTAGCAATCGTTCCAGCTTCTGTGTGAAAGACCCGGAAGCTGATTGGAACCAGGCATTTAATTTTTCGAACAATTTGGAGTTCTTAACTTCATGCATTCAAAAGACTAAAGGAGATATTACGCGGCGCTTGTGTACAGCAGCAGAGATGAAGTTTTATTTCAACAATTTCTTTGTAAAGGCTGAGAGTGCAAATTACTTGAAACCTAACCAGAACTGTAATATAACCTCCTGGGTTTCTGGGTGTGAGCCAGGATGGGCTTGTAGTGTTGGCCAAGATCAGCAGGTTGACCTCAAAAATGCACAGGACGTGCCTCCTAGAACTCAGAACTGCCAGCCTTGTTGTGAGGGTTTCTTTTGTCCCCATGGTCTCACATGCATGATACCTTGCCCATCGGGTGCTTACTGTCCCATGGCAACCCTGAACAGAGCAACCGGTATTTGTGAACCGTACATTTACCAGCTACCTCCTGGGCAACCAAACCATACTTGTGGAGGAGCAAATATATGGGCTGATGTTGTTAGTAGTGGTGAATTATTCTGTTCAGCTGGATCATATTGTCCAACCACTGTGAAAAGAATTCCTTGCAGTAGTGGACATTACTGCCGGATGGGTTCTACAGATGAGAAACGCTGTTTCAAGTTGACTTCCTGTGATGCAAACACTGCAAATCAAAATATTCATGCATACGGGATAATGCTTATTGCAGCTTTGATCACTCTGCTGCTCATTATTTACAATTGTTCTGACCAAGTAATCATCACTAGGGGGAGGAGACTGGCCAAATCTCGGGAGAAAGCAGCCAAAAGTGCAAGGGAAATGGCCAAAGCACGCCAAAGATGGAAAGGTGCAAAAGATGCTGCTAAGAAGCATGCAAGTGGTTTGCAAGCTCATTTATCACGCACATTTTCTCGGAAAAAGGACACTCAAGATCCTGAGAAACTTAAGATTTTGAATGAGCCAAAACCGGACATGGATGATGATCTGCCTATACCTCCACATCCAAGTAGATCAAATGTCTCACCATCCACATCTGTGGCACCAAAGGGAAAGAAAAAGGAACCTAGTGAGCTCATGCAGATTATGCGTAAAATTGAAGATGACCCGGAGAATTATAAAGGTTTCAGTATTGGAGGTGAGGACACAAATGTAGGAAATGTGCCGAAAGGAAAGCAAATACATACTCATACACAAATCTTCGATTATGCTTATGCTCAGATTGAGAAAGAGAAGGCTCAGCAGCAAGACTACAAGGATCTTACCTTCTCTGGGGTGGTTAAAATGGCTACCAACAATGAAGTACGGAAAAGGCCTCTAATTGAGATTTCTTTCAAGGACCTTACACTGACTTTGAAATCAAAAAATAAGCATCTACTGAGGTGTGTAACTGGTAAAATAAAGCCCGGCCGCATTACTGCAGTCATGGGTCCATCAGGGGCTGGAAAAACAACATTTCTTTCTGCCCTAGCTGGAAAAGCGACTGGATGCAATATGACTGGTTTAATTCTTGTAAATGGGAGGAATGTATCAATCCATTCATATAAGAAAATCATAGGTTTTGTGCCGCAAGATGATATTGTGCATGGAAACTTGACCGTGGAAGAGAATCTATGGTTCAGTGCAAAGTGCAGGTTATCAGCGGACTTATCAAAACCAGATAAAGTTCTAGTGGTTGAAAGAGCTATCGAGTCCTTAGGGCTCCAGACGGTACGTGATTCCTTGGTTGGAACAGTAGAAAAGCGAGGGATATCTGGAGGCCAGAGGAAACGTGTAAATGTTGGTTTGGAAATGGTTATGGAACCTTCACTTTTGATCTTGGATGAACCCACATCTGGTTTGGACAGTGCCTCTTCTCAGCTACTTCTTAGAGCACTTAGACGGGAAGCTCTTGAAGGGGTAAACATCTGCATGGTGGTTCACCAACCTAGCTATGCCTTGTTCAAGATGTTTGATGAGTTAGTGCTCCTGGCAAAAGGTGGCCTAACTGTCTATCATGGATCAGCAAAGCAAGTAGAAGAATACTTCTCAAGCCTTGGGATCAATGTCCCAGACCGCATCAACCCTCCGGACCACTACATTGACATTTTGGAGGGTATGGTAACAACAGAAAGAAGTTCAGGAGTGAATTATAGAGATCTTCCCCTCAGATGGATGCTTTATAATGGGTACTCAGTACCCCCCGATATGAGGCCAAGTGCTGCTCAACTTGAATTGCCCTCAATGGATGAAAATTTAATTCATGAAACTAATCCTGCTGGTGCTCAGATAGAGGAACAATCTTTTGCTGAAGAGTTATGGCAAGATGTAAGAACTAATGTGGAGCTGCATCGTGAGAAGATACGTCTCAATTTCTTGAAATCTAAGGATATGTCTAACCGGAGAACTCCAGGTGTATTTCTGCAATACAGATACTTCCTAGGAAGACTTGGTAAGCAGAGACTTAGAGAAGCTCGGATACAGGCAGTAGATTATTTGATTTTATTACTTGCTGGAGCCTGCTTAGGATCACTTGCAAAAGTGAGCGATCAGAACTTTGGTGCACTTGGTTACACATACACCATCATTGCAGTTTCTCTACTGTGTAAGATTGCGGCTTTGAGATCATTTTCCCTGGATAGATTACAATATTGGAGAGAGCGCGCATCTGGGATGAGCAGCTTGGCTTATTTTCTTGCTAAGGATACAGTCGACCATTTTAATACATTGATCAAACCTTTCGTGTATCTGTCCATGTTCTACTTCTTCACCAACCCAAGATCTAGCTTTGCAGATAATTATGTTGTTCTGCTCTGCCTTGTGTACTGTGTAACTGGCATAGCCTATGCACTAGCAATATTTTTCGAACAAGGTGCAGCCCAGCTGTCATCGGTTCTCCTTCCAGTTGTTTTGACACTTATAGCAACACGGCCGCAAGATGGTCAGATTCTAAAGAATTTAGCCAATGTATGCTACCCTAAGTGGGCTTTGGAAGCATTTGTGATTGCAAATGCTGAAAGGTATTCTGGAGTATGGCTAATAACTCGGTGCGGGGCACTTTTGGAAAGTGGCTATAATCTGAATGATTGGAGTCTTTGTATAATAGTCCTCATCTTCACAGGGTTTGTTAGCCGTGTGATAGCTTTCCTTTGCATGGTGACTTTTCAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

1116

Amino Acids

124.07

Weight (kDa)

8.85

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	528 - 677	4e-25	ABC transporter
ABC2_membrane_7	PF19055	706 - 1116	4.4e-225	ABC-2 type transporter
ABC2_membrane	PF01061	872 - 1060	4e-09	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1314, 2358
Acc36I	ACCTGC	2 cut(s)	472, 1818
AccB1I	GGYRCC	1 cut(s)	1237
AccB7I	CCANNNNNTGG	1 cut(s)	97
AccI	GTMKAC	1 cut(s)	2886
AccII	CGCG	2 cut(s)	322, 2838
AccIII	TCCGGA	1 cut(s)	2263
AciI	CCGC	8 cut(s)	322, 1606, 1763, 1838, 2251, 2789, 3107, 3225
AclWI	GGATC	6 cut(s)	757, 1124, 1461, 2203, 2243, 2710
AcoI	YGGCCR	5 cut(s)	469, 978, 1020, 1603, 3104
AcsI	RAATTY	5 cut(s)	54, 165, 777, 2428, 3130
AcuI	CTGAAG	1 cut(s)	2505
AdeI	CACNNNGTG	1 cut(s)	82
AfaI	GTAC	8 cut(s)	48, 334, 650, 1500, 1908, 2366, 2373, 2999
AfiI	CCNNNNNNNGG	9 cut(s)	97, 987, 1467, 2030, 2346, 2385, 3113, 3157, 3328
AflII	CTTAAG	1 cut(s)	1142
AflIII	ACRYGT	1 cut(s)	1966
AgeI	ACCGGT	1 cut(s)	632
AjiI	CACGTC	1 cut(s)	508
AjnI	CCWGG	7 cut(s)	249, 428, 448, 667, 2163, 2584, 2808
AleI	CACNNNNGTG	1 cut(s)	1232
Alw21I	GWGCWC	5 cut(s)	1272, 2071, 2163, 2461, 2740
Alw26I	GTCTC	5 cut(s)	572, 967, 1222, 2546, 2629
Alw44I	GTGCAC	1 cut(s)	2736
AlwI	GGATC	6 cut(s)	757, 1124, 1461, 2203, 2243, 2710
