Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

26003864 .. 26007241

Gene Structure 3378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGGAGAAGCAGTACTTACTATGATAAGCATCAGGGACTGAAGAAAGGAGTCTGGGATCCGAAAGAAGACCAGATTGTCAAAGACTACGTCAAAAAACACGGTGTCGGAAAATGGAGCAAATTATCTAGGGAAACAGGTTTAAAGAGATGTGGGAAGAGTGTGAGGCTCAGGTGGTTAAATTACCTGAGGCCTGATATCGTTAGAGGCAACATTACCGAAGATGAAGAAGAGCTCATCGTCAGGCTCCACAAACTCTTGGGCAACAGATGGTCATTGATAGCCGGAAGATTACCAGGGCGAACAGATAATGAAATTAAAAACTACTGGAATTCCTTCGTAAAGAGGAAGCTGCAACCAGAAAACCCCTTGGAAGTGCCTAGAAATGAGAAGATCAGGGAGGACTCGCCATCCTCCGCCGCGGTTGCCGCTGCCGCTGAGGACAGCCCACATTTGACAGAAAACAATGTTAATGAAGAGGAAGACGATCATAATCAGTATCATGATTTTGACGTTGGAGTTGGCGTTGCAGTTGAGTCTGATGCGATTAACGATAACGGTTCTGGTGATGATGAACATCTGAGGGATGACCTTTGGTGGAACAATTTCATGATGGATCTGAATGGTACCGAATGCAACGTATCGGAATTTCAAACTGACTTCACCGAGATTTGGGAATCTAAGGAGAACGTTATCCCCGTTGGAGACTGCAGCACCGATCATCATGACATCATGCCGACTAATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

250

Amino Acids

28.63

Weight (kDa)

