Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

59239415 .. 59240827

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGGGAAAGCAGTACTTGCTATGATAAGAACGAGGGACTGAAGAAAGGAGCCTGGGCTGCAGGTGAAGACCAGATTGTCAAGGACTACGTCAAAAAACATGGTCTGAAGAGATGTGGGAAGAGTGTGAGGCTTAGGTGGATGAATTATCTGAGGCCTGGTATCGTTAGAGGCAATATTACAGAAGATGAAGAAGAGCTCATCATCAGACTCCACAAACTCTTGGGCAACAGATGGTCACTGATAGCCGGAAGGATACCAGGGCGAACTGATAATGAAATCAAAAACTACTGGAATTCCTGCTTAAAGAGGAAGCTACAACAACAAAACCACTTGGCAGTGCCTAGAAATGTGGAGATCAGGGAGGACTTGTCATCCTCTGCTGCGGTTGCCGCTCCCGCTGAGAAGAACCCACATTTGACGGGAAACAATGTCAATGAAGACGAAGATTATCATCAGCATCATGATGCTGACTTTGGATTTGGAATTGAGTTTGAAGCAACTGATAATAATAACGGCACTGGTGATGATGAACATCTGAGGGATGACCTTTGGTGGAACAACTTCATAATGGATCTGAATGATATCCAACTCGATGCGTCTGAATTTCAACCCGACTTCCCCGAGATTAGGGAATCTACGGTGAACGTTATCGACGTTGGAGATTACAGCACCGATCATCATGCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

231

Amino Acids

26.33

Weight (kDa)