AlwNI	CAGNNNCTG	2 cut(s)	219, 1637
Ama87I	CYCGRG	1 cut(s)	987
Aor13HI	TCCGGA	1 cut(s)	2263
AoxI	GGCC	9 cut(s)	469, 978, 1020, 1508, 1603, 1954, 2176, 2387, 3104
ApaLI	GTGCAC	1 cut(s)	2736
ApoI	RAATTY	5 cut(s)	54, 165, 777, 2428, 3130
AsiGI	ACCGGT	1 cut(s)	632
Asp700I	GAANNNNTTC	1 cut(s)	166
AspA2I	CCTAGG	1 cut(s)	2614
AspLEI	GCGC	3 cut(s)	327, 2838, 2840
AspS9I	GGNCC	3 cut(s)	1534, 1625, 2266
AsuC2I	CCSGG	3 cut(s)	233, 1304, 1602
AsuHPI	GGTGA	6 cut(s)	740, 1212, 1346, 2108, 2935, 3343
AsuII	TTCGAA	2 cut(s)	266, 3039
AvaI	CYCGRG	1 cut(s)	987
AvaII	GGWCC	3 cut(s)	1534, 1625, 2266
AvrII	CCTAGG	1 cut(s)	2614
AxyI	CCTNAGG	1 cut(s)	1891
BaeGI	GKGCMC	2 cut(s)	2740, 3232
BalI	TGGCCA	3 cut(s)	471, 980, 1022
BanI	GGYRCC	1 cut(s)	1237
BanII	GRGCYC	3 cut(s)	38, 1272, 1899
BarI	GAAGNNNNNNTAC	2 cut(s)	2637, 2669
BbsI	GAAGAC	1 cut(s)	2626
Bbv12I	GWGCWC	5 cut(s)	1272, 2071, 2163, 2461, 2740
BceAI	ACGGC	2 cut(s)	3119, 3291
BcgI	CGANNNNNNTGC	2 cut(s)	3029, 3063
BciT130I	CCWGG	7 cut(s)	251, 430, 450, 669, 2165, 2586, 2810
BciVI	GTATCC	2 cut(s)	2646, 2872
BclI	TGATCA	3 cut(s)	141, 912, 2904
BcnI	CCSGG	3 cut(s)	233, 1304, 1602
BcoDI	GTCTC	5 cut(s)	572, 967, 1222, 2546, 2629
BfaI	CTAG	9 cut(s)	516, 963, 1263, 1664, 1865, 2124, 2615, 2958, 3026
BfmI	CTRYAG	3 cut(s)	126, 816, 1614
BfoI	RGCGCY	1 cut(s)	328
BfrI	CTTAAG	1 cut(s)	1142
BfuAI	ACCTGC	2 cut(s)	472, 1818
BfuI	GTATCC	2 cut(s)	2646, 2872
BglII	AGATCT	2 cut(s)	2332, 2954
BlnI	CCTAGG	1 cut(s)	2614
BlpI	GCTNAGC	1 cut(s)	1434
Bme18I	GGWCC	3 cut(s)	1534, 1625, 2266
BmeT110I	CYCGRG	1 cut(s)	987
BmgBI	CACGTC	1 cut(s)	508
BmgT120I	GGNCC	3 cut(s)	1534, 1625, 2266
BmiI	GGNNCC	7 cut(s)	248, 1239, 1260, 1626, 1898, 1998, 2692
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	8 cut(s)	844, 1045, 1576, 1673, 2262, 2340, 2533, 2849
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	2626
BpmI	CTGGAG	5 cut(s)	1883, 1971, 2568, 2709, 3222
Bpu10I	CCTNAGC	2 cut(s)	2698, 2874
Bpu1102I	GCTNAGC	1 cut(s)	1434
Bpu14I	TTCGAA	2 cut(s)	266, 3039
BpuEI	CTTGAG	2 cut(s)	1110, 2209
BpuMI	CCSGG	3 cut(s)	233, 1304, 1602
BsaAI	YACGTR	1 cut(s)	1910
BsaBI	GATNNNNATC	1 cut(s)	1179
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	9 cut(s)	429, 562, 609, 668, 1794, 1917, 2230, 2614, 2808