5.04

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	1.3e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 78	1.6e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 112	1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 118	7.9e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
Acc65I	GGTACC	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	626
AccII	CGCG	1 cut(s)	422
AciI	CCGC	5 cut(s)	417, 420, 422, 429, 435
AclI	AACGTT	1 cut(s)	690
AclWI	GGATC	3 cut(s)	53, 66, 624
AcsI	RAATTY	2 cut(s)	331, 647
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	2 cut(s)	16, 628
AfiI	CCNNNNNNNGG	1 cut(s)	672
AgsI	TTSAA	1 cut(s)	653
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	2 cut(s)	235, 352
AluI	AGCT	2 cut(s)	235, 352
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	699
AlwI	GGATC	3 cut(s)	53, 66, 624
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	3 cut(s)	352, 431, 711
ApoI	RAATTY	2 cut(s)	331, 647
ArsI	GACNNNNNNTTYG	2 cut(s)	75, 107
Asp700I	GAANNNNTTC	2 cut(s)	335, 605
Asp718I	GGTACC	1 cut(s)	626
AsuHPI	GGTGA	2 cut(s)	578, 655
AxyI	CCTNAGG	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	75, 489
Bbv12I	GWGCWC	1 cut(s)	237
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	3 cut(s)	339, 418, 723
BccI	CCATC	3 cut(s)	264, 418, 607
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	699
BfaI	CTAG	2 cut(s)	129, 381
BfmI	CTRYAG	1 cut(s)	709
BisI	GCNGC	6 cut(s)	353, 420, 429, 432, 435, 712
BlsI	GCNGC	6 cut(s)	354, 421, 430, 433, 436, 713
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	297
BmiI	GGNNCC	3 cut(s)	60, 248, 628
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	2 cut(s)	40, 532
BpiI	GAAGAC	2 cut(s)	75, 489
Bpu10I	CCTNAGC	2 cut(s)	170, 438
BsaBI	GATNNNNATC	3 cut(s)	30, 492, 576
BsaJI	CCNNGG	3 cut(s)	296, 369, 420
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	672
Bse1I	ACTGG	1 cut(s)	332
Bse21I	CCTNAGG	1 cut(s)	188
Bse8I	GATNNNNATC	3 cut(s)	30, 492, 576
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	3 cut(s)	296, 369, 420
BseGI	GGATG	2 cut(s)	410, 592
BseJI	GATNNNNATC	3 cut(s)	30, 492, 576
BseLI	CCNNNNNNNGG	1 cut(s)	672
BseMII	CTCAG	4 cut(s)	179, 184, 429, 572
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	3 cut(s)	339, 418, 723
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	1 cut(s)	193
BshNI	GGYRCC	1 cut(s)	626
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	672
BsmAI	GTCTC	1 cut(s)	699
BsmFI	GGGAC	1 cut(s)	51
BsmI	GAATGC	1 cut(s)	638
BsnI	GGCC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	5 cut(s)	58, 393, 487, 616, 718
BspACI	CCGC	5 cut(s)	417, 420, 422, 429, 435
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	4 cut(s)	180, 183, 430, 573
BspFNI	CGCG	1 cut(s)	422
BspHI	TCATGA	3 cut(s)	502, 609, 724
BspLI	GGNNCC	3 cut(s)	60, 248, 628
BspMAI	CTGCAG	1 cut(s)	713
BspPI	GGATC	3 cut(s)	53, 66, 624
BspQI	GCTCTTC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	626
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	3 cut(s)	296, 369, 420
BssMI	GATC	5 cut(s)	58, 393, 487, 616, 718
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	104, 560
Bst6I	CTCTTC	3 cut(s)	152, 225, 471
BstDEI	CTNAG	5 cut(s)	170, 188, 438, 581, 681
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	410, 592
BstFNI	CGCG	1 cut(s)	422
BstKTI	GATC	5 cut(s)	61, 396, 490, 619, 721
BstMAI	GTCTC	1 cut(s)	699
BstMBI	GATC	5 cut(s)	58, 393, 487, 616, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 428, 434
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	709
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	3 cut(s)	339, 418, 723
BstV2I	GAAGAC	2 cut(s)	75, 489
BstX2I	RGATCY	2 cut(s)	58, 616
BstYI	RGATCY	2 cut(s)	58, 616
Bsu36I	CCTNAGG	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	193
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	410, 592
CaiI	CAGNNNCTG	1 cut(s)	40
CciI	TCATGA	3 cut(s)	502, 609, 724
Cfr42I	CCGCGG	1 cut(s)	423
Csp6I	GTAC	2 cut(s)	15, 627
CviAII	CATG	4 cut(s)	503, 610, 725, 733
CviJI	RGCY	7 cut(s)	169, 193, 235, 247, 284, 352, 447
CviKI_1	RGCY	7 cut(s)	169, 193, 235, 247, 284, 352, 447
CviQI	GTAC	2 cut(s)	15, 627
DdeI	CTNAG	5 cut(s)	170, 188, 438, 581, 681
DpnI	GATC	5 cut(s)	60, 395, 489, 618, 720
DpnII	GATC	5 cut(s)	58, 393, 487, 616, 718
DraI	TTTAAA	1 cut(s)	144
