Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Forward (+)

19333348 .. 19356540

Gene Structure 23193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGGGTGGTAGGCTGGGCCTTTGGGCTTCAACCCACTTCTCTTTTCTTTCTCTAGCTTGGGCTGAGTCTTTTGAGGGTTTGTCATATGCTAGTCCTATACTGCAGAGTGCAGAGGTTTTAGGCGTCAAGCGTTGTCAACTAAATAAATGGATTGGCATGGATTTCAATACGTGTAGGTGGGAGTGTAGTGAACAAAACCCACCGAGCAATTCATCCTATTGTGGCCAGAGGAGGAAGAATGAAGGAGGAGAAATGGCTACAGTAGCCGAGCTCGGGAGAGAAACTGCAGATCGACGACACCACCACGATGACCTCGACCGAGAGTACGAGATGGAGGACGTAGTACGACGTTGCACCGCCACACCACGTACCGCAAGAGGTTACTCCGGCACAAGGAGCTCGGCTCTCGAGTCCATGCGGTCGATTCGCACTCTAAACCCTCTTCTATCCAACTACAAATGTTCCCAATATATAAGGCGGTTCAATGGAATGGAACATGGTAGTGGATATGATGGTTGGAGAAAGACGTCGGTGGTTGCCACTCCATTTGACTTTGACAAGGCAAAATCTAAAAGGCCAAAAGGTCATTGTGTTGCTGTGCGTGTAACAAGTGAGGATCCGGATGATGGCTTTAAACCTGCTAGTGGGAAAGTTCAACTACACGAAGTCCCATCGGATATCTTGAGTTTGCAGCAAGCTGCGGATCCTAGACCTCGGCCAAAATTCCCTGCGCTTCTTGTCCGACAGCCAACAAGAATCTCCGCCAAGTTTCCTTCGTCGTTCGCCAAGCTTCCTCCGTCATCCACCAAGCTTCCTCCGCCAAGTGTCAATCTCTTTGAGCAAGTTAAATCACCGCCACATACTCCAAGGCAAACTTACCGGAGCCGTCAAGTGCCAGCAACGCTAGCACCAGCTCCAGCAGCAAACATAATGAGATCATTGAACTTCTTGACGGAGCTCAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

323

Amino Acids

36.14

Weight (kDa)

9.41

Isoelectric Point (pI)

