Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

67323134 .. 67324274

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGATGGACCGAAGAAAGGAGCCTGGGCTGCGAGTGAAGACCAGATTGTCAAAGCCTACGTCAAAAAACACGGTGTCGGAAAATGGGGCAAACTATCCAGGGAAACAGGCAATTCAAAGATGTGGGAAGAGTGTGAGACTCAGGTGGTTGAACTATCTGAGGCCTGATATTATCAAAGGCAACATTACAGAAGACGAAGAAGAGCTCATCATCAGGGAAACAAACTCCTGGGAAACAGCCGGAAGGATACCAGGGCGAACTGACAATGAAATCAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTACAACAAGAAAATCACTTAGAAGTGTCCAAAGATGAGGAGATCAAGGAGGACTTGTCATCCTCTGTCGTTGTTGCCGCTGCCACTGATGAGGACGTCCCACGTTTGACCAAAAACAATGTCATTGAAGACGAAGATCATCATCGTCAGCATCATGATGCTGACGTTGGAGTTGGAGTTGCAGCTGAAGCAACTAACAATAAGGGTACTGGTGATGATGAATATCTGAGGGATGACCTTTGGTGGAACAATTTCATAATGGATTTCAATGATACCCAATTCGACGTATCTGAATTCCAAAACGACATCCCCGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

208

Amino Acids

24.0

Weight (kDa)

