Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Forward (+)

13739596 .. 13740401

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGCAGCTTGGCTTATTTTCTGGCTAAGGATACTATTGACCATTTTAATACAGTGATCAAACCTGTAGTGTATTTGTCCATGTTCTACTTCTTTACCAACCCAAGATCTAGCTTTGCAGATAACTACATTGTTCTGGTCTGCCTCGTGTATTGTGTAACTGGTATAGCCTACGCGTTAGCAATATTTTTCGAACAAGGTGCAGCCCAACTATCGTCGGTCCTTATTCCAGTTGTTTTGACTCTTATAGCAACACGGCCACAAGATAGTGAACTTATGAAGAATTTAGCTAAGTTGTGCTACCCGAGGTGGGCTTTGGAAGCATTTGTGACTGCAAATGCTGAAAGGTATGCTGGAGTATGGCTGATAACTCGCTGCGGTTCACTTCTAAAGGCCGGCTATAATCTTCATAACTGGAATCTTTGTATAATCATCCTAACATCCATAGGTATAATTAGTCGGGCGATAGCATTCTTTTGTATGGTGACTTTTCAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

168

Amino Acids

18.79

Weight (kDa)

8.93

Isoelectric Point (pI)

31.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	176
AciI	CCGC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	174
AluBI	AGCT	3 cut(s)	9, 114, 290
AluI	AGCT	3 cut(s)	9, 114, 290
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	2 cut(s)	257, 393
ApeKI	GCWGC	3 cut(s)	6, 203, 375
ApoI	RAATTY	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	496
AsuII	TTCGAA	1 cut(s)	192
AvaI	CYCGRG	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	220
BauI	CACGAG	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	18, 215, 362
BceAI	ACGGC	1 cut(s)	272
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciVI	GTATCC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	57
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	25
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	3 cut(s)	7, 204, 376
BlsI	GCNGC	3 cut(s)	8, 205, 377
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	3 cut(s)	166, 230, 419
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	2 cut(s)	432, 440
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseNI	ACTGG	3 cut(s)	166, 230, 419
BseXI	GCAGC	3 cut(s)	18, 215, 362
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	259, 395
BsiHKCI	CYCGRG	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	2 cut(s)	259, 395
BsoBI	CYCGRG	1 cut(s)	304
Bsp119I	TTCGAA	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	57, 107
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	2 cut(s)	259, 395
BspFNI	CGCG	1 cut(s)	176
BspT104I	TTCGAA	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	3 cut(s)	166, 230, 419
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	2 cut(s)	57, 107
BssSI	CACGAG	1 cut(s)	146
Bst2BI	CACGAG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	2 cut(s)	27, 291
BstF5I	GGATG	2 cut(s)	432, 440
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	2 cut(s)	60, 110
BstMBI	GATC	2 cut(s)	57, 107
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	3 cut(s)	18, 215, 362
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	259, 395
BtsCI	GGATG	2 cut(s)	432, 440
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	397
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	220
CviAII	CATG	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	27, 291
DpnI	GATC	2 cut(s)	59, 109
DpnII	GATC	2 cut(s)	57, 107
EaeI	YGGCCR	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	304
FaeI	CATG	1 cut(s)	85
FatI	CATG	1 cut(s)	81
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	3 cut(s)	7, 204, 376
FokI	GGATG	2 cut(s)	419, 427
Fsp4HI	GCNGC	3 cut(s)	7, 204, 376
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	3 cut(s)	7, 204, 376
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	259, 395
HapII	CCGG	1 cut(s)	396
Hin1II	CATG	1 cut(s)	85
HinfI	GANTC	2 cut(s)	241, 418
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	2 cut(s)	272, 383
Hpy188I	TCNGA	1 cut(s)	495
Hpy8I	GTNNAC	2 cut(s)	272, 383
Hpy99I	CGWCG	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	3 cut(s)	119, 203, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	2 cut(s)	27, 291
Hsp92II	CATG	1 cut(s)	85
KroI	GCCGGC	1 cut(s)	395
KroNI	GCCGGC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	57, 107
LpnPI	CCDG	8 cut(s)	8, 78, 122, 147, 243, 339, 400, 409
Lsp1109I	GCAGC	3 cut(s)	18, 215, 362
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	3 cut(s)	157, 328, 484
MalI	GATC	2 cut(s)	59, 109
MboI	GATC	2 cut(s)	57, 107
MboII	GAAGA	2 cut(s)	292, 398
MflI	RGATCY	1 cut(s)	107
MluCI	AATT	2 cut(s)	283, 453
MluI	ACGCGT	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	2 cut(s)	155, 300
MroNI	GCCGGC	1 cut(s)	395
MseI	TTAA	1 cut(s)	48
MspI	CCGG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	470
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	320
NaeI	GCCGGC	1 cut(s)	397
NdeII	GATC	2 cut(s)	57, 107
NgoMIV	GCCGGC	1 cut(s)	395
NlaIII	CATG	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	328, 484
NspV	TTCGAA	1 cut(s)	192
PctI	GAATGC	1 cut(s)	470
PdiI	GCCGGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	418
PkrI	GCNGC	3 cut(s)	8, 205, 377
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	3 cut(s)	7, 204, 376
Sau3AI	GATC	2 cut(s)	57, 107
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	235
SetI	ASST	8 cut(s)	11, 67, 116, 202, 292, 311, 350, 451
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	192
SinI	GGWCC	1 cut(s)	220
Sse9I	AATT	2 cut(s)	283, 453
SsiI	CCGC	1 cut(s)	378
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	192
TaqII	GACCGA	1 cut(s)	208
TasI	AATT	2 cut(s)	283, 453
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	2 cut(s)	328, 484
TseI	GCWGC	3 cut(s)	6, 203, 375
Tsp45I	GTSAC	2 cut(s)	328, 484
TspDTI	ATGAA	2 cut(s)	293, 398
TspRI	CASTG	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	283
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.