Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

68700516 .. 68701702

Gene Structure 1187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28049

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAGAAGCAGTACTTACTATGATAAGAATGATGGACTGAAGAAAGGAGCCTGGGCTGCAAGTGAAGACCAGATTGTCAAAGCCTACGTCGAAAAACATGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTCAGGTGGTTGAACTATCTGAGGCCTGATATTATCAAAGGCAACATTACAGAAGAAGAAGAAGAGCTCATCATCAGGCTCCACAAACTCCTGGGAAACAGATGGTCATTGATAGCCGGAAGGATACCAGGGCGAACTGACAATGAAATAAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTACAACAAGAAAATCACTTAGAAGTGTCCAAAGATGAGGAGATCAAGGAGGACTTGTCATCCTCTGTCGTTGTTGCCGCTGCCACTGATGAGGACGTCTCACGTTTGACCAAAAACAATGTCATTGAAGACGAAGTTAATCATCGTCAGCATCATGATGCTGACGTTGGAGTTGGAGTTGCAGCTGAAGCAACTAACAATAAGGGTACTGGTGATGATGAATATCTGAGGGATGACCTTTGGCGGAACAATTTCATAATGGATTTCAATGATACCCAATTCGACGTATCTGAACTCCAAAACGACATCCCCGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

210

Amino Acids

24.18

Weight (kDa)