4.94

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AatII	GACGTC	1 cut(s)	405
AciI	CCGC	1 cut(s)	384
AcsI	RAATTY	2 cut(s)	286, 599
AcuI	CTGAAG	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	2 cut(s)	16, 300
AgsI	TTSAA	4 cut(s)	116, 151, 434, 574
AjnI	CCWGG	4 cut(s)	22, 97, 227, 250
AluBI	AGCT	3 cut(s)	205, 307, 491
AluI	AGCT	3 cut(s)	205, 307, 491
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	130
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	3 cut(s)	28, 386, 488
ApoI	RAATTY	2 cut(s)	286, 599
ArsI	GACNNNNNNTTYG	4 cut(s)	44, 76, 411, 443
Asp700I	GAANNNNTTC	1 cut(s)	557
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	530
AvaI	CYCGRG	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	3 cut(s)	44, 198, 441
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	15, 373, 500
BciT130I	CCWGG	4 cut(s)	24, 99, 229, 252
BciVI	GTATCC	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	130
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	4 cut(s)	29, 384, 387, 489
BlsI	GCNGC	4 cut(s)	30, 385, 388, 490
Bme1390I	CCNGG	4 cut(s)	24, 99, 229, 252
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	4 cut(s)	24, 99, 229, 252
BmsI	GCATC	2 cut(s)	454, 466
BpiI	GAAGAC	3 cut(s)	44, 198, 441
BsaBI	GATNNNNATC	2 cut(s)	447, 528
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	4 cut(s)	23, 98, 228, 251
BsaXI	ACNNNNNCTCC	4 cut(s)	347, 377, 468, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 300
Bse1I	ACTGG	2 cut(s)	287, 520
Bse8I	GATNNNNATC	2 cut(s)	447, 528
BseBI	CCWGG	4 cut(s)	24, 99, 229, 252
BseDI	CCNNGG	4 cut(s)	23, 98, 228, 251
BseGI	GGATG	3 cut(s)	365, 544, 612
BseJI	GATNNNNATC	2 cut(s)	447, 528
BseLI	CCNNNNNNNGG	2 cut(s)	16, 300
BseMII	CTCAG	3 cut(s)	149, 154, 524
BseNI	ACTGG	2 cut(s)	287, 520
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	3 cut(s)	15, 373, 500
BshFI	GGCC	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	16, 300
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	163
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	348, 442
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	3 cut(s)	150, 153, 525
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	287, 520
BssECI	CCNNGG	4 cut(s)	23, 98, 228, 251
BssMI	GATC	2 cut(s)	348, 442
BssNI	GRCGYC	1 cut(s)	402
Bst2UI	CCWGG	4 cut(s)	24, 99, 229, 252
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	122, 195
BstACI	GRCGYC	1 cut(s)	402
BstDEI	CTNAG	4 cut(s)	140, 158, 325, 533
BstENI	CCTNNNNNAGG	1 cut(s)	298
BstF5I	GGATG	3 cut(s)	365, 544, 612
BstKTI	GATC	2 cut(s)	351, 445
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	2 cut(s)	348, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 494
BstNI	CCWGG	4 cut(s)	24, 99, 229, 252
BstSCI	CCNGG	4 cut(s)	22, 97, 227, 250
BstV1I	GCAGC	3 cut(s)	15, 373, 500
BstV2I	GAAGAC	3 cut(s)	44, 198, 441
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	365, 544, 612
BtsIMutI	CAGTG	1 cut(s)	390
CciI	TCATGA	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	1 cut(s)	461
CviJI	RGCY	8 cut(s)	22, 28, 55, 163, 205, 239, 307, 491
CviKI_1	RGCY	8 cut(s)	22, 28, 55, 163, 205, 239, 307, 491
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	4 cut(s)	140, 158, 325, 533
DpnI	GATC	2 cut(s)	350, 444
DpnII	GATC	2 cut(s)	348, 442
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	122, 195
EarI	CTCTTC	2 cut(s)	122, 195
Ecl136II	GAGCTC	1 cut(s)	205
Eco147I	AGGCCT	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	513
Eco88I	CYCGRG	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	205
EcoNI	CCTNNNNNAGG	1 cut(s)	298
EcoRI	GAATTC	2 cut(s)	286, 599
EcoRII	CCWGG	4 cut(s)	22, 97, 227, 250
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	1 cut(s)	464
FaiI	YATR	2 cut(s)	462, 563
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	1 cut(s)	460
Fnu4HI	GCNGC	4 cut(s)	29, 384, 387, 489
FokI	GGATG	3 cut(s)	352, 551, 599
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	4 cut(s)	29, 384, 387, 489
GluI	GCNGC	4 cut(s)	29, 384, 387, 489
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	1 cut(s)	240
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	1 cut(s)	464
HinfI	GANTC	1 cut(s)	138
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	530
Hpy188I	TCNGA	4 cut(s)	79, 159, 534, 598
Hpy188III	TCNNGA	1 cut(s)	461
Hpy99I	CGWCG	1 cut(s)	593
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	5 cut(s)	59, 402, 409, 471, 591
HpyCH4V	TGCA	1 cut(s)	488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 494
HpyF3I	CTNAG	4 cut(s)	140, 158, 325, 533
HpySE526I	ACGT	5 cut(s)	59, 402, 409, 471, 591
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	1 cut(s)	464
Kzo9I	GATC	2 cut(s)	348, 442
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	3 cut(s)	15, 373, 500
LweI	GCATC	2 cut(s)	454, 466
MaeII	ACGT	5 cut(s)	59, 402, 409, 471, 591
MalI	GATC	2 cut(s)	350, 444
MboI	GATC	2 cut(s)	348, 442
MboII	GAAGA	8 cut(s)	24, 49, 139, 203, 209, 212, 446, 452
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	5 cut(s)	111, 286, 556, 584, 599
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	3 cut(s)	57, 454, 460
MnlI	CCTC	7 cut(s)	153, 294, 337, 349, 379, 391, 528
MroXI	GAANNNNTTC	1 cut(s)	557
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	2 cut(s)	386, 491
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	4 cut(s)	24, 99, 229, 252
MvaI	CCWGG	4 cut(s)	24, 99, 229, 252
MwoI	GCNNNNNNNGC	2 cut(s)	28, 494
NdeII	GATC	2 cut(s)	348, 442
NlaIII	CATG	1 cut(s)	464
NlaIV	GGNNCC	1 cut(s)	21
PagI	TCATGA	1 cut(s)	460
PceI	AGGCCT	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	615
PdmI	GAANNNNTTC	1 cut(s)	557
PkrI	GCNGC	4 cut(s)	30, 385, 388, 490
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	4 cut(s)	22, 97, 227, 250
PspGI	CCWGG	4 cut(s)	22, 97, 227, 250
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
RseI	CAYNNNNRTG	1 cut(s)	462
SacI	GAGCTC	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	4 cut(s)	29, 384, 387, 489
Sau3AI	GATC	2 cut(s)	348, 442
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	4 cut(s)	24, 99, 229, 252
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	2 cut(s)	454, 466
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	462
Sse9I	AATT	5 cut(s)	111, 286, 556, 584, 599
SseBI	AGGCCT	1 cut(s)	163
SsiI	CCGC	1 cut(s)	384
SstI	GAGCTC	1 cut(s)	207
StuI	AGGCCT	1 cut(s)	163
StyD4I	CCNGG	4 cut(s)	22, 97, 227, 250
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	5 cut(s)	62, 405, 412, 474, 594
TaqI	TCGA	1 cut(s)	588
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	5 cut(s)	111, 286, 556, 584, 599
TauI	GCSGC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	397
TseI	GCWGC	3 cut(s)	28, 386, 488
TspDTI	ATGAA	3 cut(s)	282, 540, 550
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	7
XagI	CCTNNNNNAGG	1 cut(s)	298
XapI	RAATTY	2 cut(s)	286, 599
XmnI	GAANNNNTTC	1 cut(s)	557
ZraI	GACGTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.