Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Forward (+)

59378590 .. 59381204

Gene Structure 2615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00041480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTGTTTGTTGGCAGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTTAGGTGGATGAACTATCTGAGGCCTGATATTATCAGAGGCAACATTAAAGAAGATGAAGAAGAGCTTATCATCAGGCTCCACAAACTCTTGGGAAACAGATGGTCATTGATAGCTGGAAGGATACCAGGGCGAACTGACAATGAAATAAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTACAACAAGAAAATCACTTAGAAGTGTTTAAAGATGAGGAGATCAAGGAGGACTGGTCATCCTCTGCCGTTGTTGCTGCTGCTGCTGATGATGATGAGGAAAACCCACGTTTGACCAGAATCAATGTCATTGAAGACGAAGATCATCATCGTCAGCATTACGATATTGACGTTGGAGTTGAAGCAACTAATAATAACGGTATTGGTGATGATGAATATCTGAGGGATGACCTTTGGTGGAACAATTTCATTGTGGATTTCAATGATACCCAACTCGACCTATCTGACTTCCAAACTGACTTCCCCGAGAATTGGGAATCTAAGGCGAACATTATCGATGTCGGAGATTGCTGCACCGATCAACAAGACATGCCAAATAATATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

205

Amino Acids

23.96

Weight (kDa)