59.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	649
AccIII	TCCGGA	1 cut(s)	622
AciI	CCGC	8 cut(s)	360, 375, 421, 481, 704, 765, 821, 857
AclWI	GGATC	4 cut(s)	614, 627, 701, 714
AcoI	YGGCCR	2 cut(s)	226, 719
AcsI	RAATTY	1 cut(s)	725
AcyI	GRCGYC	2 cut(s)	126, 530
AfaI	GTAC	3 cut(s)	329, 348, 373
AfiI	CCNNNNNNNGG	4 cut(s)	276, 396, 629, 647
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	5 cut(s)	33, 169, 487, 659, 946
AluBI	AGCT	8 cut(s)	59, 274, 402, 701, 793, 814, 917, 961
AluI	AGCT	8 cut(s)	59, 274, 402, 701, 793, 814, 917, 961
Alw21I	GWGCWC	3 cut(s)	276, 404, 963
AlwI	GGATC	4 cut(s)	614, 627, 701, 714
Ama87I	CYCGRG	2 cut(s)	275, 410
Aor13HI	TCCGGA	1 cut(s)	622
AoxI	GGCC	4 cut(s)	19, 226, 578, 719
ApeKI	GCWGC	3 cut(s)	694, 701, 923
ApoI	RAATTY	1 cut(s)	725
AspLEI	GCGC	1 cut(s)	736
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	846
AsuNHI	GCTAGC	1 cut(s)	907
AvaI	CYCGRG	2 cut(s)	275, 410
BalI	TGGCCA	1 cut(s)	228
BamHI	GGATCC	2 cut(s)	619, 706
BanII	GRGCYC	3 cut(s)	276, 404, 963
Bbv12I	GWGCWC	3 cut(s)	276, 404, 963
BbvI	GCAGC	3 cut(s)	688, 706, 935
BccI	CCATC	4 cut(s)	328, 509, 623, 682
BceAI	ACGGC	1 cut(s)	873
BfaI	CTAG	5 cut(s)	56, 93, 645, 711, 908
BfmI	CTRYAG	3 cut(s)	104, 261, 288
BfuAI	ACCTGC	1 cut(s)	649
BisI	GCNGC	3 cut(s)	695, 702, 924
BlsI	GCNGC	3 cut(s)	696, 703, 925
BmeT110I	CYCGRG	2 cut(s)	275, 410
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	3 cut(s)	621, 708, 887
BmtI	GCTAGC	1 cut(s)	911
BplI	GAGNNNNNCTC	2 cut(s)	391, 423
BpmI	CTGGAG	1 cut(s)	903
BpuEI	CTTGAG	1 cut(s)	706
BsaAI	YACGTR	2 cut(s)	174, 371
BsaHI	GRCGYC	2 cut(s)	126, 530
BsaJI	CCNNGG	2 cut(s)	716, 869
BsaWI	WCCGGW	2 cut(s)	622, 882
Bsc4I	CCNNNNNNNGG	4 cut(s)	276, 396, 629, 647
BseAI	TCCGGA	1 cut(s)	622
BseDI	CCNNGG	2 cut(s)	716, 869
BseGI	GGATG	3 cut(s)	215, 631, 803
BseLI	CCNNNNNNNGG	4 cut(s)	276, 396, 629, 647
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	2 cut(s)	247, 264
BseXI	GCAGC	3 cut(s)	688, 706, 935
BseYI	CCCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	132
Bsh1285I	CGRYCG	2 cut(s)	322, 425
BshFI	GGCC	4 cut(s)	21, 228, 580, 721
BsiEI	CGRYCG	2 cut(s)	322, 425
BsiHKAI	GWGCWC	3 cut(s)	276, 404, 963
BsiHKCI	CYCGRG	2 cut(s)	275, 410
BsiSI	CCGG	3 cut(s)	390, 623, 883
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	4 cut(s)	276, 396, 629, 647
BsmFI	GGGAC	1 cut(s)	656
BsnI	GGCC	4 cut(s)	21, 228, 580, 721
BsoBI	CYCGRG	2 cut(s)	275, 410
Bsp1286I	GDGCHC	3 cut(s)	276, 404, 963
Bsp13I	TCCGGA	1 cut(s)	622
Bsp143I	GATC	4 cut(s)	292, 619, 706, 938
BspACI	CCGC	8 cut(s)	360, 375, 421, 481, 704, 765, 821, 857
BspANI	GGCC	4 cut(s)	21, 228, 580, 721
BspCNI	CTCAG	1 cut(s)	58
BspEI	TCCGGA	1 cut(s)	622
BspLI	GGNNCC	3 cut(s)	621, 708, 887
BspMAI	CTGCAG	2 cut(s)	108, 292
BspMI	ACCTGC	1 cut(s)	649
BspOI	GCTAGC	1 cut(s)	911
BspPI	GGATC	4 cut(s)	614, 627, 701, 714
BssECI	CCNNGG	2 cut(s)	716, 869
BssMI	GATC	4 cut(s)	292, 619, 706, 938
BssNI	GRCGYC	2 cut(s)	126, 530
