Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

1033420 .. 1035464

Gene Structure 2045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGGAGAAGCAGTACTTACTATGATAAGAATGATGGACTGAAGAAAGGAGCCTGGGCTGCAAGTGAAGACCAGATTGTCAAAGCCTACGTCAAACAACACGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTCAGGTGGTTGAACTATCTGAGGCCTGATATTATCAAAGGCAACATTACAGAAGATGAAGAAGAGCTCATCATCAGGCTCCACAAACTCTTGGGAAACAGATGGTCATTGATAGCCGGAAGGATACCAGGGCGAACTGACAATGAAATCAAAAACTACTGGAATTCGACCTTAAAGAGCAAGCTACAACAAGAAAATCACTTAGAAGTGTCCAAAGATGAGGAGATCAAGGAGGACTTGTCATCCTCTGCCGTTGTTGCCGCTGCTACTGATGAGAACGTCCCACGTTTGACCAAAAACAATGTCATTGAAGACGAAGATCATCATCGTCAGCATCATGCTGCTGACGTTGGAGTTGGAGTTGCAGCTGAAGCAACTAACAATAAGGGTACTGGTGATGATGAATATCTGAGGGCTGACCTTTGGTGGAACAATTTCATAATGGATTTCAATGATACCCAACTCGACATATCTGAATTCCAAAACGACATCCCCGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

211

Amino Acids

24.13

Weight (kDa)