BsaWI	WCCGGW	4 cut(s)	632, 1165, 2263, 2574
BsaXI	ACNNNNNCTCC	2 cut(s)	3256, 3286
Bsc4I	CCNNNNNNNGG	9 cut(s)	97, 987, 1467, 2030, 2346, 2385, 3113, 3157, 3328
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	7 cut(s)	54, 981, 1591, 1684, 1699, 3013, 3077
Bse21I	CCTNAGG	1 cut(s)	1891
Bse3DI	GCAATG	1 cut(s)	2760
Bse8I	GATNNNNATC	1 cut(s)	1179
BseAI	TCCGGA	1 cut(s)	2263
BseBI	CCWGG	7 cut(s)	251, 430, 450, 669, 2165, 2586, 2810
BseDI	CCNNGG	9 cut(s)	429, 562, 609, 668, 1794, 1917, 2230, 2614, 2808
BseJI	GATNNNNATC	1 cut(s)	1179
BseLI	CCNNNNNNNGG	9 cut(s)	97, 987, 1467, 2030, 2346, 2385, 3113, 3157, 3328
BseMI	GCAATG	1 cut(s)	2760
BseNI	ACTGG	7 cut(s)	54, 981, 1591, 1684, 1699, 3013, 3077
BsePI	GCGCGC	1 cut(s)	2836
BseRI	GAGGAG	2 cut(s)	708, 985
BseSI	GKGCMC	2 cut(s)	2740, 3232
BseX3I	CGGCCG	2 cut(s)	1603, 3104
BseYI	CCCAGC	1 cut(s)	3054
BsgI	GTGCAG	3 cut(s)	104, 1846, 3069
Bsh1236I	CGCG	2 cut(s)	322, 2838
Bsh1285I	CGRYCG	2 cut(s)	1606, 3107
BshFI	GGCC	9 cut(s)	471, 980, 1022, 1510, 1605, 1956, 2178, 2389, 3106
BshNI	GGYRCC	1 cut(s)	1237
BshTI	ACCGGT	1 cut(s)	632
BsiEI	CGRYCG	2 cut(s)	1606, 3107
BsiHKAI	GWGCWC	5 cut(s)	1272, 2071, 2163, 2461, 2740
BsiHKCI	CYCGRG	1 cut(s)	987
BsiSI	CCGG	8 cut(s)	233, 633, 805, 1166, 1304, 1602, 2264, 2575
BslFI	GGGAC	3 cut(s)	543, 591, 2228
BslI	CCNNNNNNNGG	9 cut(s)	97, 987, 1467, 2030, 2346, 2385, 3113, 3157, 3328
BsmAI	GTCTC	5 cut(s)	572, 967, 1222, 2546, 2629
BsmBI	CGTCTC	1 cut(s)	2546
BsmFI	GGGAC	3 cut(s)	543, 591, 2228
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	9 cut(s)	471, 980, 1022, 1510, 1605, 1956, 2178, 2389, 3106
Bso31I	GGTCTC	1 cut(s)	572
BsoBI	CYCGRG	1 cut(s)	987
Bsp119I	TTCGAA	2 cut(s)	266, 3039
Bsp1286I	GDGCHC	8 cut(s)	38, 1272, 1899, 2071, 2163, 2461, 2740, 3232
Bsp13I	TCCGGA	1 cut(s)	2263
Bsp1407I	TGTACA	1 cut(s)	332
Bsp1720I	GCTNAGC	1 cut(s)	1434
Bsp19I	CCATGG	2 cut(s)	562, 609
BspACI	CCGC	8 cut(s)	322, 1606, 1763, 1838, 2251, 2789, 3107, 3225
BspANI	GGCC	9 cut(s)	471, 980, 1022, 1510, 1605, 1956, 2178, 2389, 3106
BspEI	TCCGGA	1 cut(s)	2263
BspFNI	CGCG	2 cut(s)	322, 2838
BspHI	TCATGA	1 cut(s)	2437
BspLI	GGNNCC	7 cut(s)	248, 1239, 1260, 1626, 1898, 1998, 2692
BspMAI	CTGCAG	2 cut(s)	130, 1618
BspMI	ACCTGC	2 cut(s)	472, 1818
BspPI	GGATC	6 cut(s)	757, 1124, 1461, 2203, 2243, 2710
