Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Forward (+)

61868745 .. 61871200

Gene Structure 2456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAACATGGTAGTGGATATGATGCTTGGAGAAAGACGTCAGTGGTTGCCACTCCATTTGACTTTGACAAGGAAGAATCTAAAAGGCCAAAAGGTCACCGTGTTGCTGTGCGTGTAACAAGTGAGGATCCAGATGATGGCTTTAAACTTGCTAGTGGGAAAGTTCAGGAGCTGAGTTTTAAAAGCAAGCCAAATGTTTGGGCGTACTTTTCTGTTAAGGCTTGTGGTAGTGGTCGGAGTTTATCATTTTGGAACCTTCCCGCTTCGAATGCATTTCAAGGACTTCAACTCGTGCATCGATCTTATGGTCAGCGTACGGTAGTCAATTTGAGTGCCTCGAACATGGATGATGCTAAAGCCCGTGCTGCAACTGCGCTTGAGGTCTCGCGTGAGGGTAATCAGGTTATGATTGAAGATATTGGGAAGCAGATTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

145

Amino Acids

16.01

Weight (kDa)

9.27

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccII	CGCG	1 cut(s)	388
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	2 cut(s)	122, 135
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	2 cut(s)	206, 316
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	278, 287, 413
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	2 cut(s)	122, 135
AlwNI	CAGNNNCTG	1 cut(s)	172
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	89
AsuII	TTCGAA	1 cut(s)	266
BamHI	GGATCC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	153
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
BmiI	GGNNCC	2 cut(s)	129, 254
BmsI	GCATC	3 cut(s)	13, 304, 340
Bpu14I	TTCGAA	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	398
Bsa29I	ATCGAT	1 cut(s)	298
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseCI	ATCGAT	1 cut(s)	298
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	388
BshFI	GGCC	1 cut(s)	88
BshVI	ATCGAT	1 cut(s)	298
BsiWI	CGTACG	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	388
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	88
Bso31I	GGTCTC	1 cut(s)	388
Bsp119I	TTCGAA	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	127, 299
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	165
BspDI	ATCGAT	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	129, 254
BspPI	GGATC	2 cut(s)	122, 135
BspT104I	TTCGAA	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	388
BssMI	GATC	2 cut(s)	127, 299
BssNI	GRCGYC	1 cut(s)	38
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	101, 319
BstACI	GRCGYC	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	173
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	2 cut(s)	130, 302
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	2 cut(s)	127, 299
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 365, 371
BstPI	GGTNACC	1 cut(s)	95
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	127
BstXI	CCANNNNNNTGG	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	88
BsuTUI	ATCGAT	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	188
CaiI	CAGNNNCTG	1 cut(s)	172
CfoI	GCGC	1 cut(s)	376
ClaI	ATCGAT	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	205, 315
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviAII	CATG	2 cut(s)	8, 343
CviJI	RGCY	6 cut(s)	88, 141, 172, 190, 221, 359
CviKI_1	RGCY	6 cut(s)	88, 141, 172, 190, 221, 359
CviQI	GTAC	2 cut(s)	205, 315
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	2 cut(s)	129, 301
DpnII	GATC	2 cut(s)	127, 299
DraI	TTTAAA	2 cut(s)	145, 181
Eco31I	GGTCTC	1 cut(s)	388
Eco91I	GGTNACC	1 cut(s)	95
EcoO65I	GGTNACC	1 cut(s)	95
EcoT22I	ATGCAT	1 cut(s)	274
FaeI	CATG	2 cut(s)	11, 346
FaiI	YATR	5 cut(s)	9, 21, 306, 344, 407
FatI	CATG	2 cut(s)	7, 342
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	11, 346
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HinfI	GANTC	1 cut(s)	77
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	2 cut(s)	131, 167
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	101, 319
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	272, 295, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 365, 371
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	11, 346
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	127, 299
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	3 cut(s)	144, 152, 386
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	3 cut(s)	13, 304, 340
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	95, 115
MalI	GATC	2 cut(s)	129, 301
MboI	GATC	2 cut(s)	127, 299
MboII	GAAGA	2 cut(s)	86, 425
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	4 cut(s)	118, 346, 373, 385
Mph1103I	ATGCAT	1 cut(s)	274
MseI	TTAA	4 cut(s)	144, 180, 216, 432
MslI	CAYNNNNRTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	274
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	3 cut(s)	269, 365, 371
NdeII	GATC	2 cut(s)	127, 299
NlaIII	CATG	2 cut(s)	11, 346
NlaIV	GGNNCC	2 cut(s)	129, 254
NmuCI	GTSAC	1 cut(s)	95
NsiI	ATGCAT	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	266
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	77
Pfl23II	CGTACG	1 cut(s)	314
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	367
PspEI	GGTNACC	1 cut(s)	95
PspLI	CGTACG	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	129, 254
PstNI	CAGNNNCTG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	2 cut(s)	206, 316
RsaNI	GTAC	2 cut(s)	205, 315
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	144, 180, 216, 432
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	2 cut(s)	127, 299
SetI	ASST	6 cut(s)	41, 97, 174, 258, 384, 405
SfaNI	GCATC	3 cut(s)	13, 304, 340
SfuI	TTCGAA	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	325
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	101, 319
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	3 cut(s)	266, 298, 338
TasI	AATT	1 cut(s)	325
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	4 cut(s)	144, 180, 216, 432
Tru9I	TTAA	4 cut(s)	144, 180, 216, 432
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	95
TspRI	CASTG	1 cut(s)	48
Van91I	CCANNNNNTGG	1 cut(s)	137
XspI	CTAG	1 cut(s)	153
ZraI	GACGTC	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.