5.15

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	56 - 100	2.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	60 - 109	1.2e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AatII	GACGTC	1 cut(s)	411
AciI	CCGC	2 cut(s)	390, 556
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	3 cut(s)	59, 125, 519
AcyI	GRCGYC	1 cut(s)	408
AfaI	GTAC	2 cut(s)	13, 520
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	142, 440, 580
AjnI	CCWGG	3 cut(s)	50, 219, 256
AluBI	AGCT	3 cut(s)	196, 313, 497
AluI	AGCT	3 cut(s)	196, 313, 497
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	2 cut(s)	121, 415
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	3 cut(s)	56, 392, 494
ApoI	RAATTY	1 cut(s)	292
ArsI	GACNNNNNNTTYG	4 cut(s)	72, 104, 417, 449
Asp700I	GAANNNNTTC	1 cut(s)	563
AsuHPI	GGTGA	1 cut(s)	536
AvaI	CYCGRG	1 cut(s)	623
BanII	GRGCYC	1 cut(s)	198
BbsI	GAAGAC	2 cut(s)	72, 447
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	43, 379, 506
BccI	CCATC	2 cut(s)	26, 225
BciT130I	CCWGG	3 cut(s)	52, 221, 258
BciVI	GTATCC	1 cut(s)	246
BcoDI	GTCTC	2 cut(s)	121, 415
BfuI	GTATCC	1 cut(s)	246
BisI	GCNGC	4 cut(s)	57, 390, 393, 495
BlsI	GCNGC	4 cut(s)	58, 391, 394, 496
BmcAI	AGTACT	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	52, 221, 258
BmeT110I	CYCGRG	1 cut(s)	623
BmiI	GGNNCC	2 cut(s)	49, 209
BmrFI	CCNGG	3 cut(s)	52, 221, 258
BmsI	GCATC	2 cut(s)	460, 472
BpiI	GAAGAC	2 cut(s)	72, 447
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BsaBI	GATNNNNATC	1 cut(s)	534
BsaHI	GRCGYC	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	51, 220, 257
BsaXI	ACNNNNNCTCC	4 cut(s)	353, 383, 474, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	293, 526
Bse8I	GATNNNNATC	1 cut(s)	534
BseBI	CCWGG	3 cut(s)	52, 221, 258
BseDI	CCNNGG	3 cut(s)	51, 220, 257
BseGI	GGATG	3 cut(s)	371, 550, 618
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMII	CTCAG	3 cut(s)	140, 145, 530
BseNI	ACTGG	2 cut(s)	293, 526
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	3 cut(s)	43, 379, 506
BshFI	GGCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	2 cut(s)	121, 415
BsmBI	CGTCTC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	2 cut(s)	390, 556
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	3 cut(s)	141, 144, 531
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	49, 209
BspQI	GCTCTTC	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	293, 526
BssECI	CCNNGG	3 cut(s)	51, 220, 257
BssMI	GATC	1 cut(s)	354
BssNI	GRCGYC	1 cut(s)	408
Bst2UI	CCWGG	3 cut(s)	52, 221, 258
Bst6I	CTCTTC	3 cut(s)	101, 113, 186
BstACI	GRCGYC	1 cut(s)	408
BstDEI	CTNAG	4 cut(s)	131, 149, 331, 539
BstENI	CCTNNNNNAGG	1 cut(s)	304
BstF5I	GGATG	3 cut(s)	371, 550, 618
BstKTI	GATC	1 cut(s)	357
BstMAI	GTCTC	2 cut(s)	121, 415
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 500
BstNI	CCWGG	3 cut(s)	52, 221, 258
BstSCI	CCNGG	3 cut(s)	50, 219, 256
BstV1I	GCAGC	3 cut(s)	43, 379, 506
BstV2I	GAAGAC	2 cut(s)	72, 447
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	3 cut(s)	371, 550, 618
BtsIMutI	CAGTG	1 cut(s)	396
CciI	TCATGA	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	12, 519
CviAII	CATG	2 cut(s)	98, 467
CviJI	RGCY	9 cut(s)	50, 56, 83, 154, 196, 208, 245, 313, 497
CviKI_1	RGCY	9 cut(s)	50, 56, 83, 154, 196, 208, 245, 313, 497
CviQI	GTAC	2 cut(s)	12, 519
DdeI	CTNAG	4 cut(s)	131, 149, 331, 539
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	3 cut(s)	101, 113, 186
EarI	CTCTTC	3 cut(s)	101, 113, 186
EciI	GGCGGA	1 cut(s)	571
Ecl136II	GAGCTC	1 cut(s)	196
Eco147I	AGGCCT	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	3 cut(s)	59, 125, 519
Eco88I	CYCGRG	1 cut(s)	623
EcoICRI	GAGCTC	1 cut(s)	196
EcoNI	CCTNNNNNAGG	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	3 cut(s)	50, 219, 256
EcoT38I	GRGCYC	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	2 cut(s)	101, 470
FaiI	YATR	4 cut(s)	21, 99, 468, 569
FalI	AAGNNNNNCTT	3 cut(s)	30, 350, 382
FatI	CATG	2 cut(s)	97, 466
Fnu4HI	GCNGC	4 cut(s)	57, 390, 393, 495
FokI	GGATG	3 cut(s)	358, 557, 605
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	4 cut(s)	57, 390, 393, 495
GluI	GCNGC	4 cut(s)	57, 390, 393, 495
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	1 cut(s)	246
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	2 cut(s)	101, 470
HinfI	GANTC	1 cut(s)	129
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	536
Hpy188I	TCNGA	4 cut(s)	105, 150, 540, 604
Hpy188III	TCNNGA	1 cut(s)	467
Hpy99I	CGWCG	2 cut(s)	92, 599
HpyAV	CCTTC	1 cut(s)	243
HpyCH4IV	ACGT	5 cut(s)	87, 408, 415, 477, 597
HpyCH4V	TGCA	2 cut(s)	59, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 500
HpyF3I	CTNAG	4 cut(s)	131, 149, 331, 539
HpySE526I	ACGT	5 cut(s)	87, 408, 415, 477, 597
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	101, 470
Kzo9I	GATC	1 cut(s)	354
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	2 cut(s)	47, 213
Lsp1109I	GCAGC	3 cut(s)	43, 379, 506
LweI	GCATC	2 cut(s)	460, 472
MaeII	ACGT	5 cut(s)	87, 408, 415, 477, 597
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	9 cut(s)	52, 77, 118, 130, 194, 197, 200, 203, 452
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	3 cut(s)	292, 562, 590
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	2 cut(s)	460, 466
MnlI	CCTC	7 cut(s)	144, 300, 343, 355, 385, 397, 534
MroXI	GAANNNNTTC	1 cut(s)	563
MseI	TTAA	2 cut(s)	302, 450
MslI	CAYNNNNRTG	1 cut(s)	468
MspA1I	CMGCKG	2 cut(s)	392, 497
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	3 cut(s)	52, 221, 258
MvaI	CCWGG	3 cut(s)	52, 221, 258
MwoI	GCNNNNNNNGC	2 cut(s)	56, 500
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	2 cut(s)	101, 470
NlaIV	GGNNCC	2 cut(s)	49, 209
PagI	TCATGA	1 cut(s)	466
PceI	AGGCCT	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	563
PkrI	GCNGC	4 cut(s)	58, 391, 394, 496
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
Psp124BI	GAGCTC	1 cut(s)	198
Psp6I	CCWGG	3 cut(s)	50, 219, 256
PspGI	CCWGG	3 cut(s)	50, 219, 256
PspN4I	GGNNCC	2 cut(s)	49, 209
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	2 cut(s)	13, 520
RsaNI	GTAC	2 cut(s)	12, 519
RseI	CAYNNNNRTG	1 cut(s)	468
SacI	GAGCTC	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	302, 450
SatI	GCNGC	4 cut(s)	57, 390, 393, 495
Sau3AI	GATC	1 cut(s)	354
ScaI	AGTACT	1 cut(s)	13
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	3 cut(s)	52, 221, 258
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	2 cut(s)	460, 472
SmiMI	CAYNNNNRTG	1 cut(s)	468
Sse9I	AATT	3 cut(s)	292, 562, 590
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	2 cut(s)	390, 556
SstI	GAGCTC	1 cut(s)	198
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	3 cut(s)	50, 219, 256
TaiI	ACGT	5 cut(s)	90, 411, 418, 480, 600
TaqI	TCGA	2 cut(s)	90, 594
TasI	AATT	3 cut(s)	292, 562, 590
TatI	WGTACW	1 cut(s)	11
TauI	GCSGC	1 cut(s)	392
Tru1I	TTAA	2 cut(s)	302, 450
Tru9I	TTAA	2 cut(s)	302, 450
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	3 cut(s)	56, 392, 494
TspDTI	ATGAA	3 cut(s)	288, 546, 556
TspRI	CASTG	1 cut(s)	403
XagI	CCTNNNNNAGG	1 cut(s)	304
XapI	RAATTY	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	563
ZraI	GACGTC	1 cut(s)	409
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.