Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

35436305 .. 35437772

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG268400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGGAGAAGCAGTAGTACTTACTATGATAAGAATGATGGACTGAAGAAAGGAGCCTGGGCTGCAAGTGAAGACCAGATTGTCAAAGACTACGTCAAAAAACACGGCATCGGAAAATGGGGCAAACTAACTAGGGAAACAGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTTAGGTGGATGAACTATCTGAGGCCTGATATCATCAGAGGCTACATTAAAGAAGATGAAGAAGAGCTCATCATCAGGCTCCACAAACTCCTGGGAAACAGATGGTCATTGATAGCTGGAAGGATACCAGGGCGAACTGACAATGAAATCAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTGGAACAAGAAAATCACTTGGAAGTGTTTAAAGATGAGGAGATCAAGGAGGACTTGTCATCCTCTGCTGCGGCTGCAGATGATGAAAACCCACGTTTGACCAAAAACAATGTCGTTGAAGACGAAGATCATCATCGTCAGCATTACGATGTTGACGTTGGAGTTGGAGTTGGAGTGGAAGCAACTAATAATAACGGTATTGGTGATGATGAATATCTGAGGGATGACCTTTGGTGGAACAATTTCGTAGTGGATTTCAATGATACCCAACTCGACGTATCTGACTTCCAAACCGACTTCCCCGTGAATTGGGAATCTAAGGCGAACATTATCGACGGCGGAGATTGCTGCACCGATCAACAAGACATGCCAAATAATATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

246

Amino Acids

28.44

Weight (kDa)

