Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001624

Physical Location & Seq

Genomic Coordinates Reverse (-)

43062007 .. 43064778

Gene Structure 2772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003015

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGCATTCTTCTTTGGCAAATTCCTGAGATAAGGCGGTTCTATGGAATGGAACATGGTAGTGGATATGATGCTTGGAGAAAGACGTCAGTGGTTGCCACTCCATTTGACTTTGACAAGGTAGAATCTAAAAGGCCAAAAGGTCATTGTGTTGCTGTGCGCGTAACAAGTGAGGATCCAGATGATGGCTTTAAACCTGCTAGTGGGAAAGCTGGTACAGGTGGGCAAATGTCTGATAGCATTTTCATTGCTAAGATACCATTAGATGGATTCCAAGCAACCCCTATGCTTCAGATTCTAGATCGAAGTGGTAATGCAGCTTCGTTACCAGAGCACCCTACGAATGCAGCTACACGAAGTTCCATCAGATATCTTGAGTTTACAGCAACTACGGATCCTAGACCTCAGCCAAAATTCCCTGCAGTCGGTTCCAGTGTTCACAGTGCTCATTGTAGGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0016020 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022414 GO:0022622 GO:0030497 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944 GO:0072330 GO:0090421 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00254 ko00620 ko00640 ko01100 ko01110 ko01212 ko04152 ko04910 ko04922 map00061 map00254 map00620 map00640 map01100 map01110 map01212 map04152 map04910 map04922

Pfam Domains

Protein Families

ACC_central Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2 Carboxyl_trans

Protein Analysis

154

Amino Acids

16.69

Weight (kDa)