BspT104I	TTCGAA	2 cut(s)	266, 3039
BspT107I	GGYRCC	1 cut(s)	1237
BspTI	CTTAAG	1 cut(s)	1142
BspTNI	GGTCTC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	2760
BsrFI	RCCGGY	1 cut(s)	632
BsrGI	TGTACA	1 cut(s)	332
BsrI	ACTGG	7 cut(s)	54, 981, 1591, 1684, 1699, 3013, 3077
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	9 cut(s)	429, 562, 609, 668, 1794, 1917, 2230, 2614, 2808
BssHII	GCGCGC	1 cut(s)	2836
BssT1I	CCWWGG	5 cut(s)	562, 609, 1917, 2230, 2614
Bst2UI	CCWGG	7 cut(s)	251, 430, 450, 669, 2165, 2586, 2810
Bst6I	CTCTTC	3 cut(s)	1794, 2053, 2481
BstAFI	CTTAAG	1 cut(s)	1142
BstAPI	GCANNNNNTGC	3 cut(s)	863, 1055, 1282
BstAUI	TGTACA	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	1910
BstBI	TTCGAA	2 cut(s)	266, 3039
BstC8I	GCNNGC	6 cut(s)	533, 1030, 1071, 1086, 2695, 2838
BstDSI	CCRYGG	3 cut(s)	562, 609, 1794
BstFNI	CGCG	2 cut(s)	322, 2838
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	3 cut(s)	327, 2838, 2840
BstMAI	GTCTC	5 cut(s)	572, 967, 1222, 2546, 2629
BstMCI	CGRYCG	2 cut(s)	1606, 3107
BstMWI	GCNNNNNNNGC	7 cut(s)	386, 863, 1007, 1055, 1282, 1673, 3167
BstNI	CCWGG	7 cut(s)	251, 430, 450, 669, 2165, 2586, 2810
BstNSI	RCATGY	2 cut(s)	576, 1073
BstSFI	CTRYAG	3 cut(s)	126, 816, 1614
BstSLI	GKGCMC	2 cut(s)	2740, 3232
BstUI	CGCG	2 cut(s)	322, 2838
BstV2I	GAAGAC	1 cut(s)	2626
BstX2I	RGATCY	4 cut(s)	1129, 1453, 2332, 2954
BstXI	CCANNNNNNTGG	2 cut(s)	689, 1234
BstYI	RGATCY	4 cut(s)	1129, 1453, 2332, 2954
BstZI	CGGCCG	2 cut(s)	1603, 3104
Bsu36I	CCTNAGG	1 cut(s)	1891
BsuI	GTATCC	2 cut(s)	2646, 2872
BsuRI	GGCC	9 cut(s)	471, 980, 1022, 1510, 1605, 1956, 2178, 2389, 3106
BtgI	CCRYGG	3 cut(s)	562, 609, 1794
BtrI	CACGTC	1 cut(s)	508
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	5 cut(s)	765, 861, 1541, 1822, 2047
BveI	ACCTGC	2 cut(s)	472, 1818
Cac8I	GCNNGC	6 cut(s)	533, 1030, 1071, 1086, 2695, 2838
CaiI	CAGNNNCTG	2 cut(s)	219, 1637
CciI	TCATGA	1 cut(s)	2437
CfoI	GCGC	3 cut(s)	327, 2838, 2840
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	3 cut(s)	1534, 1625, 2266
Csp6I	GTAC	8 cut(s)	47, 333, 649, 1499, 1907, 2365, 2372, 2998
CspAI	ACCGGT	1 cut(s)	632
CviQI	GTAC	8 cut(s)	47, 333, 649, 1499, 1907, 2365, 2372, 2998
DraIII	CACNNNGTG	1 cut(s)	82