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	152, 225, 471
EarI	CTCTTC	3 cut(s)	152, 225, 471
EciI	GGCGGA	1 cut(s)	406
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	369
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	62
Eco81I	CCTNAGG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	235
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	4 cut(s)	506, 613, 728, 736
FaiI	YATR	6 cut(s)	24, 492, 504, 611, 726, 734
FalI	AAGNNNNNCTT	1 cut(s)	33
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	4 cut(s)	502, 609, 724, 732
Fnu4HI	GCNGC	6 cut(s)	353, 420, 429, 432, 435, 712
FokI	GGATG	2 cut(s)	397, 599
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	6 cut(s)	353, 420, 429, 432, 435, 712
FspBI	CTAG	2 cut(s)	129, 381
GluI	GCNGC	6 cut(s)	353, 420, 429, 432, 435, 712
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	4 cut(s)	506, 613, 728, 736
HinfI	GANTC	4 cut(s)	51, 404, 536, 677
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	578, 655
Hpy188I	TCNGA	6 cut(s)	63, 110, 541, 582, 621, 646
Hpy188III	TCNNGA	3 cut(s)	503, 610, 725
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	2 cut(s)	104, 560
HpyCH4IV	ACGT	4 cut(s)	90, 513, 639, 690
HpyCH4V	TGCA	4 cut(s)	355, 530, 636, 711
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 428, 434
HpyF3I	CTNAG	5 cut(s)	170, 188, 438, 581, 681
HpySE526I	ACGT	4 cut(s)	90, 513, 639, 690
Hsp92II	CATG	4 cut(s)	506, 613, 728, 736
KpnI	GGTACC	1 cut(s)	630
KspI	CCGCGG	1 cut(s)	423
Kzo9I	GATC	5 cut(s)	58, 393, 487, 616, 718
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	2 cut(s)	117, 252
Lsp1109I	GCAGC	3 cut(s)	339, 418, 723
LweI	GCATC	2 cut(s)	40, 532
MaeI	CTAG	2 cut(s)	129, 381
MaeII	ACGT	4 cut(s)	90, 513, 639, 690
MalI	GATC	5 cut(s)	60, 395, 489, 618, 720
MboI	GATC	5 cut(s)	58, 393, 487, 616, 718
MflI	RGATCY	2 cut(s)	58, 616
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	7 cut(s)	122, 181, 315, 331, 604, 647, 745
MlyI	GAGTC	3 cut(s)	60, 398, 545
MmeI	TCCRAC	3 cut(s)	88, 496, 682
MnlI	CCTC	9 cut(s)	159, 183, 200, 339, 394, 424, 433, 472, 576
MroXI	GAANNNNTTC	2 cut(s)	335, 605
MseI	TTAA	5 cut(s)	143, 179, 318, 471, 549
MspA1I	CMGCKG	3 cut(s)	422, 431, 437
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	638
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	3 cut(s)	425, 428, 434
NdeII	GATC	5 cut(s)	58, 393, 487, 616, 718
NlaIII	CATG	4 cut(s)	506, 613, 728, 736
NlaIV	GGNNCC	3 cut(s)	60, 248, 628
PagI	TCATGA	3 cut(s)	502, 609, 724
PceI	AGGCCT	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PctI	GAATGC	1 cut(s)	638
PdmI	GAANNNNTTC	2 cut(s)	335, 605
PfeI	GAWTC	1 cut(s)	677
PflFI	GACNNNGTC	1 cut(s)	89
PkrI	GCNGC	6 cut(s)	354, 421, 430, 433, 436, 713
PleI	GAGTC	3 cut(s)	59, 398, 544
PpsI	GAGTC	3 cut(s)	59, 398, 544
Psp124BI	GAGCTC	1 cut(s)	237
Psp1406I	AACGTT	1 cut(s)	690
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	3 cut(s)	60, 248, 628
PstI	CTGCAG	1 cut(s)	713
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	58, 616
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	2 cut(s)	16, 628
RsaNI	GTAC	2 cut(s)	15, 627
SacI	GAGCTC	1 cut(s)	237
SacII	CCGCGG	1 cut(s)	423
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	5 cut(s)	143, 179, 318, 471, 549
SatI	GCNGC	6 cut(s)	353, 420, 429, 432, 435, 712
Sau3AI	GATC	5 cut(s)	58, 393, 487, 616, 718
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	3 cut(s)	60, 398, 545
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	2 cut(s)	40, 532
SfcI	CTRYAG	1 cut(s)	709
Sfr303I	CCGCGG	1 cut(s)	423
SgrBI	CCGCGG	1 cut(s)	423
Sse9I	AATT	7 cut(s)	122, 181, 315, 331, 604, 647, 745
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	5 cut(s)	417, 420, 422, 429, 435
SspMI	CTAG	2 cut(s)	129, 381
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	104, 560
TaiI	ACGT	4 cut(s)	93, 516, 642, 693
TasI	AATT	7 cut(s)	122, 181, 315, 331, 604, 647, 745
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	3 cut(s)	422, 431, 437
TfiI	GAWTC	1 cut(s)	677
Tru1I	TTAA	5 cut(s)	143, 179, 318, 471, 549
Tru9I	TTAA	5 cut(s)	143, 179, 318, 471, 549
TseI	GCWGC	3 cut(s)	352, 431, 711
TspDTI	ATGAA	5 cut(s)	240, 327, 489, 588, 598
Tth111I	GACNNNGTC	1 cut(s)	89
XapI	RAATTY	2 cut(s)	331, 647
XmnI	GAANNNNTTC	2 cut(s)	335, 605
XspI	CTAG	2 cut(s)	129, 381
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.