Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002888.1

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

222151 .. 223303

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002888.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggtgatgagaagcagtacttactatgataagaatgatggactgaagaaaggagcctgggctgcaagtgaagaccagattgtcaaagcctacgtcaaaaaacacggtctgaagagatgtgggaagggtgtgagactcaggtggttgaactatctgaggcctgatattatcaaaggcaacattacagaagatgaagaagagctcatcatcaggctccacaaactcctgggaaacagatggtcattgatagccggaaggataccagggagaactgacaatgaaatcaaaaactactggaattccaccttaaagaggaagctacaacaagaaaatcacttagaagtgtccaaagatgaggagatcaaggaggacttgtcatcctctgtcgttgttgccgctgccactgatgaggacgccccacgtttgaccaaaaacaatgtcattgaagacgaagatcatcatcgtcagcatcatgatgctgacgttggaggtggagttgcagctgaagcaactaataataagggtactggtgatgatgaatatctgagggatgacctttggtggaacaatttcataatggatttcaatgatagccaattcgacgtatctgaattccaaaacgacatccccgagatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

212

Amino Acids

24.39

Weight (kDa)

5.22

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AciI	CCGC	1 cut(s)	396
AcsI	RAATTY	2 cut(s)	298, 611
AcuI	CTGAAG	3 cut(s)	65, 131, 525
AcyI	GRCGYC	1 cut(s)	414
AfaI	GTAC	2 cut(s)	19, 526
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	3 cut(s)	148, 446, 586
AjnI	CCWGG	3 cut(s)	56, 225, 262
AluBI	AGCT	3 cut(s)	202, 319, 503
AluI	AGCT	3 cut(s)	202, 319, 503
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	3 cut(s)	62, 398, 500
ApoI	RAATTY	2 cut(s)	298, 611
ArsI	GACNNNNNNTTYG	4 cut(s)	78, 110, 423, 455
Asp700I	GAANNNNTTC	1 cut(s)	569
AsuHPI	GGTGA	2 cut(s)	16, 542
AvaI	CYCGRG	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	204
BbsI	GAAGAC	2 cut(s)	78, 453
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	49, 385, 512
BccI	CCATC	2 cut(s)	32, 231
BciT130I	CCWGG	3 cut(s)	58, 227, 264
BciVI	GTATCC	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	252
BisI	GCNGC	4 cut(s)	63, 396, 399, 501
BlsI	GCNGC	4 cut(s)	64, 397, 400, 502
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	3 cut(s)	58, 227, 264
BmeT110I	CYCGRG	1 cut(s)	629
BmiI	GGNNCC	2 cut(s)	55, 215
BmrFI	CCNGG	3 cut(s)	58, 227, 264
BmsI	GCATC	2 cut(s)	466, 478
BpiI	GAAGAC	2 cut(s)	78, 453
BsaBI	GATNNNNATC	2 cut(s)	459, 540
BsaHI	GRCGYC	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	57, 226, 263
BsaXI	ACNNNNNCTCC	4 cut(s)	359, 389, 480, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	2 cut(s)	299, 532
Bse8I	GATNNNNATC	2 cut(s)	459, 540
BseBI	CCWGG	3 cut(s)	58, 227, 264
BseDI	CCNNGG	3 cut(s)	57, 226, 263
BseGI	GGATG	3 cut(s)	377, 556, 624
BseJI	GATNNNNATC	2 cut(s)	459, 540
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	146, 151, 536
BseNI	ACTGG	2 cut(s)	299, 532
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	49, 385, 512
BshFI	GGCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	160
BsoBI	CYCGRG	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	360, 454
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	3 cut(s)	147, 150, 537
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	55, 215
BspQI	GCTCTTC	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	299, 532
BssECI	CCNNGG	3 cut(s)	57, 226, 263
BssMI	GATC	2 cut(s)	360, 454
BssNI	GRCGYC	1 cut(s)	414
Bst2UI	CCWGG	3 cut(s)	58, 227, 264
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	2 cut(s)	107, 192
BstACI	GRCGYC	1 cut(s)	414
BstDEI	CTNAG	4 cut(s)	137, 155, 337, 545
BstENI	CCTNNNNNAGG	1 cut(s)	310
BstF5I	GGATG	3 cut(s)	377, 556, 624
BstKTI	GATC	2 cut(s)	363, 457
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	2 cut(s)	360, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 506
BstNI	CCWGG	3 cut(s)	58, 227, 264
BstSCI	CCNGG	3 cut(s)	56, 225, 262
BstV1I	GCAGC	3 cut(s)	49, 385, 512
BstV2I	GAAGAC	2 cut(s)	78, 453
BsuI	GTATCC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	377, 556, 624
BtsIMutI	CAGTG	1 cut(s)	402
CciI	TCATGA	1 cut(s)	472