BssT1I	CCWWGG	1 cut(s)	869
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	1 cut(s)	450
BstACI	GRCGYC	2 cut(s)	126, 530
BstBAI	YACGTR	2 cut(s)	174, 371
BstC8I	GCNNGC	3 cut(s)	699, 900, 909
BstDEI	CTNAG	2 cut(s)	66, 962
BstF5I	GGATG	3 cut(s)	215, 631, 803
BstHHI	GCGC	1 cut(s)	736
BstKTI	GATC	4 cut(s)	295, 622, 709, 941
BstMBI	GATC	4 cut(s)	292, 619, 706, 938
BstMCI	CGRYCG	2 cut(s)	322, 425
BstMWI	GCNNNNNNNGC	6 cut(s)	266, 399, 820, 904, 908, 923
BstSFI	CTRYAG	3 cut(s)	104, 261, 288
BstV1I	GCAGC	3 cut(s)	688, 706, 935
BstX2I	RGATCY	2 cut(s)	619, 706
BstYI	RGATCY	2 cut(s)	619, 706
BsuRI	GGCC	4 cut(s)	21, 228, 580, 721
BtsCI	GGATG	3 cut(s)	215, 631, 803
BtsIMutI	CAGTG	1 cut(s)	970
BveI	ACCTGC	1 cut(s)	649
Cac8I	GCNNGC	3 cut(s)	699, 900, 909
CfoI	GCGC	1 cut(s)	736
Cfr13I	GGNCC	1 cut(s)	19
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	328, 347, 372
CspCI	CAANNNNNGTGG	2 cut(s)	532, 567
CviAII	CATG	3 cut(s)	160, 418, 500
CviQI	GTAC	3 cut(s)	328, 347, 372
DdeI	CTNAG	2 cut(s)	66, 962
DpnI	GATC	4 cut(s)	294, 621, 708, 940
DpnII	GATC	4 cut(s)	292, 619, 706, 938
DraI	TTTAAA	1 cut(s)	637
EaeI	YGGCCR	2 cut(s)	226, 719
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
EciI	GGCGGA	2 cut(s)	754, 810
Ecl136II	GAGCTC	3 cut(s)	274, 402, 961
Eco130I	CCWWGG	1 cut(s)	869
Eco24I	GRGCYC	3 cut(s)	276, 404, 963
Eco32I	GATATC	1 cut(s)	682
Eco53kI	GAGCTC	3 cut(s)	274, 402, 961
Eco88I	CYCGRG	2 cut(s)	275, 410
EcoICRI	GAGCTC	3 cut(s)	274, 402, 961
EcoRV	GATATC	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	869
EcoT38I	GRGCYC	3 cut(s)	276, 404, 963
ErhI	CCWWGG	1 cut(s)	869
FaeI	CATG	3 cut(s)	163, 421, 503
FalI	AAGNNNNNCTT	2 cut(s)	862, 894
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	3 cut(s)	159, 417, 499
FauNDI	CATATG	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	695, 702, 924
FokI	GGATG	3 cut(s)	202, 638, 790
FriOI	GRGCYC	3 cut(s)	276, 404, 963
Fsp4HI	GCNGC	3 cut(s)	695, 702, 924
FspBI	CTAG	5 cut(s)	56, 93, 645, 711, 908
GlaI	GCGC	1 cut(s)	735
GluI	GCNGC	3 cut(s)	695, 702, 924
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	903
HaeIII	GGCC	4 cut(s)	21, 228, 580, 721
HapII	CCGG	3 cut(s)	390, 623, 883
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	736
Hin1I	GRCGYC	2 cut(s)	126, 530
Hin1II	CATG	3 cut(s)	163, 421, 503
Hin6I	GCGC	1 cut(s)	734
HinP1I	GCGC	1 cut(s)	734
HincII	GTYRAC	1 cut(s)	140
HindII	GTYRAC	1 cut(s)	140
HindIII	AAGCTT	2 cut(s)	791, 812
HinfI	GANTC	4 cut(s)	68, 413, 427, 759
HpaII	CCGG	3 cut(s)	390, 623, 883
HphI	GGTGA	1 cut(s)	846
Hpy166II	GTNNAC	2 cut(s)	140, 194
Hpy188I	TCNGA	2 cut(s)	679, 746
Hpy188III	TCNNGA	5 cut(s)	277, 410, 623, 685, 952
Hpy8I	GTNNAC	2 cut(s)	140, 194
Hpy99I	CGWCG	4 cut(s)	300, 354, 535, 784
HpyAV	CCTTC	2 cut(s)	239, 786
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	5 cut(s)	173, 342, 352, 370, 530
HpyCH4V	TGCA	5 cut(s)	106, 113, 290, 357, 694
HpyF10VI	GCNNNNNNNGC	6 cut(s)	266, 399, 820, 904, 908, 923
