Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

68687818 .. 68689585

Gene Structure 1768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28048

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGGCGAAGCAGTACTTACTATGATAAGAATGATGGACTGAAGAAAGGAGCCTGGGCAGCAAGTGAAGACCAGATTGTCAAAGCCTACGTCAAAAAACACGGTGTCGGAAAATGGGGCAAACTATCCAGGGAAACAGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTCAGGTGGTTGAACTATCTGAGGCCTGATATCATCAAAGGCAACATTACAGAAGATGAAGAAGAGCTCATCATCAGGCTCCACAAACTCCTGGGAAACAGATGGTCATTGATAGCCGGAAGGTTACCAGGGCGAACTGACAATGAAATAAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTAGAAGAAGAAAATCACTTAGAAGTGTCAAAAGATGAGGAGATCAAGGAGGGCTTCACATCCTCTGCCGCTGATGAGGACGACCCACATTTGACCAAAGACAATGTCATTGAAGACGAAGATCATCATCGTCAGCCTCACGATGTTGACGTTGGAGTTGGAGTTGGAGCAACCAATAATAACGGTACTGGTGATGATGAATATCTGAGGGATGACCTTTGGTGGAACAATTTCATAATGGATTTCAATGCTACCCAACTCGACATATCTGAATTCCAAACCGACTTCCCCGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

216

Amino Acids

24.87

Weight (kDa)

