Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

71191682 .. 71192940

Gene Structure 1259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG518300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGGCGAAGCAGTACTTACTATGATAAGGATGATGGACTGAAGAAAGGAGCCTGGGCTGCAAGTGAAGACCAGATTGTCAAAGCCTACGTCAAAAAACACGGTGTCGGAAAATGGGGCAAACTATCCAGGGAAACAGGAAATTCAAGTCTGAAGAGATGTGGGAAGAGGGTGAGACTCAGGTGGTTGAACCATCTGAGGCCTGATATCATCAAAGGCAACATTACAGAAGATGAAGAAGAGCTCATCATCAGGCTCCACAAACTCTTGGGAAACAGATGGTCATTGATAGCCGGAAGGTTACCAGGGCGAACTGACAATGAAATCAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTACAACAAGAAAATCACTTAGAAGTGTCTAAAGATGAGGAGATCAAGGAGGGCTTGTCATCCTCTGCCGCTGCTGCAGATGAGGACGACCCACATTTGACCAAAAACAATGTCATTGAAGACGAAGATCATCATCGTCAGCATCACGATGTTGACGTTGGAGTTGGAGTTGGAGTTGGAGTTGAAGCAACCAATAATAACGGTACTGGTGATGATGAATATCTGAGGGATGACCTTTGGTGGAGCAATTTCATAATGGATTTCAATGCTACCCAACTCGACGTATCTGAATTCCAAACCGACTTTCCCGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

225

Amino Acids

25.68

Weight (kDa)