5.3

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	57 - 101	8.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	61 - 110	2.3e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AciI	CCGC	1 cut(s)	393
AcsI	RAATTY	2 cut(s)	295, 608
AcuI	CTGAAG	3 cut(s)	62, 128, 522
AfaI	GTAC	2 cut(s)	16, 523
AgsI	TTSAA	3 cut(s)	145, 443, 583
AjnI	CCWGG	2 cut(s)	53, 259
AluBI	AGCT	3 cut(s)	199, 316, 500
AluI	AGCT	3 cut(s)	199, 316, 500
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	4 cut(s)	59, 395, 473, 497
ApoI	RAATTY	2 cut(s)	295, 608
ArsI	GACNNNNNNTTYG	4 cut(s)	75, 107, 420, 452
Asp700I	GAANNNNTTC	1 cut(s)	566
AsuHPI	GGTGA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	201
BbsI	GAAGAC	2 cut(s)	75, 450
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	4 cut(s)	46, 382, 460, 509
BccI	CCATC	2 cut(s)	29, 228
BceAI	ACGGC	1 cut(s)	368
BciT130I	CCWGG	2 cut(s)	55, 261
BciVI	GTATCC	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	5 cut(s)	60, 393, 396, 474, 498
BlsI	GCNGC	5 cut(s)	61, 394, 397, 475, 499
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	55, 261
BmeT110I	CYCGRG	1 cut(s)	626
BmiI	GGNNCC	2 cut(s)	52, 212
BmrFI	CCNGG	2 cut(s)	55, 261
BmsI	GCATC	1 cut(s)	475
BpiI	GAAGAC	2 cut(s)	75, 450
BsaBI	GATNNNNATC	2 cut(s)	456, 537
BsaJI	CCNNGG	2 cut(s)	54, 260
BsaXI	ACNNNNNCTCC	5 cut(s)	28, 356, 386, 477, 507
Bse1I	ACTGG	2 cut(s)	296, 529
Bse8I	GATNNNNATC	2 cut(s)	456, 537
BseBI	CCWGG	2 cut(s)	55, 261
BseDI	CCNNGG	2 cut(s)	54, 260
BseGI	GGATG	2 cut(s)	374, 621
BseJI	GATNNNNATC	2 cut(s)	456, 537
BseMII	CTCAG	3 cut(s)	143, 148, 533
BseNI	ACTGG	2 cut(s)	296, 529
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	4 cut(s)	46, 382, 460, 509
BshFI	GGCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	357, 451
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	3 cut(s)	144, 147, 534
BspLI	GGNNCC	2 cut(s)	52, 212
BspQI	GCTCTTC	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	296, 529
BssECI	CCNNGG	2 cut(s)	54, 260
BssMI	GATC	2 cut(s)	357, 451
Bst2UI	CCWGG	2 cut(s)	55, 261
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	3 cut(s)	104, 116, 189
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	4 cut(s)	134, 152, 334, 542
BstF5I	GGATG	2 cut(s)	374, 621
BstKTI	GATC	2 cut(s)	360, 454
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	2 cut(s)	357, 451
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 389, 503
BstNI	CCWGG	2 cut(s)	55, 261
BstSCI	CCNGG	2 cut(s)	53, 259
BstV1I	GCAGC	4 cut(s)	46, 382, 460, 509
BstV2I	GAAGAC	2 cut(s)	75, 450
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	374, 621
Cac8I	GCNNGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	15, 522
CviAII	CATG	1 cut(s)	470
CviQI	GTAC	2 cut(s)	15, 522
DdeI	CTNAG	4 cut(s)	134, 152, 334, 542
DpnI	GATC	2 cut(s)	359, 453
DpnII	GATC	2 cut(s)	357, 451
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	104, 116, 189
EarI	CTCTTC	3 cut(s)	104, 116, 189
Ecl136II	GAGCTC	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	3 cut(s)	62, 128, 522
Eco88I	CYCGRG	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	199
EcoRI	GAATTC	2 cut(s)	295, 608
EcoRII	CCWGG	2 cut(s)	53, 259
EcoT38I	GRGCYC	1 cut(s)	201
FaeI	CATG	1 cut(s)	473
FaiI	YATR	4 cut(s)	24, 471, 572, 602
FalI	AAGNNNNNCTT	3 cut(s)	33, 353, 385
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	1 cut(s)	469
Fnu4HI	GCNGC	5 cut(s)	60, 393, 396, 474, 498
FokI	GGATG	2 cut(s)	361, 608
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	5 cut(s)	60, 393, 396, 474, 498
GluI	GCNGC	5 cut(s)	60, 393, 396, 474, 498
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	1 cut(s)	473
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	1 cut(s)	539
Hpy188I	TCNGA	4 cut(s)	108, 153, 543, 607
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	4 cut(s)	90, 411, 418, 480
HpyCH4V	TGCA	2 cut(s)	62, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 389, 503
HpyF3I	CTNAG	4 cut(s)	134, 152, 334, 542
HpySE526I	ACGT	4 cut(s)	90, 411, 418, 480
Hsp92II	CATG	1 cut(s)	473
Kzo9I	GATC	2 cut(s)	357, 451
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	2 cut(s)	50, 216
Lsp1109I	GCAGC	4 cut(s)	46, 382, 460, 509
LweI	GCATC	1 cut(s)	475
MaeII	ACGT	4 cut(s)	90, 411, 418, 480
MalI	GATC	2 cut(s)	359, 453
MboI	GATC	2 cut(s)	357, 451
MboII	GAAGA	9 cut(s)	55, 80, 121, 133, 197, 203, 206, 455, 461
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	3 cut(s)	295, 565, 608
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	2 cut(s)	463, 469
MnlI	CCTC	5 cut(s)	147, 346, 358, 388, 537
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	2 cut(s)	305, 634
MspA1I	CMGCKG	2 cut(s)	395, 500
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	2 cut(s)	55, 261
MvaI	CCWGG	2 cut(s)	55, 261
MwoI	GCNNNNNNNGC	3 cut(s)	59, 389, 503
NdeII	GATC	2 cut(s)	357, 451
NlaIII	CATG	1 cut(s)	473
NlaIV	GGNNCC	2 cut(s)	52, 212
PceI	AGGCCT	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PdmI	GAANNNNTTC	1 cut(s)	566
PkrI	GCNGC	5 cut(s)	61, 394, 397, 475, 499
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	53, 259
PspGI	CCWGG	2 cut(s)	53, 259
PspN4I	GGNNCC	2 cut(s)	52, 212
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	2 cut(s)	16, 523
RsaNI	GTAC	2 cut(s)	15, 522
SacI	GAGCTC	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	305, 634
SatI	GCNGC	5 cut(s)	60, 393, 396, 474, 498
Sau3AI	GATC	2 cut(s)	357, 451
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	55, 261
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	1 cut(s)	475
Sse9I	AATT	3 cut(s)	295, 565, 608
SseBI	AGGCCT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	393
SstI	GAGCTC	1 cut(s)	201
StuI	AGGCCT	1 cut(s)	157
StyD4I	CCNGG	2 cut(s)	53, 259
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	4 cut(s)	93, 414, 421, 483
TaqI	TCGA	2 cut(s)	299, 597
TasI	AATT	3 cut(s)	295, 565, 608
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	395
Tru1I	TTAA	2 cut(s)	305, 634
Tru9I	TTAA	2 cut(s)	305, 634
TseI	GCWGC	4 cut(s)	59, 395, 473, 497
TspDTI	ATGAA	4 cut(s)	204, 291, 549, 559
XapI	RAATTY	2 cut(s)	295, 608
XmnI	GAANNNNTTC	1 cut(s)	566
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.