5.15

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	4.2e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 78	2.6e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 113	5.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 122	7.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AciI	CCGC	1 cut(s)	420
AcsI	RAATTY	2 cut(s)	331, 623
AcuI	CTGAAG	2 cut(s)	62, 164
AfaI	GTAC	2 cut(s)	16, 538
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	181, 464, 598
AjnI	CCWGG	4 cut(s)	53, 128, 258, 295
AluBI	AGCT	2 cut(s)	235, 352
AluI	AGCT	2 cut(s)	235, 352
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	641
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	2 cut(s)	331, 623
ArsI	GACNNNNNNTTYG	4 cut(s)	75, 107, 441, 473
Asp700I	GAANNNNTTC	1 cut(s)	581
AsuHPI	GGTGA	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	641
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	75, 471
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	29, 264
BciT130I	CCWGG	4 cut(s)	55, 130, 260, 297
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	353
BisI	GCNGC	2 cut(s)	60, 420
BlsI	GCNGC	2 cut(s)	61, 421
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	4 cut(s)	55, 130, 260, 297
BmeT110I	CYCGRG	1 cut(s)	641
BmiI	GGNNCC	2 cut(s)	52, 248
BmrFI	CCNGG	4 cut(s)	55, 130, 260, 297
BpiI	GAAGAC	2 cut(s)	75, 471
BsaBI	GATNNNNATC	2 cut(s)	477, 552
BsaJI	CCNNGG	4 cut(s)	54, 129, 259, 296
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	332, 544
Bse8I	GATNNNNATC	2 cut(s)	477, 552
BseBI	CCWGG	4 cut(s)	55, 130, 260, 297
BseDI	CCNNGG	4 cut(s)	54, 129, 259, 296
BseGI	GGATG	2 cut(s)	410, 568
BseJI	GATNNNNATC	2 cut(s)	477, 552
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	3 cut(s)	179, 184, 548
BseNI	ACTGG	2 cut(s)	332, 544
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	641
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	393, 472
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	3 cut(s)	180, 183, 549
BspLI	GGNNCC	2 cut(s)	52, 248
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	332, 544
BssECI	CCNNGG	4 cut(s)	54, 129, 259, 296
BssMI	GATC	2 cut(s)	393, 472
Bst2UI	CCWGG	4 cut(s)	55, 130, 260, 297
Bst4CI	ACNGT	2 cut(s)	104, 536
Bst6I	CTCTTC	3 cut(s)	140, 152, 225
BstDEI	CTNAG	4 cut(s)	170, 188, 370, 557
BstEII	GGTNACC	1 cut(s)	291
BstENI	CCTNNNNNAGG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	410, 568
BstKTI	GATC	2 cut(s)	396, 475
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	393, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	4 cut(s)	55, 130, 260, 297
BstPI	GGTNACC	1 cut(s)	291
BstSCI	CCNGG	4 cut(s)	53, 128, 258, 295
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	2 cut(s)	75, 471
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	410, 568
Csp6I	GTAC	2 cut(s)	15, 537
CviJI	RGCY	9 cut(s)	53, 86, 193, 235, 247, 284, 352, 405, 487
CviKI_1	RGCY	9 cut(s)	53, 86, 193, 235, 247, 284, 352, 405, 487
CviQI	GTAC	2 cut(s)	15, 537
DdeI	CTNAG	4 cut(s)	170, 188, 370, 557
DpnI	GATC	2 cut(s)	395, 474
DpnII	GATC	2 cut(s)	393, 472
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	140, 152, 225
EarI	CTCTTC	3 cut(s)	140, 152, 225
Ecl136II	GAGCTC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	62, 164
Eco88I	CYCGRG	1 cut(s)	641
Eco91I	GGTNACC	1 cut(s)	291
EcoICRI	GAGCTC	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	343
EcoO65I	GGTNACC	1 cut(s)	291
EcoRI	GAATTC	2 cut(s)	331, 623
EcoRII	CCWGG	4 cut(s)	53, 128, 258, 295
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	237
FaiI	YATR	3 cut(s)	24, 587, 617
FalI	AAGNNNNNCTT	3 cut(s)	33, 389, 421
Fnu4HI	GCNGC	2 cut(s)	60, 420
FokI	GGATG	2 cut(s)	397, 575
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	60, 420
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	2 cut(s)	60, 420
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	5 cut(s)	110, 144, 189, 558, 622
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	1 cut(s)	499
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	2 cut(s)	104, 536
HpyCH4IV	ACGT	2 cut(s)	90, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	4 cut(s)	170, 188, 370, 557
HpySE526I	ACGT	2 cut(s)	90, 501
Kzo9I	GATC	2 cut(s)	393, 472
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	3 cut(s)	50, 252, 518
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	2 cut(s)	90, 501
MaeIII	GTNAC	1 cut(s)	291
MalI	GATC	2 cut(s)	395, 474
MboI	GATC	2 cut(s)	393, 472
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	331, 580, 623
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	4 cut(s)	88, 484, 490, 496
MnlI	CCTC	8 cut(s)	183, 339, 382, 394, 421, 424, 498, 552
MroXI	GAANNNNTTC	1 cut(s)	581
MseI	TTAA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	4 cut(s)	55, 130, 260, 297
MvaI	CCWGG	4 cut(s)	55, 130, 260, 297
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	2 cut(s)	393, 472
NlaIV	GGNNCC	2 cut(s)	52, 248
PceI	AGGCCT	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	581
PflFI	GACNNNGTC	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	61, 421
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	4 cut(s)	53, 128, 258, 295
PspEI	GGTNACC	1 cut(s)	291
PspGI	CCWGG	4 cut(s)	53, 128, 258, 295
PspN4I	GGNNCC	2 cut(s)	52, 248
PsyI	GACNNNGTC	1 cut(s)	455
RsaI	GTAC	2 cut(s)	16, 538
RsaNI	GTAC	2 cut(s)	15, 537
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	2 cut(s)	60, 420
Sau3AI	GATC	2 cut(s)	393, 472
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	4 cut(s)	55, 130, 260, 297
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	9 cut(s)	93, 142, 176, 237, 293, 341, 354, 504, 570
Sse9I	AATT	3 cut(s)	331, 580, 623
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	1 cut(s)	353
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	4 cut(s)	53, 128, 258, 295
TaaI	ACNGT	2 cut(s)	104, 536
TaiI	ACGT	2 cut(s)	93, 504
TaqI	TCGA	1 cut(s)	612
TasI	AATT	3 cut(s)	331, 580, 623
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	4 cut(s)	240, 327, 564, 574
Tth111I	GACNNNGTC	1 cut(s)	455
XagI	CCTNNNNNAGG	1 cut(s)	343
XapI	RAATTY	2 cut(s)	331, 623
XmnI	GAANNNNTTC	1 cut(s)	581
XspI	CTAG	1 cut(s)	353
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.