Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

35633753 .. 35635547

Gene Structure 1795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G025080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTGTTTGTTGGCAGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTTAGGTGGATGAACTATCTGAGGCCTGATATCATCAGAGGCTACATTAAAGAAGATGAAGAAGAGCTCATCATCAGGCTCCACAAACTCCTGGGAAACAGATGGTCATTGATAGCTGGAAGGATACCAGGGCGAACTGACAATGAAATCAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTGGAACAAGAAAATCACTTAGAAGTGTTTAAAGATGAGGAGATCAAGGAGGACTTGCCATCCTCTGTTGCTGCTGCAGATGAGGAAAACCCACGTTTGACCAAAAACAATGTCGTTGAAGACGAAGATCATCATCGTCAGCATTACGATGTTGACGTTGGAGTTGGAGTTGGAGTGGAAGCAACTAATAATAACGGTATTGGTGATGATGAATATCTGAGGGATGACCTTTGGTGGAACAATTTCATAGTGGATTTCAATGATACCCAACTCGACGTATCTGACTTCCAAACCGACTTCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

177

Amino Acids

20.71

Weight (kDa)

4.79

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	30 - 72	1.4e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	33 - 90	1.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	347, 487
AjnI	CCWGG	2 cut(s)	135, 172
AluBI	AGCT	3 cut(s)	112, 161, 229
AluI	AGCT	3 cut(s)	112, 161, 229
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	299, 302
ApoI	RAATTY	1 cut(s)	208
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
Asp700I	GAANNNNTTC	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	286, 289
BccI	CCATC	2 cut(s)	141, 295
BciT130I	CCWGG	2 cut(s)	137, 174
BciVI	GTATCC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	5
BfuI	GTATCC	1 cut(s)	162
BisI	GCNGC	2 cut(s)	300, 303
BlsI	GCNGC	2 cut(s)	301, 304
Bme1390I	CCNGG	2 cut(s)	137, 174
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	137, 174
BpiI	GAAGAC	1 cut(s)	354
BsaBI	GATNNNNATC	2 cut(s)	360, 441
BsaJI	CCNNGG	2 cut(s)	136, 173
BsaXI	ACNNNNNCTCC	4 cut(s)	381, 387, 411, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	209
Bse8I	GATNNNNATC	2 cut(s)	360, 441
BseBI	CCWGG	2 cut(s)	137, 174
BseDI	CCNNGG	2 cut(s)	136, 173
BseGI	GGATG	3 cut(s)	60, 287, 457
BseJI	GATNNNNATC	2 cut(s)	360, 441
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	56, 437
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	286, 289
BshFI	GGCC	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	270, 355
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	2 cut(s)	57, 438
BspLI	GGNNCC	1 cut(s)	125
BspMAI	CTGCAG	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	5
BspQI	GCTCTTC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	136, 173
BssMI	GATC	2 cut(s)	270, 355
Bst2UI	CCWGG	2 cut(s)	137, 174
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	3 cut(s)	17, 29, 102
BstDEI	CTNAG	4 cut(s)	47, 65, 247, 446
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	60, 287, 457
BstKTI	GATC	2 cut(s)	273, 358
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	270, 355
BstNI	CCWGG	2 cut(s)	137, 174
BstSCI	CCNGG	2 cut(s)	135, 172
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	286, 289
BstV2I	GAAGAC	1 cut(s)	354
BsuI	GTATCC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	60, 287, 457
BveI	ACCTGC	1 cut(s)	5
CviJI	RGCY	6 cut(s)	70, 87, 112, 124, 161, 229
CviKI_1	RGCY	6 cut(s)	70, 87, 112, 124, 161, 229
DdeI	CTNAG	4 cut(s)	47, 65, 247, 446
DpnI	GATC	2 cut(s)	272, 357
DpnII	GATC	2 cut(s)	270, 355
DraI	TTTAAA	1 cut(s)	259
Eam1104I	CTCTTC	3 cut(s)	17, 29, 102
EarI	CTCTTC	3 cut(s)	17, 29, 102
Ecl136II	GAGCTC	1 cut(s)	112
Eco147I	AGGCCT	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	135, 172
EcoRV	GATATC	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	114
FaiI	YATR	1 cut(s)	476
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
Fnu4HI	GCNGC	2 cut(s)	300, 303
FokI	GGATG	3 cut(s)	67, 274, 464
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	300, 303
GluI	GCNGC	2 cut(s)	300, 303
HaeIII	GGCC	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	5 cut(s)	21, 66, 83, 447, 511
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	3 cut(s)	322, 384, 504
HpyCH4V	TGCA	1 cut(s)	305
HpyF3I	CTNAG	4 cut(s)	47, 65, 247, 446
HpySE526I	ACGT	3 cut(s)	322, 384, 504
Kzo9I	GATC	2 cut(s)	270, 355
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	9 cut(s)	84, 106, 122, 147, 149, 159, 186, 190, 215
Lsp1109I	GCAGC	2 cut(s)	286, 289
MaeII	ACGT	3 cut(s)	322, 384, 504
MalI	GATC	2 cut(s)	272, 357
MboI	GATC	2 cut(s)	270, 355
MboII	GAAGA	7 cut(s)	34, 46, 110, 116, 119, 359, 365
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	208, 469
MmeI	TCCRAC	3 cut(s)	367, 373, 379
MnlI	CCTC	8 cut(s)	60, 77, 216, 259, 271, 301, 304, 441
MroXI	GAANNNNTTC	1 cut(s)	470
MseI	TTAA	3 cut(s)	93, 218, 258
MslI	CAYNNNNRTG	1 cut(s)	375
MspR9I	CCNGG	2 cut(s)	137, 174
MvaI	CCWGG	2 cut(s)	137, 174
NdeII	GATC	2 cut(s)	270, 355
NlaIV	GGNNCC	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	2 cut(s)	348, 381
PdmI	GAANNNNTTC	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	301, 304
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	135, 172
PspGI	CCWGG	2 cut(s)	135, 172
PspN4I	GGNNCC	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	93, 218, 258
SatI	GCNGC	2 cut(s)	300, 303
Sau3AI	GATC	2 cut(s)	270, 355
ScrFI	CCNGG	2 cut(s)	137, 174
SduI	GDGCHC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	375
Sse9I	AATT	2 cut(s)	208, 469
SseBI	AGGCCT	1 cut(s)	70
SstI	GAGCTC	1 cut(s)	114
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	2 cut(s)	135, 172
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	3 cut(s)	325, 387, 507
TaqI	TCGA	1 cut(s)	501
TasI	AATT	2 cut(s)	208, 469
Tru1I	TTAA	3 cut(s)	93, 218, 258
Tru9I	TTAA	3 cut(s)	93, 218, 258
TseI	GCWGC	2 cut(s)	299, 302
TspDTI	ATGAA	5 cut(s)	71, 117, 204, 453, 463
XagI	CCTNNNNNAGG	1 cut(s)	220
XapI	RAATTY	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.