HpyF3I	CTNAG	2 cut(s)	66, 962
HpySE526I	ACGT	5 cut(s)	173, 342, 352, 370, 530
Hsp92I	GRCGYC	2 cut(s)	126, 530
Hsp92II	CATG	3 cut(s)	163, 421, 503
HspAI	GCGC	1 cut(s)	734
Kpn2I	TCCGGA	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	292, 619, 706, 938
LmnI	GCTCC	4 cut(s)	399, 885, 922, 958
Lsp1109I	GCAGC	3 cut(s)	688, 706, 935
MaeI	CTAG	5 cut(s)	56, 93, 645, 711, 908
MaeII	ACGT	5 cut(s)	173, 342, 352, 370, 530
MaeIII	GTNAC	2 cut(s)	383, 607
MalI	GATC	4 cut(s)	294, 621, 708, 940
MboI	GATC	4 cut(s)	292, 619, 706, 938
MboII	GAAGA	2 cut(s)	250, 437
MflI	RGATCY	2 cut(s)	619, 706
MhlI	GDGCHC	3 cut(s)	276, 404, 963
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	2 cut(s)	211, 725
MluNI	TGGCCA	1 cut(s)	228
MlyI	GAGTC	2 cut(s)	77, 422
MmeI	TCCRAC	3 cut(s)	477, 500, 769
Mox20I	TGGCCA	1 cut(s)	228
MroI	TCCGGA	1 cut(s)	622
MscI	TGGCCA	1 cut(s)	228
MseI	TTAA	2 cut(s)	636, 849
MslI	CAYNNNNRTG	2 cut(s)	309, 504
Msp20I	TGGCCA	1 cut(s)	228
MspI	CCGG	3 cut(s)	390, 623, 883
MwoI	GCNNNNNNNGC	6 cut(s)	266, 399, 820, 904, 908, 923
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	4 cut(s)	292, 619, 706, 938
NheI	GCTAGC	1 cut(s)	907
NlaIII	CATG	3 cut(s)	163, 421, 503
NlaIV	GGNNCC	3 cut(s)	621, 708, 887
NmeAIII	GCCGAG	3 cut(s)	295, 383, 697
PaeR7I	CTCGAG	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	427, 759
PkrI	GCNGC	3 cut(s)	696, 703, 925
PleI	GAGTC	2 cut(s)	76, 421
PpsI	GAGTC	2 cut(s)	76, 421
Ppu21I	YACGTR	2 cut(s)	174, 371
Psp124BI	GAGCTC	3 cut(s)	276, 404, 963
PspFI	CCCAGC	1 cut(s)	16
PspN4I	GGNNCC	3 cut(s)	621, 708, 887
PspPI	GGNCC	1 cut(s)	19
PstI	CTGCAG	2 cut(s)	108, 292
PsuI	RGATCY	2 cut(s)	619, 706
RsaI	GTAC	3 cut(s)	329, 348, 373
RsaNI	GTAC	3 cut(s)	328, 347, 372
RseI	CAYNNNNRTG	2 cut(s)	309, 504
SacI	GAGCTC	3 cut(s)	276, 404, 963
SaqAI	TTAA	2 cut(s)	636, 849
SatI	GCNGC	3 cut(s)	695, 702, 924
Sau3AI	GATC	4 cut(s)	292, 619, 706, 938
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	2 cut(s)	77, 422
SduI	GDGCHC	3 cut(s)	276, 404, 963
SfcI	CTRYAG	3 cut(s)	104, 261, 288
Sfr274I	CTCGAG	1 cut(s)	410
SlaI	CTCGAG	1 cut(s)	410
SmiMI	CAYNNNNRTG	2 cut(s)	309, 504
SmlI	CTYRAG	2 cut(s)	410, 685
SmoI	CTYRAG	2 cut(s)	410, 685
Sse9I	AATT	2 cut(s)	211, 725
SsiI	CCGC	8 cut(s)	360, 375, 421, 481, 704, 765, 821, 857
SspMI	CTAG	5 cut(s)	56, 93, 645, 711, 908
SstI	GAGCTC	3 cut(s)	276, 404, 963
StyI	CCWWGG	1 cut(s)	869
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	5 cut(s)	176, 345, 355, 373, 533
TaqI	TCGA	4 cut(s)	295, 318, 411, 425
TaqII	GACCGA	1 cut(s)	336
TasI	AATT	2 cut(s)	211, 725
TfiI	GAWTC	2 cut(s)	427, 759
Tru1I	TTAA	2 cut(s)	636, 849
Tru9I	TTAA	2 cut(s)	636, 849
TscAI	CASTG	1 cut(s)	970
TseI	GCWGC	3 cut(s)	694, 701, 923
TspDTI	ATGAA	2 cut(s)	204, 258
TspGWI	ACGGA	2 cut(s)	789, 971
TspRI	CASTG	1 cut(s)	970
XapI	RAATTY	1 cut(s)	725
XhoI	CTCGAG	1 cut(s)	410
XspI	CTAG	5 cut(s)	56, 93, 645, 711, 908
ZraI	GACGTC	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.