Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

34473585 .. 34474879

Gene Structure 1295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033940

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGGAGAAGCAGTACTTACTATGATAAGAATGGACTGAAGAAAGGAGCCTGGGCTGCAAGTGAAGACCGCATTGTCAAAGACTACGTCAAAAAACACGGTCTGAAGAGATGTGGAAAGAGTGTGAGACTTAGGTGGATGAACTACCTGAGGCCCGATATCATCAGAGGCAACATTAAAGAAGATGAAGAAGAGCTCATCATCAAGCTCCACAAACTCTTGGGAAACAGATGGTCATTGATAGCTGGAAGGATACCAGGGCGAACTGACAATGAAATCAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTGGAACAAGAAAATCACTTAGAAGTGTTTAAAGATAAGGAGGTCAAGGAGGACTTGTCATCCTCTGCCGTTGTTGCTGCTGCTGATGATGAGGAAAACCCACGTTTGACCAAAAAGAATGTCATTGAAGACGAAGATTATCGTCACCATTACGATGTTGACGTTGGAGTTGGAGTTGAAGCAACTAATAATAACGGTATTGGTGATGATGAATATCTGAGGGATGACCTTTGGTGGAACAATTTCATAGTGGATTTCAATGATACCCAACTTGACGTATCTGACTTCCAAACCGACTTCCCCAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

208

Amino Acids

24.26

Weight (kDa)

5.64

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	56 - 100	7.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	61 - 109	2.4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AciI	CCGC	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	2 cut(s)	59, 125
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	440, 491, 571
AjnI	CCWGG	2 cut(s)	50, 256
AluBI	AGCT	4 cut(s)	196, 208, 245, 313
AluI	AGCT	4 cut(s)	196, 208, 245, 313
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	121
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	3 cut(s)	56, 389, 392
ApoI	RAATTY	1 cut(s)	292
ArsI	GACNNNNNNTTYG	4 cut(s)	72, 104, 417, 449
Asp700I	GAANNNNTTC	1 cut(s)	554
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	449, 527
AxyI	CCTNAGG	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	198
BbsI	GAAGAC	2 cut(s)	72, 447
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	43, 376, 379
BccI	CCATC	1 cut(s)	225
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	2 cut(s)	52, 258
BciVI	GTATCC	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	121
BfuI	GTATCC	1 cut(s)	246
BisI	GCNGC	3 cut(s)	57, 390, 393
BlsI	GCNGC	3 cut(s)	58, 391, 394
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	52, 258
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	2 cut(s)	52, 258
BpiI	GAAGAC	2 cut(s)	72, 447
BsaBI	GATNNNNATC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	51, 257
BsaXI	ACNNNNNCTCC	5 cut(s)	28, 353, 383, 471, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	293
Bse21I	CCTNAGG	1 cut(s)	149
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	52, 258
BseDI	CCNNGG	2 cut(s)	51, 257
BseGI	GGATG	3 cut(s)	144, 371, 541
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	140, 521
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	43, 376, 379
BshFI	GGCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	198
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	2 cut(s)	141, 522
BspLI	GGNNCC	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	2 cut(s)	51, 257
Bst2UI	CCWGG	2 cut(s)	52, 258
Bst4CI	ACNGT	2 cut(s)	101, 509
Bst6I	CTCTTC	2 cut(s)	101, 186
BstDEI	CTNAG	4 cut(s)	131, 149, 331, 530
BstENI	CCTNNNNNAGG	1 cut(s)	304
BstF5I	GGATG	3 cut(s)	144, 371, 541
BstMAI	GTCTC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 386
BstNI	CCWGG	2 cut(s)	52, 258
BstSCI	CCNGG	2 cut(s)	50, 256
BstV1I	GCAGC	3 cut(s)	43, 376, 379
BstV2I	GAAGAC	2 cut(s)	72, 447
Bsu36I	CCTNAGG	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	3 cut(s)	144, 371, 541
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	15
CviJI	RGCY	7 cut(s)	50, 56, 154, 196, 208, 245, 313
CviKI_1	RGCY	7 cut(s)	50, 56, 154, 196, 208, 245, 313
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	4 cut(s)	131, 149, 331, 530
DraI	TTTAAA	1 cut(s)	343
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	2 cut(s)	101, 186
EarI	CTCTTC	2 cut(s)	101, 186
Ecl136II	GAGCTC	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	198
Eco32I	GATATC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	59, 125
Eco81I	CCTNAGG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	196
EcoNI	CCTNNNNNAGG	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	2 cut(s)	50, 256
EcoRV	GATATC	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	198
FaiI	YATR	2 cut(s)	24, 560
FalI	AAGNNNNNCTT	3 cut(s)	33, 350, 382
Fnu4HI	GCNGC	3 cut(s)	57, 390, 393
FokI	GGATG	3 cut(s)	151, 358, 548
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	3 cut(s)	57, 390, 393
GluI	GCNGC	3 cut(s)	57, 390, 393
HaeIII	GGCC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HphI	GGTGA	2 cut(s)	449, 527
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	4 cut(s)	105, 167, 531, 595
Hpy8I	GTNNAC	1 cut(s)	472
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	101, 509
HpyCH4IV	ACGT	4 cut(s)	87, 415, 474, 588
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 386
HpyF3I	CTNAG	4 cut(s)	131, 149, 331, 530
HpySE526I	ACGT	4 cut(s)	87, 415, 474, 588
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	2 cut(s)	47, 213
LpnPI	CCDG	8 cut(s)	37, 64, 161, 231, 243, 270, 274, 299
Lsp1109I	GCAGC	3 cut(s)	43, 376, 379
MaeII	ACGT	4 cut(s)	87, 415, 474, 588
MaeIII	GTNAC	1 cut(s)	455
MboII	GAAGA	8 cut(s)	52, 77, 118, 194, 200, 203, 452, 458
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	3 cut(s)	292, 553, 619
MmeI	TCCRAC	2 cut(s)	457, 463
MnlI	CCTC	8 cut(s)	144, 161, 300, 346, 355, 385, 397, 525
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	3 cut(s)	177, 302, 342
MslI	CAYNNNNRTG	1 cut(s)	465
MspR9I	CCNGG	2 cut(s)	52, 258
MvaI	CCWGG	2 cut(s)	52, 258
MwoI	GCNNNNNNNGC	2 cut(s)	56, 386
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	455
PciSI	GCTCTTC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	554
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	58, 391, 394
Psp124BI	GAGCTC	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	50, 256
PspGI	CCWGG	2 cut(s)	50, 256
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	465
SacI	GAGCTC	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	177, 302, 342
SatI	GCNGC	3 cut(s)	57, 390, 393
Sau96I	GGNCC	1 cut(s)	153
ScaI	AGTACT	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	52, 258
SduI	GDGCHC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	465
Sse9I	AATT	3 cut(s)	292, 553, 619
SsiI	CCGC	1 cut(s)	70
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	50, 256
TaaI	ACNGT	2 cut(s)	101, 509
TaiI	ACGT	4 cut(s)	90, 418, 477, 591
TasI	AATT	3 cut(s)	292, 553, 619
TatI	WGTACW	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	177, 302, 342
Tru9I	TTAA	3 cut(s)	177, 302, 342
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	3 cut(s)	56, 389, 392
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	5 cut(s)	155, 201, 288, 537, 547
Tth111I	GACNNNGTC	1 cut(s)	86
XagI	CCTNNNNNAGG	1 cut(s)	304
XapI	RAATTY	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	554
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.