Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

67316090 .. 67319168

Gene Structure 3079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTGTCCGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTCAGGTGGTTGAACTATCTGAGGCCTGATATCATCAAAGGCAACATTACAGAAGATGAAGAAGAGCTCATCATCAGGCTCCACAAACTCCTGGGAAACAGATGGTCATTGATAGCCGGAAGGTTACCAGGGCGAACTGACAACGAAATAAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTACAAGAAGAAAATCAGTTAGAAGTGTCTAAAGATGAGGAGATCAAGGAGGGCTTGTCATCCTCTGCCGCTGATGAGGACGACCCACATTTGACCAAAGACAATGTCATTGAAGACGAAGATCATCGTCGTCAGCATCACGATGTTGACGTTGGAGTTGGAGTTGGAGTTGAAGCAACCAATAATAACGGTACTGGTGATGATGAATATCTGAGGGATGACCTTTGGTGGAACAATTTCATAATGGATTTCAATGCTACCCAACTCGACGTATCTGAATTCCAAACCGACTTCCCCGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

175

Amino Acids

20.28

Weight (kDa)

4.69

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	26 - 70	3.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	30 - 79	4.3e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	291
AcsI	RAATTY	2 cut(s)	202, 500
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	4 cut(s)	52, 335, 395, 475
AjnI	CCWGG	2 cut(s)	129, 166
AluBI	AGCT	2 cut(s)	106, 223
AluI	AGCT	2 cut(s)	106, 223
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	518
AoxI	GGCC	1 cut(s)	62
ApoI	RAATTY	2 cut(s)	202, 500
ArsI	GACNNNNNNTTYG	2 cut(s)	312, 344
Asp700I	GAANNNNTTC	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	108
BccI	CCATC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	131, 168
BcoDI	GTCTC	1 cut(s)	31
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	131, 168
BmeT110I	CYCGRG	1 cut(s)	518
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	2 cut(s)	131, 168
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	342
BsaBI	GATNNNNATC	1 cut(s)	429
BsaJI	CCNNGG	2 cut(s)	130, 167
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	6 cut(s)	263, 293, 369, 375, 399, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	2 cut(s)	203, 421
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	131, 168
BseDI	CCNNGG	2 cut(s)	130, 167
BseGI	GGATG	2 cut(s)	281, 445
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMII	CTCAG	3 cut(s)	50, 55, 425
BseNI	ACTGG	2 cut(s)	203, 421
BseRI	GAGGAG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	2 cut(s)	9, 156
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	264, 343
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	3 cut(s)	51, 54, 426
BspLI	GGNNCC	1 cut(s)	119
BspQI	GCTCTTC	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	203, 421
BssECI	CCNNGG	2 cut(s)	130, 167
BssMI	GATC	2 cut(s)	264, 343
Bst2UI	CCWGG	2 cut(s)	131, 168
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	3 cut(s)	11, 23, 96
BstDEI	CTNAG	3 cut(s)	41, 59, 434
BstEII	GGTNACC	1 cut(s)	162
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	281, 445
BstKTI	GATC	2 cut(s)	267, 346
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	264, 343
BstNI	CCWGG	2 cut(s)	131, 168
BstPI	GGTNACC	1 cut(s)	162
BstSCI	CCNGG	2 cut(s)	129, 166
BstV2I	GAAGAC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	281, 445
Csp6I	GTAC	1 cut(s)	414
CviJI	RGCY	6 cut(s)	64, 106, 118, 155, 223, 276
CviKI_1	RGCY	6 cut(s)	64, 106, 118, 155, 223, 276
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	3 cut(s)	41, 59, 434
DpnI	GATC	2 cut(s)	266, 345
DpnII	GATC	2 cut(s)	264, 343
Eam1104I	CTCTTC	3 cut(s)	11, 23, 96
EarI	CTCTTC	3 cut(s)	11, 23, 96
Ecl136II	GAGCTC	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	518
Eco91I	GGTNACC	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	162
EcoRI	GAATTC	2 cut(s)	202, 500
EcoRII	CCWGG	2 cut(s)	129, 166
EcoRV	GATATC	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	108
FaiI	YATR	1 cut(s)	464
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	2 cut(s)	268, 452
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	2 cut(s)	9, 156
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	1 cut(s)	39
HpaII	CCGG	2 cut(s)	9, 156
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	4 cut(s)	15, 60, 435, 499
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	2 cut(s)	354, 494
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4IV	ACGT	2 cut(s)	372, 492
HpyF3I	CTNAG	3 cut(s)	41, 59, 434
HpySE526I	ACGT	2 cut(s)	372, 492
Kzo9I	GATC	2 cut(s)	264, 343
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	123
LweI	GCATC	1 cut(s)	367
MaeII	ACGT	2 cut(s)	372, 492
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	2 cut(s)	266, 345
MboI	GATC	2 cut(s)	264, 343
MboII	GAAGA	8 cut(s)	28, 40, 104, 110, 113, 242, 347, 353
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	3 cut(s)	202, 457, 500
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	3 cut(s)	355, 361, 367
MnlI	CCTC	7 cut(s)	54, 210, 253, 265, 292, 295, 429
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	1 cut(s)	212
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	2 cut(s)	9, 156
MspR9I	CCNGG	2 cut(s)	131, 168
MvaI	CCWGG	2 cut(s)	131, 168
NdeII	GATC	2 cut(s)	264, 343
NlaIV	GGNNCC	1 cut(s)	119
PceI	AGGCCT	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	458
PflFI	GACNNNGTC	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	129, 166
PspEI	GGTNACC	1 cut(s)	162
PspGI	CCWGG	2 cut(s)	129, 166
PspN4I	GGNNCC	1 cut(s)	119
PsyI	GACNNNGTC	1 cut(s)	326
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	108
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	2 cut(s)	264, 343
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	2 cut(s)	131, 168
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	8 cut(s)	47, 108, 164, 212, 225, 375, 447, 495
SfaNI	GCATC	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	3 cut(s)	202, 457, 500
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	108
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	2 cut(s)	129, 166
TaaI	ACNGT	1 cut(s)	413
TaiI	ACGT	2 cut(s)	375, 495
TaqI	TCGA	1 cut(s)	489
TasI	AATT	3 cut(s)	202, 457, 500
TauI	GCSGC	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TspDTI	ATGAA	3 cut(s)	111, 441, 451
Tth111I	GACNNNGTC	1 cut(s)	326
XagI	CCTNNNNNAGG	1 cut(s)	214
XapI	RAATTY	2 cut(s)	202, 500
XmnI	GAANNNNTTC	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.