5.51

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 66	1.1e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 80	5.1e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	72 - 116	5.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	76 - 125	3.9e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AciI	CCGC	1 cut(s)	429
AcsI	RAATTY	3 cut(s)	142, 340, 650
AcuI	CTGAAG	2 cut(s)	62, 173
AfaI	GTAC	2 cut(s)	16, 565
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	5 cut(s)	147, 190, 479, 545, 625
AjnI	CCWGG	3 cut(s)	53, 128, 304
AjuI	GAANNNNNNNTTGG	1 cut(s)	648
AluBI	AGCT	2 cut(s)	244, 361
AluI	AGCT	2 cut(s)	244, 361
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	668
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	3 cut(s)	59, 431, 434
ApoI	RAATTY	3 cut(s)	142, 340, 650
ArsI	GACNNNNNNTTYG	4 cut(s)	75, 107, 456, 488
AsuHPI	GGTGA	2 cut(s)	184, 581
AvaI	CYCGRG	1 cut(s)	668
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	2 cut(s)	75, 486
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	46, 418, 421
BccI	CCATC	3 cut(s)	29, 201, 273
BciT130I	CCWGG	3 cut(s)	55, 130, 306
BcoDI	GTCTC	1 cut(s)	169
BfmI	CTRYAG	1 cut(s)	435
BisI	GCNGC	4 cut(s)	60, 429, 432, 435
BlsI	GCNGC	4 cut(s)	61, 430, 433, 436
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	3 cut(s)	55, 130, 306
BmeT110I	CYCGRG	1 cut(s)	668
BmiI	GGNNCC	2 cut(s)	52, 257
BmrFI	CCNGG	3 cut(s)	55, 130, 306
BmsI	GCATC	1 cut(s)	511
BpiI	GAAGAC	2 cut(s)	75, 486
BsaBI	GATNNNNATC	2 cut(s)	492, 579
BsaJI	CCNNGG	3 cut(s)	54, 129, 305
BsaXI	ACNNNNNCTCC	8 cut(s)	401, 431, 513, 519, 525, 543, 549, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse1I	ACTGG	2 cut(s)	341, 571
Bse8I	GATNNNNATC	2 cut(s)	492, 579
BseBI	CCWGG	3 cut(s)	55, 130, 306
BseDI	CCNNGG	3 cut(s)	54, 129, 305
BseGI	GGATG	3 cut(s)	37, 419, 595
BseJI	GATNNNNATC	2 cut(s)	492, 579
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMII	CTCAG	3 cut(s)	188, 193, 575
BseNI	ACTGG	2 cut(s)	341, 571
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	3 cut(s)	46, 418, 421
BshFI	GGCC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	668
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	668
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	402, 487
BspACI	CCGC	1 cut(s)	429
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	3 cut(s)	189, 192, 576
BspLI	GGNNCC	2 cut(s)	52, 257
BspMAI	CTGCAG	1 cut(s)	439
BspQI	GCTCTTC	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	341, 571
BssECI	CCNNGG	3 cut(s)	54, 129, 305
BssMI	GATC	2 cut(s)	402, 487
Bst2UI	CCWGG	3 cut(s)	55, 130, 306
Bst4CI	ACNGT	2 cut(s)	104, 563
Bst6I	CTCTTC	3 cut(s)	149, 161, 234
BstDEI	CTNAG	4 cut(s)	179, 197, 379, 584
BstEII	GGTNACC	1 cut(s)	300
BstENI	CCTNNNNNAGG	1 cut(s)	352
BstF5I	GGATG	3 cut(s)	37, 419, 595
BstKTI	GATC	2 cut(s)	405, 490
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	2 cut(s)	402, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 434
BstNI	CCWGG	3 cut(s)	55, 130, 306
BstPI	GGTNACC	1 cut(s)	300
BstSCI	CCNGG	3 cut(s)	53, 128, 304
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	3 cut(s)	46, 418, 421
BstV2I	GAAGAC	2 cut(s)	75, 486
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	3 cut(s)	37, 419, 595
Csp6I	GTAC	2 cut(s)	15, 564
CviJI	RGCY	9 cut(s)	53, 59, 86, 202, 244, 256, 293, 361, 414
CviKI_1	RGCY	9 cut(s)	53, 59, 86, 202, 244, 256, 293, 361, 414
CviQI	GTAC	2 cut(s)	15, 564
DdeI	CTNAG	4 cut(s)	179, 197, 379, 584
DpnI	GATC	2 cut(s)	404, 489
DpnII	GATC	2 cut(s)	402, 487
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	149, 161, 234
EarI	CTCTTC	3 cut(s)	149, 161, 234
Ecl136II	GAGCTC	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	246
Eco32I	GATATC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	2 cut(s)	62, 173
Eco88I	CYCGRG	1 cut(s)	668
Eco91I	GGTNACC	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	352
EcoO65I	GGTNACC	1 cut(s)	300
EcoRI	GAATTC	2 cut(s)	340, 650
EcoRII	CCWGG	3 cut(s)	53, 128, 304
EcoRV	GATATC	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	246
FaiI	YATR	2 cut(s)	24, 614
FalI	AAGNNNNNCTT	3 cut(s)	33, 398, 430
Fnu4HI	GCNGC	4 cut(s)	60, 429, 432, 435
FokI	GGATG	3 cut(s)	44, 406, 602
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	60, 429, 432, 435
GluI	GCNGC	4 cut(s)	60, 429, 432, 435
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	2 cut(s)	184, 581
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	5 cut(s)	110, 153, 198, 585, 649
Hpy188III	TCNNGA	2 cut(s)	506, 668
Hpy8I	GTNNAC	1 cut(s)	514
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	2 cut(s)	104, 563
HpyCH4IV	ACGT	3 cut(s)	90, 516, 642
HpyCH4V	TGCA	2 cut(s)	62, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 434
HpyF3I	CTNAG	4 cut(s)	179, 197, 379, 584
HpySE526I	ACGT	3 cut(s)	90, 516, 642
Kzo9I	GATC	2 cut(s)	402, 487
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	3 cut(s)	50, 261, 603
Lsp1109I	GCAGC	3 cut(s)	46, 418, 421
LweI	GCATC	1 cut(s)	511
MaeII	ACGT	3 cut(s)	90, 516, 642
MaeIII	GTNAC	1 cut(s)	300
MalI	GATC	2 cut(s)	404, 489
MboI	GATC	2 cut(s)	402, 487
MboII	GAAGA	9 cut(s)	55, 80, 166, 178, 242, 248, 251, 491, 497
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	4 cut(s)	142, 340, 607, 650
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	5 cut(s)	88, 499, 505, 511, 517
MnlI	CCTC	8 cut(s)	162, 192, 348, 391, 403, 433, 436, 579
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	3 cut(s)	55, 130, 306
MvaI	CCWGG	3 cut(s)	55, 130, 306
MwoI	GCNNNNNNNGC	2 cut(s)	59, 434
NdeII	GATC	2 cut(s)	402, 487
NlaIV	GGNNCC	2 cut(s)	52, 257
PceI	AGGCCT	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PkrI	GCNGC	4 cut(s)	61, 430, 433, 436
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	3 cut(s)	53, 128, 304
PspEI	GGTNACC	1 cut(s)	300
PspGI	CCWGG	3 cut(s)	53, 128, 304
PspN4I	GGNNCC	2 cut(s)	52, 257
PstI	CTGCAG	1 cut(s)	439
RsaI	GTAC	2 cut(s)	16, 565
RsaNI	GTAC	2 cut(s)	15, 564
RseI	CAYNNNNRTG	1 cut(s)	507
SacI	GAGCTC	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	4 cut(s)	60, 429, 432, 435
Sau3AI	GATC	2 cut(s)	402, 487
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	3 cut(s)	55, 130, 306
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	9 cut(s)	93, 185, 246, 302, 350, 363, 519, 597, 645
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	507
Sse9I	AATT	4 cut(s)	142, 340, 607, 650
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	429
SstI	GAGCTC	1 cut(s)	246
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	3 cut(s)	53, 128, 304
TaaI	ACNGT	2 cut(s)	104, 563
TaiI	ACGT	3 cut(s)	93, 519, 645
TaqI	TCGA	1 cut(s)	639
TasI	AATT	4 cut(s)	142, 340, 607, 650
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	431
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseI	GCWGC	3 cut(s)	59, 431, 434
TspDTI	ATGAA	4 cut(s)	249, 336, 591, 601
XagI	CCTNNNNNAGG	1 cut(s)	352
XapI	RAATTY	3 cut(s)	142, 340, 650
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.