EaeI	YGGCCR	5 cut(s)	469, 978, 1020, 1603, 3104
EagI	CGGCCG	2 cut(s)	1603, 3104
Eam1104I	CTCTTC	3 cut(s)	1794, 2053, 2481
EarI	CTCTTC	3 cut(s)	1794, 2053, 2481
Ecl136II	GAGCTC	1 cut(s)	1270
EclXI	CGGCCG	2 cut(s)	1603, 3104
Eco130I	CCWWGG	5 cut(s)	562, 609, 1917, 2230, 2614
Eco147I	AGGCCT	1 cut(s)	1510
Eco24I	GRGCYC	3 cut(s)	38, 1272, 1899
Eco31I	GGTCTC	1 cut(s)	572
Eco32I	GATATC	1 cut(s)	1947
Eco47I	GGWCC	3 cut(s)	1534, 1625, 2266
Eco52I	CGGCCG	2 cut(s)	1603, 3104
Eco53kI	GAGCTC	1 cut(s)	1270
Eco57I	CTGAAG	1 cut(s)	2505
Eco81I	CCTNAGG	1 cut(s)	1891
Eco88I	CYCGRG	1 cut(s)	987
EcoICRI	GAGCTC	1 cut(s)	1270
EcoO109I	RGGNCCY	1 cut(s)	1534
EcoRI	GAATTC	1 cut(s)	777
EcoRII	CCWGG	7 cut(s)	249, 428, 448, 667, 2163, 2584, 2808
EcoRV	GATATC	1 cut(s)	1947
EcoT14I	CCWWGG	5 cut(s)	562, 609, 1917, 2230, 2614
EcoT22I	ATGCAT	3 cut(s)	296, 578, 886
EcoT38I	GRGCYC	3 cut(s)	38, 1272, 1899
ErhI	CCWWGG	5 cut(s)	562, 609, 1917, 2230, 2614
Esp3I	CGTCTC	1 cut(s)	2546
FalI	AAGNNNNNCTT	2 cut(s)	766, 798
FaqI	GGGAC	3 cut(s)	543, 591, 2228
FauI	CCCGC	1 cut(s)	3218
FbaI	TGATCA	3 cut(s)	141, 912, 2904
FblI	GTMKAC	1 cut(s)	2886
FriOI	GRGCYC	3 cut(s)	38, 1272, 1899
FspBI	CTAG	9 cut(s)	516, 963, 1263, 1664, 1865, 2124, 2615, 2958, 3026
GlaI	GCGC	3 cut(s)	326, 2837, 2839
GsaI	CCCAGC	1 cut(s)	3058
GsuI	CTGGAG	5 cut(s)	1883, 1971, 2568, 2709, 3222
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	9 cut(s)	471, 980, 1022, 1510, 1605, 1956, 2178, 2389, 3106
HapII	CCGG	8 cut(s)	233, 633, 805, 1166, 1304, 1602, 2264, 2575
HhaI	GCGC	3 cut(s)	327, 2838, 2840
Hin6I	GCGC	3 cut(s)	325, 2836, 2838
HinP1I	GCGC	3 cut(s)	325, 2836, 2838
HincII	GTYRAC	3 cut(s)	487, 843, 2887
HindII	GTYRAC	3 cut(s)	487, 843, 2887
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	5 cut(s)	1804, 1886, 1913, 3121, 3265
HpaII	CCGG	8 cut(s)	233, 633, 805, 1166, 1304, 1602, 2264, 2575
HphI	GGTGA	6 cut(s)	740, 1212, 1346, 2108, 2935, 3343
HpyAV	CCTTC	5 cut(s)	1423, 1471, 2010, 2084, 3083
HpyCH4IV	ACGT	4 cut(s)	507, 1909, 1966, 2539
HpyF10VI	GCNNNNNNNGC	7 cut(s)	386, 863, 1007, 1055, 1282, 1673, 3167
HpySE526I	ACGT	4 cut(s)	507, 1909, 1966, 2539
HspAI	GCGC	3 cut(s)	325, 2836, 2838
Kpn2I	TCCGGA	1 cut(s)	2263
Ksp22I	TGATCA	3 cut(s)	141, 912, 2904
LmnI	GCTCC	5 cut(s)	695, 1902, 2166, 2518, 2690
