Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

67976484 .. 67977577

Gene Structure 1094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG507400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGTCGGAAAATGGGGCAAACTATCCAGGGAAACAGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTCAGGTGGTTGAACTATCTGAGGCCTGATATTATCAAAGGCAACATTACAGAAGAAGAAGAAGAGCTCATCATCAGGCTCCACAAACTCCTGGGAAACAGATGGTCATTGATAGCCGGAAGGATACCAGGGCGAACTGACAATGAAATAAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTACAACAAGAAAATCACTTAGAAGTGTCCAAAGATGAGGAGATCAAGGAGGACTTGTCATCCTCTGTCGTTGTTGCCGCTGCCACTGATGAGGACGTCTCACGTTTGACCAAAAACAATGTCATTGAAGACGAAGTTAATCATCGTCAGCATCATGATGCTGACGTTGGAGTTGGAGTTGCAGCTGAAGCAACTAACAATAAGGGTACTGGTGATGATGAATATCTGAGGGATGACCTTTGGCGGAACAATTTCATAATGGATTTCAATGATACCCAATTCGACGTATCTGAACTCCAAAACGACATCCCCGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

189

Amino Acids

21.78

Weight (kDa)

5.13

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	35 - 79	2.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	39 - 88	9.6e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	348
AciI	CCGC	2 cut(s)	327, 493
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	2 cut(s)	62, 456
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	3 cut(s)	79, 377, 517
AjnI	CCWGG	3 cut(s)	26, 156, 193
AluBI	AGCT	3 cut(s)	133, 250, 434
AluI	AGCT	3 cut(s)	133, 250, 434
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	58, 352
Ama87I	CYCGRG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	2 cut(s)	329, 431
ApoI	RAATTY	1 cut(s)	229
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
Asp700I	GAANNNNTTC	1 cut(s)	500
AsuHPI	GGTGA	1 cut(s)	473
AvaI	CYCGRG	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	316, 443
BccI	CCATC	1 cut(s)	162
BciT130I	CCWGG	3 cut(s)	28, 158, 195
BciVI	GTATCC	1 cut(s)	183
BcoDI	GTCTC	2 cut(s)	58, 352
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	3 cut(s)	327, 330, 432
BlsI	GCNGC	3 cut(s)	328, 331, 433
Bme1390I	CCNGG	3 cut(s)	28, 158, 195
BmeT110I	CYCGRG	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	3 cut(s)	28, 158, 195
BmsI	GCATC	2 cut(s)	397, 409
BpiI	GAAGAC	1 cut(s)	384
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BsaBI	GATNNNNATC	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	345
BsaJI	CCNNGG	3 cut(s)	27, 157, 194
BsaXI	ACNNNNNCTCC	4 cut(s)	290, 320, 411, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	2 cut(s)	230, 463
Bse8I	GATNNNNATC	1 cut(s)	471
BseBI	CCWGG	3 cut(s)	28, 158, 195
BseDI	CCNNGG	3 cut(s)	27, 157, 194
BseGI	GGATG	3 cut(s)	308, 487, 555
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMII	CTCAG	3 cut(s)	77, 82, 467
BseNI	ACTGG	2 cut(s)	230, 463
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	316, 443
BshFI	GGCC	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	2 cut(s)	58, 352
BsmBI	CGTCTC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	91
BsoBI	CYCGRG	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	2 cut(s)	327, 493
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	3 cut(s)	78, 81, 468
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	230, 463
BssECI	CCNNGG	3 cut(s)	27, 157, 194
BssMI	GATC	1 cut(s)	291
BssNI	GRCGYC	1 cut(s)	345
Bst2UI	CCWGG	3 cut(s)	28, 158, 195
Bst6I	CTCTTC	3 cut(s)	38, 50, 123
BstACI	GRCGYC	1 cut(s)	345
BstDEI	CTNAG	4 cut(s)	68, 86, 268, 476
BstENI	CCTNNNNNAGG	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	308, 487, 555
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	2 cut(s)	58, 352
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	3 cut(s)	28, 158, 195
BstSCI	CCNGG	3 cut(s)	26, 156, 193
BstV1I	GCAGC	2 cut(s)	316, 443
BstV2I	GAAGAC	1 cut(s)	384