5.11

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	57 - 102	6.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	61 - 110	3.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	53
AasI	GACNNNNNNGTC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	53
AccBSI	CCGCTC	1 cut(s)	395
AciI	CCGC	3 cut(s)	386, 393, 399
AclI	AACGTT	1 cut(s)	648
AclWI	GGATC	1 cut(s)	582
AcsI	RAATTY	2 cut(s)	295, 605
AcuI	CTGAAG	2 cut(s)	62, 128
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	630
AgsI	TTSAA	2 cut(s)	497, 611
AjnI	CCWGG	3 cut(s)	53, 157, 259
AluBI	AGCT	2 cut(s)	199, 316
AluI	AGCT	2 cut(s)	199, 316
Alw21I	GWGCWC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	582
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	59, 383
ApoI	RAATTY	2 cut(s)	295, 605
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
Asp700I	GAANNNNTTC	1 cut(s)	563
AsuHPI	GGTGA	3 cut(s)	77, 536, 655
AvaI	CYCGRG	1 cut(s)	623
BanII	GRGCYC	1 cut(s)	201
BbsI	GAAGAC	2 cut(s)	75, 447
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	46, 370
BccI	CCATC	1 cut(s)	228
BceAI	ACGGC	1 cut(s)	532
BcgI	CGANNNNNNTGC	1 cut(s)	665
BciT130I	CCWGG	3 cut(s)	55, 159, 261
BciVI	GTATCC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	53
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	3 cut(s)	60, 384, 393
BlsI	GCNGC	3 cut(s)	61, 385, 394
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	3 cut(s)	55, 159, 261
BmeT110I	CYCGRG	1 cut(s)	623
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	3 cut(s)	55, 159, 261
BmsI	GCATC	3 cut(s)	457, 469, 586
BpiI	GAAGAC	2 cut(s)	75, 447
Bpu10I	CCTNAGC	1 cut(s)	134
BsaBI	GATNNNNATC	2 cut(s)	453, 534
BsaJI	CCNNGG	2 cut(s)	54, 260
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	630
Bse1I	ACTGG	2 cut(s)	296, 526
Bse8I	GATNNNNATC	2 cut(s)	453, 534
BseBI	CCWGG	3 cut(s)	55, 159, 261
BseDI	CCNNGG	2 cut(s)	54, 260
BseGI	GGATG	3 cut(s)	147, 374, 550
BseJI	GATNNNNATC	2 cut(s)	453, 534
BseLI	CCNNNNNNNGG	1 cut(s)	630
BseMII	CTCAG	3 cut(s)	143, 393, 530
BseNI	ACTGG	2 cut(s)	296, 526
BseXI	GCAGC	2 cut(s)	46, 370
BshFI	GGCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	630
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	357, 574, 676
BspACI	CCGC	3 cut(s)	386, 393, 399
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	3 cut(s)	144, 394, 531
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	582
BspQI	GCTCTTC	1 cut(s)	189
BsrBI	CCGCTC	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	296, 526
BssECI	CCNNGG	2 cut(s)	54, 260
BssMI	GATC	3 cut(s)	357, 574, 676
Bst2UI	CCWGG	3 cut(s)	55, 159, 261
Bst4CI	ACNGT	1 cut(s)	643
Bst6I	CTCTTC	3 cut(s)	104, 116, 189
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstDEI	CTNAG	4 cut(s)	134, 152, 402, 539
BstF5I	GGATG	3 cut(s)	147, 374, 550
BstKTI	GATC	3 cut(s)	360, 577, 679
BstMBI	GATC	3 cut(s)	357, 574, 676
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 59, 389, 392, 398
BstNI	CCWGG	3 cut(s)	55, 159, 261
BstSCI	CCNGG	3 cut(s)	53, 157, 259
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	46, 370
BstV2I	GAAGAC	2 cut(s)	75, 447
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	147, 374, 550
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	239, 345, 519
BveI	ACCTGC	1 cut(s)	53
CciI	TCATGA	1 cut(s)	463
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	3 cut(s)	101, 464, 683
CviJI	RGCY	7 cut(s)	53, 59, 133, 157, 199, 248, 316
CviKI_1	RGCY	7 cut(s)	53, 59, 133, 157, 199, 248, 316
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	4 cut(s)	134, 152, 402, 539
DpnI	GATC	3 cut(s)	359, 576, 678
DpnII	GATC	3 cut(s)	357, 574, 676
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	104, 116, 189
EarI	CTCTTC	3 cut(s)	104, 116, 189
Ecl136II	GAGCTC	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	62, 128
Eco88I	CYCGRG	1 cut(s)	623
EcoICRI	GAGCTC	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	295
EcoRII	CCWGG	3 cut(s)	53, 157, 259
EcoRV	GATATC	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	201
FaeI	CATG	3 cut(s)	104, 467, 686
FaiI	YATR	5 cut(s)	24, 102, 465, 569, 684
FalI	AAGNNNNNCTT	1 cut(s)	33
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	3 cut(s)	100, 463, 682
FauI	CCCGC	1 cut(s)	406
Fnu4HI	GCNGC	3 cut(s)	60, 384, 393
FokI	GGATG	3 cut(s)	154, 361, 557
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	3 cut(s)	60, 384, 393
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	3 cut(s)	60, 384, 393
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	588
Hin1II	CATG	3 cut(s)	104, 467, 686
HinfI	GANTC	2 cut(s)	210, 635
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	3 cut(s)	77, 536, 655
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	6 cut(s)	108, 153, 209, 540, 579, 604
Hpy188III	TCNNGA	1 cut(s)	464
Hpy8I	GTNNAC	1 cut(s)	646
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4IV	ACGT	3 cut(s)	90, 648, 657
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 59, 389, 392, 398
HpyF3I	CTNAG	4 cut(s)	134, 152, 402, 539
HpySE526I	ACGT	3 cut(s)	90, 648, 657
Hsp92II	CATG	3 cut(s)	104, 467, 686
Kzo9I	GATC	3 cut(s)	357, 574, 676
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	2 cut(s)	50, 400
Lsp1109I	GCAGC	2 cut(s)	46, 370
LweI	GCATC	3 cut(s)	457, 469, 586
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	3 cut(s)	90, 648, 657
MaeIII	GTNAC	1 cut(s)	237
MalI	GATC	3 cut(s)	359, 576, 678
MbiI	CCGCTC	1 cut(s)	395
MboI	GATC	3 cut(s)	357, 574, 676
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	4 cut(s)	145, 295, 486, 605
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	2 cut(s)	613, 640
MnlI	CCTC	8 cut(s)	28, 123, 147, 164, 303, 358, 388, 534
MroXI	GAANNNNTTC	1 cut(s)	563
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	465
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	3 cut(s)	55, 159, 261
MvaI	CCWGG	3 cut(s)	55, 159, 261
MwoI	GCNNNNNNNGC	5 cut(s)	18, 59, 389, 392, 398
NdeII	GATC	3 cut(s)	357, 574, 676
NlaIII	CATG	3 cut(s)	104, 467, 686
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	237
PagI	TCATGA	1 cut(s)	463
PaqCI	CACCTGC	1 cut(s)	53
PceI	AGGCCT	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	563
PfeI	GAWTC	1 cut(s)	635
PflFI	GACNNNGTC	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	61, 385, 394
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	201
Psp1406I	AACGTT	1 cut(s)	648
Psp6I	CCWGG	3 cut(s)	53, 157, 259
PspGI	CCWGG	3 cut(s)	53, 157, 259
PspN4I	GGNNCC	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	574
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	465
SacI	GAGCTC	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	3 cut(s)	60, 384, 393
Sau3AI	GATC	3 cut(s)	357, 574, 676
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	3 cut(s)	55, 159, 261
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	8 cut(s)	67, 93, 140, 201, 318, 552, 651, 660
SfaNI	GCATC	3 cut(s)	457, 469, 586
SfcI	CTRYAG	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	465
Sse9I	AATT	4 cut(s)	145, 295, 486, 605
SseBI	AGGCCT	1 cut(s)	157
SsiI	CCGC	3 cut(s)	386, 393, 399
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	345
SstI	GAGCTC	1 cut(s)	201
StuI	AGGCCT	1 cut(s)	157
StyD4I	CCNGG	3 cut(s)	53, 157, 259
TaaI	ACNGT	1 cut(s)	643
TaiI	ACGT	3 cut(s)	93, 651, 660
TaqI	TCGA	2 cut(s)	594, 654
TasI	AATT	4 cut(s)	145, 295, 486, 605
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	1 cut(s)	635
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	3 cut(s)	246, 345, 526
TseFI	GTSAC	1 cut(s)	237
TseI	GCWGC	2 cut(s)	59, 383
Tsp45I	GTSAC	1 cut(s)	237
TspDTI	ATGAA	6 cut(s)	158, 204, 291, 453, 546, 556
TspRI	CASTG	3 cut(s)	246, 345, 526
Tth111I	GACNNNGTC	1 cut(s)	89
XapI	RAATTY	2 cut(s)	295, 605
XmnI	GAANNNNTTC	1 cut(s)	563
XspI	CTAG	1 cut(s)	345
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.