LweI	GCATC	8 cut(s)	844, 1045, 1576, 1673, 2262, 2340, 2533, 2849
MaeI	CTAG	9 cut(s)	516, 963, 1263, 1664, 1865, 2124, 2615, 2958, 3026
MaeII	ACGT	4 cut(s)	507, 1909, 1966, 2539
MaeIII	GTNAC	6 cut(s)	175, 1582, 2296, 2744, 3004, 3331
MfeI	CAATTG	1 cut(s)	937
MflI	RGATCY	4 cut(s)	1129, 1453, 2332, 2954
MhlI	GDGCHC	8 cut(s)	38, 1272, 1899, 2071, 2163, 2461, 2740, 3232
MlsI	TGGCCA	3 cut(s)	471, 980, 1022
MluNI	TGGCCA	3 cut(s)	471, 980, 1022
MlyI	GAGTC	2 cut(s)	1895, 3274
MmeI	TCCRAC	2 cut(s)	785, 1903
Mox20I	TGGCCA	3 cut(s)	471, 980, 1022
Mph1103I	ATGCAT	3 cut(s)	296, 578, 886
MroI	TCCGGA	1 cut(s)	2263
MroXI	GAANNNNTTC	1 cut(s)	166
MscI	TGGCCA	3 cut(s)	471, 980, 1022
MseI	TTAA	7 cut(s)	258, 284, 1143, 1476, 1700, 2432, 2895
MslI	CAYNNNNRTG	5 cut(s)	575, 687, 1074, 1232, 2105
Msp20I	TGGCCA	3 cut(s)	471, 980, 1022
MspA1I	CMGCKG	3 cut(s)	746, 1838, 3058
MspCI	CTTAAG	1 cut(s)	1142
MspI	CCGG	8 cut(s)	233, 633, 805, 1166, 1304, 1602, 2264, 2575
MunI	CAATTG	1 cut(s)	937
Mva1269I	GAATGC	1 cut(s)	294
MvaI	CCWGG	7 cut(s)	251, 430, 450, 669, 2165, 2586, 2810
MvnI	CGCG	2 cut(s)	322, 2838
MwoI	GCNNNNNNNGC	7 cut(s)	386, 863, 1007, 1055, 1282, 1673, 3167
NciI	CCSGG	3 cut(s)	233, 1304, 1602
NcoI	CCATGG	2 cut(s)	562, 609
NlaIV	GGNNCC	7 cut(s)	248, 1239, 1260, 1626, 1898, 1998, 2692
NmuCI	GTSAC	1 cut(s)	3331
NsiI	ATGCAT	3 cut(s)	296, 578, 886
NspI	RCATGY	2 cut(s)	576, 1073
NspV	TTCGAA	2 cut(s)	266, 3039
OliI	CACNNNNGTG	1 cut(s)	1232
PaeI	GCATGC	1 cut(s)	1073
PagI	TCATGA	1 cut(s)	2437
PauI	GCGCGC	1 cut(s)	2836
PceI	AGGCCT	1 cut(s)	1510
PctI	GAATGC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	1804, 1913, 3121
PflMI	CCANNNNNTGG	1 cut(s)	97
PinAI	ACCGGT	1 cut(s)	632
PleI	GAGTC	2 cut(s)	1894, 3273
PpsI	GAGTC	2 cut(s)	1894, 3273
Ppu21I	YACGTR	1 cut(s)	1910
PpuMI	RGGWCCY	1 cut(s)	1534
PsiI	TTATAA	2 cut(s)	1314, 2358
Psp124BI	GAGCTC	1 cut(s)	1272
Psp5II	RGGWCCY	1 cut(s)	1534
Psp6I	CCWGG	7 cut(s)	249, 428, 448, 667, 2163, 2584, 2808
PspFI	CCCAGC	1 cut(s)	3054
PspGI	CCWGG	7 cut(s)	249, 428, 448, 667, 2163, 2584, 2808
PspN4I	GGNNCC	7 cut(s)	248, 1239, 1260, 1626, 1898, 1998, 2692
PspPI	GGNCC	3 cut(s)	1534, 1625, 2266
PspPPI	RGGWCCY	1 cut(s)	1534
PstI	CTGCAG	2 cut(s)	130, 1618
PstNI	CAGNNNCTG	2 cut(s)	219, 1637