CseI	GACGC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	18, 525
CviAII	CATG	1 cut(s)	473
CviQI	GTAC	2 cut(s)	18, 525
DdeI	CTNAG	4 cut(s)	137, 155, 337, 545
DpnI	GATC	2 cut(s)	362, 456
DpnII	GATC	2 cut(s)	360, 454
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	2 cut(s)	107, 192
EarI	CTCTTC	2 cut(s)	107, 192
Ecl136II	GAGCTC	1 cut(s)	202
Eco147I	AGGCCT	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	3 cut(s)	65, 131, 525
Eco88I	CYCGRG	1 cut(s)	629
EcoICRI	GAGCTC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	310
EcoRI	GAATTC	2 cut(s)	298, 611
EcoRII	CCWGG	3 cut(s)	56, 225, 262
EcoT38I	GRGCYC	1 cut(s)	204
FaeI	CATG	1 cut(s)	476
FaiI	YATR	3 cut(s)	27, 474, 575
FalI	AAGNNNNNCTT	3 cut(s)	36, 356, 388
FatI	CATG	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	63, 396, 399, 501
FokI	GGATG	3 cut(s)	364, 563, 611
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	4 cut(s)	63, 396, 399, 501
GluI	GCNGC	4 cut(s)	63, 396, 399, 501
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	1 cut(s)	422
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	1 cut(s)	476
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	16, 542
Hpy188I	TCNGA	4 cut(s)	111, 156, 546, 610
Hpy188III	TCNNGA	1 cut(s)	473
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	2 cut(s)	118, 249
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	4 cut(s)	93, 421, 483, 603
HpyCH4V	TGCA	2 cut(s)	65, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 506
HpyF3I	CTNAG	4 cut(s)	137, 155, 337, 545
HpySE526I	ACGT	4 cut(s)	93, 421, 483, 603
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	1 cut(s)	476
Kzo9I	GATC	2 cut(s)	360, 454
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	53, 219
Lsp1109I	GCAGC	3 cut(s)	49, 385, 512
LweI	GCATC	2 cut(s)	466, 478
MaeII	ACGT	4 cut(s)	93, 421, 483, 603
MalI	GATC	2 cut(s)	362, 456
MboI	GATC	2 cut(s)	360, 454
MboII	GAAGA	8 cut(s)	58, 83, 124, 200, 206, 209, 458, 464
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	4 cut(s)	298, 568, 596, 611
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	466
MnlI	CCTC	8 cut(s)	150, 306, 349, 361, 391, 403, 482, 540
MroXI	GAANNNNTTC	1 cut(s)	569
MseI	TTAA	1 cut(s)	308
MslI	CAYNNNNRTG	1 cut(s)	474
MspA1I	CMGCKG	2 cut(s)	398, 503
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	3 cut(s)	58, 227, 264
MvaI	CCWGG	3 cut(s)	58, 227, 264
MwoI	GCNNNNNNNGC	2 cut(s)	62, 506
NdeII	GATC	2 cut(s)	360, 454
NlaIII	CATG	1 cut(s)	476
NlaIV	GGNNCC	2 cut(s)	55, 215
PagI	TCATGA	1 cut(s)	472
PceI	AGGCCT	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PdmI	GAANNNNTTC	1 cut(s)	569
PkrI	GCNGC	4 cut(s)	64, 397, 400, 502
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	3 cut(s)	56, 225, 262
PspGI	CCWGG	3 cut(s)	56, 225, 262
PspN4I	GGNNCC	2 cut(s)	55, 215
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	2 cut(s)	19, 526
RsaNI	GTAC	2 cut(s)	18, 525
RseI	CAYNNNNRTG	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	4 cut(s)	63, 396, 399, 501
Sau3AI	GATC	2 cut(s)	360, 454
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	58, 227, 264
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	2 cut(s)	466, 478
SmiMI	CAYNNNNRTG	1 cut(s)	474
Sse9I	AATT	4 cut(s)	298, 568, 596, 611
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	396
SstI	GAGCTC	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	3 cut(s)	56, 225, 262
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	4 cut(s)	96, 424, 486, 606
TaqI	TCGA	1 cut(s)	600
TasI	AATT	4 cut(s)	298, 568, 596, 611
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	398
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	1 cut(s)	409
TseI	GCWGC	3 cut(s)	62, 398, 500
TspDTI	ATGAA	4 cut(s)	207, 294, 552, 562
TspRI	CASTG	1 cut(s)	409
XagI	CCTNNNNNAGG	1 cut(s)	310
XapI	RAATTY	2 cut(s)	298, 611
XmnI	GAANNNNTTC	1 cut(s)	569
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.