4.54

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	28 - 72	1.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	33 - 90	1.4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	222, 540
AgsI	TTSAA	3 cut(s)	362, 410, 490
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	3 cut(s)	112, 161, 229
AluI	AGCT	3 cut(s)	112, 161, 229
Alw26I	GTCTC	1 cut(s)	37
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	4 cut(s)	305, 308, 311, 579
ApoI	RAATTY	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	446
AvaI	CYCGRG	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	369
BbvI	GCAGC	4 cut(s)	292, 295, 298, 566
BccI	CCATC	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	174
BciVI	GTATCC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	37
BfuAI	ACCTGC	1 cut(s)	5
BfuI	GTATCC	1 cut(s)	162
BisI	GCNGC	4 cut(s)	306, 309, 312, 580
BlsI	GCNGC	4 cut(s)	307, 310, 313, 581
Bme1390I	CCNGG	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	533
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	369
Bsa29I	ATCGAT	1 cut(s)	564
BsaBI	GATNNNNATC	2 cut(s)	375, 444
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 540
Bse1I	ACTGG	2 cut(s)	209, 287
Bse8I	GATNNNNATC	2 cut(s)	375, 444
BseBI	CCWGG	1 cut(s)	174
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	3 cut(s)	60, 287, 460
BseJI	GATNNNNATC	2 cut(s)	375, 444
BseLI	CCNNNNNNNGG	2 cut(s)	222, 540
BseMII	CTCAG	2 cut(s)	56, 440
BseNI	ACTGG	2 cut(s)	209, 287
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	4 cut(s)	292, 295, 298, 566
BsgI	GTGCAG	1 cut(s)	565
BshFI	GGCC	1 cut(s)	70
BshVI	ATCGAT	1 cut(s)	564
BsiHKCI	CYCGRG	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	222, 540
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	533
Bsp143I	GATC	3 cut(s)	270, 370, 586
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	2 cut(s)	57, 441
BspDI	ATCGAT	1 cut(s)	564
BspLI	GGNNCC	1 cut(s)	125
BspMI	ACCTGC	1 cut(s)	5
BspQI	GCTCTTC	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	209, 287
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	3 cut(s)	270, 370, 586
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	428
Bst6I	CTCTTC	3 cut(s)	17, 29, 102
BstDEI	CTNAG	5 cut(s)	47, 65, 247, 449, 549
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	60, 287, 460
BstKTI	GATC	3 cut(s)	273, 373, 589
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	3 cut(s)	270, 370, 586
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 311
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	1 cut(s)	172
BstV1I	GCAGC	4 cut(s)	292, 295, 298, 566
BstV2I	GAAGAC	1 cut(s)	369
Bsu15I	ATCGAT	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	70
BsuTUI	ATCGAT	1 cut(s)	564
BtsCI	GGATG	3 cut(s)	60, 287, 460
BveI	ACCTGC	1 cut(s)	5
ClaI	ATCGAT	1 cut(s)	564
CviAII	CATG	1 cut(s)	598
CviJI	RGCY	5 cut(s)	70, 112, 124, 161, 229
CviKI_1	RGCY	5 cut(s)	70, 112, 124, 161, 229
DdeI	CTNAG	5 cut(s)	47, 65, 247, 449, 549
DpnI	GATC	3 cut(s)	272, 372, 588
DpnII	GATC	3 cut(s)	270, 370, 586
DraI	TTTAAA	1 cut(s)	259
Eam1104I	CTCTTC	3 cut(s)	17, 29, 102
EarI	CTCTTC	3 cut(s)	17, 29, 102
Eco147I	AGGCCT	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	533
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	1 cut(s)	601
FaiI	YATR	1 cut(s)	599
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	1 cut(s)	597
Fnu4HI	GCNGC	4 cut(s)	306, 309, 312, 580
FokI	GGATG	3 cut(s)	67, 274, 467
Fsp4HI	GCNGC	4 cut(s)	306, 309, 312, 580
GluI	GCNGC	4 cut(s)	306, 309, 312, 580
HaeIII	GGCC	1 cut(s)	70
Hin1II	CATG	1 cut(s)	601
HinfI	GANTC	2 cut(s)	348, 545
HphI	GGTGA	1 cut(s)	446
Hpy188I	TCNGA	6 cut(s)	21, 66, 83, 450, 514, 572
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	2 cut(s)	337, 399
HpyCH4V	TGCA	1 cut(s)	582
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 311
HpyF3I	CTNAG	5 cut(s)	47, 65, 247, 449, 549
HpySE526I	ACGT	2 cut(s)	337, 399
Hsp92II	CATG	1 cut(s)	601
Kzo9I	GATC	3 cut(s)	270, 370, 586
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	8 cut(s)	84, 106, 147, 159, 186, 190, 268, 358
Lsp1109I	GCAGC	4 cut(s)	292, 295, 298, 566
MaeII	ACGT	2 cut(s)	337, 399
MalI	GATC	3 cut(s)	272, 372, 588
MboI	GATC	3 cut(s)	270, 370, 586
MboII	GAAGA	7 cut(s)	34, 46, 110, 116, 119, 374, 380
MluCI	AATT	3 cut(s)	208, 472, 538
MmeI	TCCRAC	2 cut(s)	382, 550
MnlI	CCTC	8 cut(s)	60, 77, 216, 259, 271, 301, 319, 444
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	3 cut(s)	93, 218, 258
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	302, 311
NdeII	GATC	3 cut(s)	270, 370, 586
NlaIII	CATG	1 cut(s)	601
NlaIV	GGNNCC	1 cut(s)	125
NspI	RCATGY	1 cut(s)	601
PceI	AGGCCT	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	348, 545
PkrI	GCNGC	4 cut(s)	307, 310, 313, 581
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	93, 218, 258
SatI	GCNGC	4 cut(s)	306, 309, 312, 580
Sau3AI	GATC	3 cut(s)	270, 370, 586
ScrFI	CCNGG	1 cut(s)	174
Sse9I	AATT	3 cut(s)	208, 472, 538
SseBI	AGGCCT	1 cut(s)	70
SspI	AATATT	1 cut(s)	610
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	2 cut(s)	340, 402
TaqI	TCGA	2 cut(s)	504, 564
TasI	AATT	3 cut(s)	208, 472, 538
TfiI	GAWTC	2 cut(s)	348, 545
Tru1I	TTAA	3 cut(s)	93, 218, 258
Tru9I	TTAA	3 cut(s)	93, 218, 258
TseI	GCWGC	4 cut(s)	305, 308, 311, 579
TspDTI	ATGAA	5 cut(s)	71, 117, 204, 456, 466
XagI	CCTNNNNNAGG	1 cut(s)	220
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.