8.62

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53390
fragaria_vesca	FvH4_6g32451 FvH4_7g18960 FvH4_7g18960
malus_domestica	MD00G1214200.v1.1
prunus_persica	Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1 Prupe.2G210600_v2.0.a1
pyrus_communis	pycom01g13180 pycom01g13190 pycom07g16600
rosa_chinensis	RchiOBHm_Chr1g0360271 RchiOBHm_Chr1g0362891 RchiOBHm_Chr2g0140691 RchiOBHm_Chr2g0140701
rosa_laevigata	RLG00000003015 RLG00000019892 RLG00000019893 RLG00000027614
rosa_multiflora	Rmu_co8315067.1_g000001 Rmu_sc0001502.1_g000011 Rmu_sc0003342.1_g000012 Rmu_sc0003342.1_g000013
rosa_roxburghii	Rroxscaffold_1G00043370 Rroxscaffold_2G00104570 Rroxscaffold_2G00104580 Rroxscaffold_3G00227580 Rroxscaffold_4G00293670 Rroxscaffold_5G00347780 Rroxscaffold_5G00347800
rosa_rugosa	Rorug01G0302100 Rorug02G0364100 Rorug02G0364100 Rorug03G0261700
rosa_samantha	Rh1AG185000 Rh1AG311300 Rh1BG274400 Rh1DG305200 Rh2AG327100 Rh2AG415900 Rh2BG425300 Rh2BG425400 Rh2DG435400 Rh4AG110400 Rh6DG223100 Rh7BG077900
rosa_wichuraiana	Rw1G027590 Rw2G034020 Rw2G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	460
AatII	GACGTC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	205
AccB7I	CCANNNNNTGG	2 cut(s)	185, 266
AccII	CGCG	1 cut(s)	162
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	4 cut(s)	170, 183, 389, 402
AcsI	RAATTY	2 cut(s)	21, 413
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	86
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	4 cut(s)	185, 203, 266, 425
AluBI	AGCT	3 cut(s)	212, 320, 350
AluI	AGCT	3 cut(s)	212, 320, 350
Alw21I	GWGCWC	2 cut(s)	336, 448
AlwI	GGATC	4 cut(s)	170, 183, 389, 402
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	317, 347
ApoI	RAATTY	2 cut(s)	21, 413
AspLEI	GCGC	1 cut(s)	162
BamHI	GGATCC	2 cut(s)	175, 394
BarI	GAAGNNNNNNTAC	2 cut(s)	304, 336
Bbv12I	GWGCWC	2 cut(s)	336, 448
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	329, 359
BccI	CCATC	3 cut(s)	179, 260, 371
BfaI	CTAG	3 cut(s)	201, 299, 399
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	2 cut(s)	318, 348
BlsI	GCNGC	2 cut(s)	319, 349
BmiI	GGNNCC	3 cut(s)	177, 396, 430
BmsI	GCATC	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 203, 266, 425
Bse1I	ACTGG	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	4 cut(s)	185, 203, 266, 425
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	18, 419
BseNI	ACTGG	1 cut(s)	432
BseXI	GCAGC	2 cut(s)	329, 359
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	336, 448
BslI	CCNNNNNNNGG	4 cut(s)	185, 203, 266, 425
BsmI	GAATGC	2 cut(s)	6, 349
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	336, 448
Bsp143I	GATC	3 cut(s)	175, 301, 394
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	2 cut(s)	19, 418
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	3 cut(s)	177, 396, 430
BspMAI	CTGCAG	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	4 cut(s)	170, 183, 389, 402
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	432
BssMI	GATC	3 cut(s)	175, 301, 394
BssNI	GRCGYC	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	443
BstACI	GRCGYC	1 cut(s)	86
BstDEI	CTNAG	3 cut(s)	27, 252, 405
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	3 cut(s)	178, 304, 397
BstMBI	GATC	3 cut(s)	175, 301, 394
BstSFI	CTRYAG	1 cut(s)	420
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	329, 359
BstX2I	RGATCY	2 cut(s)	175, 394
BstYI	RGATCY	2 cut(s)	175, 394
BsuRI	GGCC	1 cut(s)	136
BtsIMutI	CAGTG	3 cut(s)	96, 439, 448
BveI	ACCTGC	1 cut(s)	205
CfoI	GCGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	216
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	6 cut(s)	136, 189, 212, 320, 350, 409
CviKI_1	RGCY	6 cut(s)	136, 189, 212, 320, 350, 409
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	3 cut(s)	27, 252, 405
DpnI	GATC	3 cut(s)	177, 303, 396
DpnII	GATC	3 cut(s)	175, 301, 394
DraI	TTTAAA	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	371
FaeI	CATG	1 cut(s)	59
FaiI	YATR	5 cut(s)	45, 57, 69, 287, 460
FatI	CATG	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	318, 348
Fsp4HI	GCNGC	2 cut(s)	318, 348
FspBI	CTAG	3 cut(s)	201, 299, 399
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	318, 348
HaeIII	GGCC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	162
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	125, 270, 295
Hpy166II	GTNNAC	2 cut(s)	381, 439
Hpy188I	TCNGA	3 cut(s)	235, 294, 368
Hpy188III	TCNNGA	4 cut(s)	26, 179, 299, 374
Hpy8I	GTNNAC	2 cut(s)	381, 439
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	3 cut(s)	317, 347, 422
HpyF3I	CTNAG	3 cut(s)	27, 252, 405
HpySE526I	ACGT	1 cut(s)	86
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	175, 301, 394
LpnPI	CCDG	8 cut(s)	39, 192, 198, 204, 210, 342, 432, 445
Lsp1109I	GCAGC	2 cut(s)	329, 359
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	3 cut(s)	201, 299, 399
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	163, 324
MalI	GATC	3 cut(s)	177, 303, 396
MboI	GATC	3 cut(s)	175, 301, 394
MflI	RGATCY	2 cut(s)	175, 394
MhlI	GDGCHC	2 cut(s)	336, 448
MluCI	AATT	2 cut(s)	21, 413
MnlI	CCTC	2 cut(s)	166, 414
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	60
Mva1269I	GAATGC	2 cut(s)	6, 349
MvnI	CGCG	1 cut(s)	162
NdeII	GATC	3 cut(s)	175, 301, 394
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	3 cut(s)	177, 396, 430
PctI	GAATGC	2 cut(s)	6, 349
PfeI	GAWTC	3 cut(s)	125, 270, 295
PflMI	CCANNNNNTGG	2 cut(s)	185, 266
PkrI	GCNGC	2 cut(s)	319, 349
PsiI	TTATAA	1 cut(s)	460
PspN4I	GGNNCC	3 cut(s)	177, 396, 430
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	2 cut(s)	175, 394
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	318, 348
Sau3AI	GATC	3 cut(s)	175, 301, 394
SduI	GDGCHC	2 cut(s)	336, 448
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	21, 413
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	3 cut(s)	201, 299, 399
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	304
TasI	AATT	2 cut(s)	21, 413
TfiI	GAWTC	3 cut(s)	125, 270, 295
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	3 cut(s)	96, 439, 448
TseI	GCWGC	2 cut(s)	317, 347
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	3 cut(s)	96, 439, 448
Van91I	CCANNNNNTGG	2 cut(s)	185, 266
XapI	RAATTY	2 cut(s)	21, 413
XbaI	TCTAGA	1 cut(s)	298
XspI	CTAG	3 cut(s)	201, 299, 399
ZraI	GACGTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.