Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Forward (+)

35246217 .. 35249752

Gene Structure 3536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG185000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGACGCTGGCGAGTACTATTTCTTAGAGTTGAACCCTCGGTTGCAGGTGGAGCACCCGATCACTAAGTGGATAGCAGAAATAAATCTGCTAGCAACCCAAGTTGCAGTTGGGATGGGCATTCCTCTTTGGCAAATTCCTGAGATAAGGCGGTTCTATGGAATGGAACATGGTAGTGGATATGATGCTTGGAGAAAGACGTTAGTGGTTGCCACTCCATTTGACTTTGACAAGGCAGAATCTAAAAGGCCAAAAGGTCATTGTGTTGCTGTGCGTGTAACAAGTGAGGATCCAGATGATGGCATTAAACTTGCTAGTGGGAAAGTTCAGGAGCTGAGTTTTAAAAGCAAGCCAAATGTTTGGGCGTACTTTTATGTTAAGATACCATTAGATGGATTCCAGGCAACCCCTATGCTTCAGATTCTAGATCGAAGTGGTAATGCAGCTTTGTTACCAGAGCACCTTGTATTTTCTACCTTACAGTATCTGCAAGAGCTTTATCTGAGGTTAGTTAACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

173

Amino Acids

19.71

Weight (kDa)

6.08

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_L_D2	PF02786	3 - 44	7.6e-08	Carbamoyl-phosphate synthase L chain, ATP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc36I	ACCTGC	1 cut(s)	37
AccB7I	CCANNNNNTGG	2 cut(s)	299, 392
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	2 cut(s)	284, 297
AcsI	RAATTY	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	401
AdeI	CACNNNGTG	1 cut(s)	69
AfaI	GTAC	2 cut(s)	17, 368
AfiI	CCNNNNNNNGG	2 cut(s)	299, 392
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	3 cut(s)	334, 446, 496
AluI	AGCT	3 cut(s)	334, 446, 496
Alw21I	GWGCWC	2 cut(s)	57, 462
AlwI	GGATC	2 cut(s)	284, 297
AlwNI	CAGNNNCTG	2 cut(s)	334, 487
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	135
AsuNHI	GCTAGC	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	289
Bbv12I	GWGCWC	2 cut(s)	57, 462
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	3 cut(s)	109, 293, 386
BciT130I	CCWGG	1 cut(s)	401
BfaI	CTAG	3 cut(s)	92, 315, 425
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
BmcAI	AGTACT	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	1 cut(s)	175
BmtI	GCTAGC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 392
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	299, 392
BseMII	CTCAG	3 cut(s)	132, 326, 494
BseXI	GCAGC	1 cut(s)	455
BshFI	GGCC	1 cut(s)	250
BsiHKAI	GWGCWC	2 cut(s)	57, 462
BslI	CCNNNNNNNGG	2 cut(s)	299, 392
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	57, 462
Bsp143I	GATC	3 cut(s)	60, 289, 427
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	3 cut(s)	133, 327, 495
BspLI	GGNNCC	1 cut(s)	291
BspMI	ACCTGC	1 cut(s)	37
BspOI	GCTAGC	1 cut(s)	95
BspPI	GGATC	2 cut(s)	284, 297
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	3 cut(s)	60, 289, 427
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	483
BstC8I	GCNNGC	3 cut(s)	10, 93, 350
BstDEI	CTNAG	5 cut(s)	25, 66, 141, 335, 503
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	3 cut(s)	63, 292, 430
BstMBI	GATC	3 cut(s)	60, 289, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	289
BstXI	CCANNNNNNTGG	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	3 cut(s)	10, 93, 350
CaiI	CAGNNNCTG	2 cut(s)	334, 487
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	16, 367
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	5 cut(s)	250, 334, 352, 446, 496
CviKI_1	RGCY	5 cut(s)	250, 334, 352, 446, 496
CviQI	GTAC	2 cut(s)	16, 367
DdeI	CTNAG	5 cut(s)	25, 66, 141, 335, 503
DpnI	GATC	3 cut(s)	62, 291, 429
DpnII	GATC	3 cut(s)	60, 289, 427
DraI	TTTAAA	1 cut(s)	343
DraIII	CACNNNGTG	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	399
FaeI	CATG	1 cut(s)	173
FaiI	YATR	5 cut(s)	159, 171, 183, 375, 413
FatI	CATG	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	3 cut(s)	92, 315, 425
GluI	GCNGC	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	250
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	3 cut(s)	239, 396, 421
HpaI	GTTAAC	1 cut(s)	514
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	2 cut(s)	420, 504
Hpy188III	TCNNGA	4 cut(s)	140, 293, 329, 425
Hpy8I	GTNNAC	1 cut(s)	514
HpyCH4III	ACNGT	1 cut(s)	483
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	4 cut(s)	46, 107, 443, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	5 cut(s)	25, 66, 141, 335, 503
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	1 cut(s)	173
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	60, 289, 427
LmnI	GCTCC	2 cut(s)	52, 331
LpnPI	CCDG	7 cut(s)	32, 153, 306, 314, 386, 413, 468
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	3 cut(s)	92, 315, 425
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	277, 450
MalI	GATC	3 cut(s)	62, 291, 429
MboI	GATC	3 cut(s)	60, 289, 427
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	57, 462
MluCI	AATT	1 cut(s)	135
MnlI	CCTC	4 cut(s)	48, 135, 280, 498
MseI	TTAA	4 cut(s)	306, 342, 378, 513
MslI	CAYNNNNRTG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	3 cut(s)	60, 289, 427
NheI	GCTAGC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	1 cut(s)	291
PaqCI	CACCTGC	1 cut(s)	37
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	239, 396, 421
PflMI	CCANNNNNTGG	2 cut(s)	299, 392
PkrI	GCNGC	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	291
PstNI	CAGNNNCTG	2 cut(s)	334, 487
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	2 cut(s)	17, 368
RsaNI	GTAC	2 cut(s)	16, 367
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	4 cut(s)	306, 342, 378, 513
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	3 cut(s)	60, 289, 427
ScaI	AGTACT	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	2 cut(s)	57, 462
SetI	ASST	9 cut(s)	51, 203, 259, 336, 448, 465, 479, 498, 509
SfaNI	GCATC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	151
SspMI	CTAG	3 cut(s)	92, 315, 425
StyD4I	CCNGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	483
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	430
TasI	AATT	1 cut(s)	135
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	3 cut(s)	239, 396, 421
Tru1I	TTAA	4 cut(s)	306, 342, 378, 513
Tru9I	TTAA	4 cut(s)	306, 342, 378, 513
TseI	GCWGC	1 cut(s)	443
Van91I	CCANNNNNTGG	2 cut(s)	299, 392
XapI	RAATTY	1 cut(s)	135
XbaI	TCTAGA	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	3 cut(s)	92, 315, 425
ZrmI	AGTACT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.