5.03

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 64	7.9e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	72 - 114	2.5e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	75 - 132	2.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AciI	CCGC	2 cut(s)	425, 693
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	65, 167
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	2 cut(s)	348, 663
AgsI	TTSAA	2 cut(s)	473, 613
AjnI	CCWGG	3 cut(s)	56, 261, 298
AluBI	AGCT	3 cut(s)	238, 287, 355
AluI	AGCT	3 cut(s)	238, 287, 355
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	163
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	4 cut(s)	62, 422, 428, 702
ApoI	RAATTY	1 cut(s)	334
ArsI	GACNNNNNNTTYG	4 cut(s)	78, 110, 450, 482
Asp700I	GAANNNNTTC	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	240
BarI	GAAGNNNNNNTAC	1 cut(s)	33
BbsI	GAAGAC	2 cut(s)	78, 480
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	4 cut(s)	49, 409, 415, 689
BccI	CCATC	2 cut(s)	32, 267
BceAI	ACGGC	2 cut(s)	121, 706
BciT130I	CCWGG	3 cut(s)	58, 263, 300
BciVI	GTATCC	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	288
BisI	GCNGC	5 cut(s)	63, 423, 426, 429, 703
BlsI	GCNGC	5 cut(s)	64, 424, 427, 430, 704
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	3 cut(s)	58, 263, 300
BmiI	GGNNCC	2 cut(s)	55, 251
BmrFI	CCNGG	3 cut(s)	58, 263, 300
BmsI	GCATC	1 cut(s)	117
BpiI	GAAGAC	2 cut(s)	78, 480
BsaBI	GATNNNNATC	2 cut(s)	486, 567
BsaJI	CCNNGG	3 cut(s)	57, 262, 299
BsaXI	ACNNNNNCTCC	7 cut(s)	28, 395, 425, 507, 513, 537, 543
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 663
Bse1I	ACTGG	1 cut(s)	335
Bse8I	GATNNNNATC	2 cut(s)	486, 567
BseBI	CCWGG	3 cut(s)	58, 263, 300
BseDI	CCNNGG	3 cut(s)	57, 262, 299
BseGI	GGATG	3 cut(s)	186, 413, 583
BseJI	GATNNNNATC	2 cut(s)	486, 567
BseLI	CCNNNNNNNGG	2 cut(s)	348, 663
BseMII	CTCAG	2 cut(s)	182, 563
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	2 cut(s)	19, 407
BseXI	GCAGC	4 cut(s)	49, 409, 415, 689
BsgI	GTGCAG	1 cut(s)	688
BshFI	GGCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	348, 663
BsmAI	GTCTC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	3 cut(s)	396, 481, 709
BspACI	CCGC	2 cut(s)	425, 693
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	183, 564
BspLI	GGNNCC	2 cut(s)	55, 251
BspMAI	CTGCAG	1 cut(s)	433
BspQI	GCTCTTC	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	57, 262, 299
BssMI	GATC	3 cut(s)	396, 481, 709
Bst2UI	CCWGG	3 cut(s)	58, 263, 300
Bst4CI	ACNGT	1 cut(s)	551
Bst6I	CTCTTC	3 cut(s)	143, 155, 228
BstDEI	CTNAG	4 cut(s)	173, 191, 572, 672
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstF5I	GGATG	3 cut(s)	186, 413, 583
BstKTI	GATC	3 cut(s)	399, 484, 712
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	3 cut(s)	396, 481, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 428, 699
BstNI	CCWGG	3 cut(s)	58, 263, 300
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	3 cut(s)	56, 261, 298
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	4 cut(s)	49, 409, 415, 689
BstV2I	GAAGAC	2 cut(s)	78, 480
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	3 cut(s)	186, 413, 583
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	1 cut(s)	721
CviJI	RGCY	9 cut(s)	56, 62, 196, 213, 238, 250, 287, 355, 428
CviKI_1	RGCY	9 cut(s)	56, 62, 196, 213, 238, 250, 287, 355, 428
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	4 cut(s)	173, 191, 572, 672
DpnI	GATC	3 cut(s)	398, 483, 711
DpnII	GATC	3 cut(s)	396, 481, 709
DraI	TTTAAA	1 cut(s)	385
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	3 cut(s)	143, 155, 228
EarI	CTCTTC	3 cut(s)	143, 155, 228
EciI	GGCGGA	1 cut(s)	708
Ecl136II	GAGCTC	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	2 cut(s)	65, 167
EcoICRI	GAGCTC	1 cut(s)	238
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	3 cut(s)	56, 261, 298
EcoRV	GATATC	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	240
FaeI	CATG	1 cut(s)	724
FaiI	YATR	2 cut(s)	27, 722
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FatI	CATG	1 cut(s)	720
Fnu4HI	GCNGC	5 cut(s)	63, 423, 426, 429, 703
FokI	GGATG	3 cut(s)	193, 400, 590
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	5 cut(s)	63, 423, 426, 429, 703
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	5 cut(s)	63, 423, 426, 429, 703
HaeIII	GGCC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	724
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	1 cut(s)	668
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	6 cut(s)	113, 147, 192, 209, 573, 637
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	2 cut(s)	632, 692
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4IV	ACGT	4 cut(s)	93, 448, 510, 630
HpyCH4V	TGCA	3 cut(s)	65, 431, 705
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 428, 699
HpyF3I	CTNAG	4 cut(s)	173, 191, 572, 672
HpySE526I	ACGT	4 cut(s)	93, 448, 510, 630
Hsp92II	CATG	1 cut(s)	724
Kzo9I	GATC	3 cut(s)	396, 481, 709
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	53, 255
Lsp1109I	GCAGC	4 cut(s)	49, 409, 415, 689
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	4 cut(s)	93, 448, 510, 630
MalI	GATC	3 cut(s)	398, 483, 711
MboI	GATC	3 cut(s)	396, 481, 709
MboII	GAAGA	9 cut(s)	58, 83, 160, 172, 236, 242, 245, 485, 491
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	3 cut(s)	334, 595, 661
MmeI	TCCRAC	3 cut(s)	493, 499, 505
MnlI	CCTC	7 cut(s)	186, 203, 342, 385, 397, 427, 567
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	3 cut(s)	219, 344, 384
MslI	CAYNNNNRTG	1 cut(s)	501
MspR9I	CCNGG	3 cut(s)	58, 263, 300
MvaI	CCWGG	3 cut(s)	58, 263, 300
MwoI	GCNNNNNNNGC	3 cut(s)	62, 428, 699
NdeII	GATC	3 cut(s)	396, 481, 709
NlaIII	CATG	1 cut(s)	724
NlaIV	GGNNCC	2 cut(s)	55, 251
NspI	RCATGY	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	2 cut(s)	474, 507
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	668
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	64, 424, 427, 430, 704
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	3 cut(s)	56, 261, 298
PspGI	CCWGG	3 cut(s)	56, 261, 298
PspN4I	GGNNCC	2 cut(s)	55, 251
PstI	CTGCAG	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	501
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	219, 344, 384
SatI	GCNGC	5 cut(s)	63, 423, 426, 429, 703
Sau3AI	GATC	3 cut(s)	396, 481, 709
ScaI	AGTACT	1 cut(s)	19
ScrFI	CCNGG	3 cut(s)	58, 263, 300
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	117
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	3 cut(s)	334, 595, 661
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	2 cut(s)	425, 693
SspI	AATATT	1 cut(s)	733
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	240
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	3 cut(s)	56, 261, 298
TaaI	ACNGT	1 cut(s)	551
TaiI	ACGT	4 cut(s)	96, 451, 513, 633
TaqI	TCGA	2 cut(s)	627, 687
TasI	AATT	3 cut(s)	334, 595, 661
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	3 cut(s)	219, 344, 384
Tru9I	TTAA	3 cut(s)	219, 344, 384
TseI	GCWGC	4 cut(s)	62, 422, 428, 702
TspDTI	ATGAA	5 cut(s)	197, 243, 330, 453, 579
Tth111I	GACNNNGTC	1 cut(s)	92
XagI	CCTNNNNNAGG	1 cut(s)	346
XapI	RAATTY	1 cut(s)	334
XceI	RCATGY	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.