PsuI	RGATCY	4 cut(s)	1129, 1453, 2332, 2954
PteI	GCGCGC	1 cut(s)	2836
PvuII	CAGCTG	2 cut(s)	746, 3058
RsaI	GTAC	8 cut(s)	48, 334, 650, 1500, 1908, 2366, 2373, 2999
RsaNI	GTAC	8 cut(s)	47, 333, 649, 1499, 1907, 2365, 2372, 2998
RseI	CAYNNNNRTG	5 cut(s)	575, 687, 1074, 1232, 2105
SacI	GAGCTC	1 cut(s)	1272
SalI	GTCGAC	1 cut(s)	2885
SaqAI	TTAA	7 cut(s)	258, 284, 1143, 1476, 1700, 2432, 2895
Sau96I	GGNCC	3 cut(s)	1534, 1625, 2266
SchI	GAGTC	2 cut(s)	1895, 3274
SduI	GDGCHC	8 cut(s)	38, 1272, 1899, 2071, 2163, 2461, 2740, 3232
SfaNI	GCATC	8 cut(s)	844, 1045, 1576, 1673, 2262, 2340, 2533, 2849
SfcI	CTRYAG	3 cut(s)	126, 816, 1614
SfuI	TTCGAA	2 cut(s)	266, 3039
SinI	GGWCC	3 cut(s)	1534, 1625, 2266
SmiMI	CAYNNNNRTG	5 cut(s)	575, 687, 1074, 1232, 2105
SmlI	CTYRAG	3 cut(s)	1125, 1142, 2224
SmoI	CTYRAG	3 cut(s)	1125, 1142, 2224
SphI	GCATGC	1 cut(s)	1073
SseBI	AGGCCT	1 cut(s)	1510
SsiI	CCGC	8 cut(s)	322, 1606, 1763, 1838, 2251, 2789, 3107, 3225
SspI	AATATT	3 cut(s)	877, 2825, 3033
SspMI	CTAG	9 cut(s)	516, 963, 1263, 1664, 1865, 2124, 2615, 2958, 3026
SstI	GAGCTC	1 cut(s)	1272
StuI	AGGCCT	1 cut(s)	1510
StyI	CCWWGG	5 cut(s)	562, 609, 1917, 2230, 2614
TaiI	ACGT	4 cut(s)	510, 1912, 1969, 2542
TaqI	TCGA	5 cut(s)	266, 1398, 1884, 2886, 3039
TatI	WGTACW	3 cut(s)	46, 332, 2997
TauI	GCSGC	5 cut(s)	325, 1608, 1765, 2792, 3109
TfiI	GAWTC	3 cut(s)	1804, 1913, 3121
Tru1I	TTAA	7 cut(s)	258, 284, 1143, 1476, 1700, 2432, 2895
Tru9I	TTAA	7 cut(s)	258, 284, 1143, 1476, 1700, 2432, 2895
TscAI	CASTG	5 cut(s)	772, 868, 1548, 1822, 2047
TseFI	GTSAC	1 cut(s)	3331
Tsp45I	GTSAC	1 cut(s)	3331
TspDTI	ATGAA	9 cut(s)	279, 362, 869, 1509, 1725, 2034, 2426, 2439, 2454
TspGWI	ACGGA	1 cut(s)	1516
TspRI	CASTG	5 cut(s)	772, 868, 1548, 1822, 2047
Van91I	CCANNNNNTGG	1 cut(s)	97
Vha464I	CTTAAG	1 cut(s)	1142
VneI	GTGCAC	1 cut(s)	2736
VpaK11BI	GGWCC	3 cut(s)	1534, 1625, 2266
XapI	RAATTY	5 cut(s)	54, 165, 777, 2428, 3130
XceI	RCATGY	2 cut(s)	576, 1073
XcmI	CCANNNNNNNNNTGG	2 cut(s)	665, 2032
XmaJI	CCTAGG	1 cut(s)	2614
XmiI	GTMKAC	1 cut(s)	2886
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	9 cut(s)	516, 963, 1263, 1664, 1865, 2124, 2615, 2958, 3026
Zsp2I	ATGCAT	3 cut(s)	296, 578, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.