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	91
BtsCI	GGATG	3 cut(s)	308, 487, 555
BtsIMutI	CAGTG	1 cut(s)	333
CciI	TCATGA	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	1 cut(s)	404
CviJI	RGCY	6 cut(s)	91, 133, 145, 182, 250, 434
CviKI_1	RGCY	6 cut(s)	91, 133, 145, 182, 250, 434
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	4 cut(s)	68, 86, 268, 476
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
Eam1104I	CTCTTC	3 cut(s)	38, 50, 123
EarI	CTCTTC	3 cut(s)	38, 50, 123
EciI	GGCGGA	1 cut(s)	508
Ecl136II	GAGCTC	1 cut(s)	133
Eco147I	AGGCCT	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	2 cut(s)	62, 456
Eco88I	CYCGRG	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	229
EcoRII	CCWGG	3 cut(s)	26, 156, 193
EcoT38I	GRGCYC	1 cut(s)	135
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	1 cut(s)	407
FaiI	YATR	2 cut(s)	405, 506
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FatI	CATG	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	327, 330, 432
FokI	GGATG	3 cut(s)	295, 494, 542
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	3 cut(s)	327, 330, 432
GluI	GCNGC	3 cut(s)	327, 330, 432
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	407
HinfI	GANTC	1 cut(s)	66
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	473
Hpy188I	TCNGA	5 cut(s)	8, 42, 87, 477, 541
Hpy188III	TCNNGA	1 cut(s)	404
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	1 cut(s)	180
HpyCH4IV	ACGT	4 cut(s)	345, 352, 414, 534
HpyCH4V	TGCA	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	4 cut(s)	68, 86, 268, 476
HpySE526I	ACGT	4 cut(s)	345, 352, 414, 534
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	407
Kzo9I	GATC	1 cut(s)	291
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	150
Lsp1109I	GCAGC	2 cut(s)	316, 443
LweI	GCATC	2 cut(s)	397, 409
MaeII	ACGT	4 cut(s)	345, 352, 414, 534
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	7 cut(s)	55, 67, 131, 134, 137, 140, 389
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	3 cut(s)	229, 499, 527
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	397, 403
MnlI	CCTC	7 cut(s)	81, 237, 280, 292, 322, 334, 471
MroXI	GAANNNNTTC	1 cut(s)	500
MseI	TTAA	2 cut(s)	239, 387
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	2 cut(s)	329, 434
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	3 cut(s)	28, 158, 195
MvaI	CCWGG	3 cut(s)	28, 158, 195
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	1 cut(s)	146
PagI	TCATGA	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	500
PkrI	GCNGC	3 cut(s)	328, 331, 433
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	3 cut(s)	26, 156, 193
PspGI	CCWGG	3 cut(s)	26, 156, 193
PspN4I	GGNNCC	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	239, 387
SatI	GCNGC	3 cut(s)	327, 330, 432
Sau3AI	GATC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	3 cut(s)	28, 158, 195
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	2 cut(s)	397, 409
SmiMI	CAYNNNNRTG	1 cut(s)	405
Sse9I	AATT	3 cut(s)	229, 499, 527
SseBI	AGGCCT	1 cut(s)	91
SsiI	CCGC	2 cut(s)	327, 493
SstI	GAGCTC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	91
StyD4I	CCNGG	3 cut(s)	26, 156, 193
TaiI	ACGT	4 cut(s)	348, 355, 417, 537
TaqI	TCGA	1 cut(s)	531
TasI	AATT	3 cut(s)	229, 499, 527
TauI	GCSGC	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	239, 387
Tru9I	TTAA	2 cut(s)	239, 387
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	2 cut(s)	329, 431
TspDTI	ATGAA	3 cut(s)	225, 483, 493
TspRI	CASTG	1 cut(s)	340
XagI	CCTNNNNNAGG	1 cut(s)	241
XapI	RAATTY	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	500
ZraI	GACGTC	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.