Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

57338151 .. 57339645

Gene Structure 1495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G034830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGGGGAAAGCAGTACGTGCTATGATAAGAACGAGGGACCGAAGAAAGGAGTCTGGGCTGCAAGTGAAGACCAGATTGTCAGAGACTACGTCAAAAAACATGGTGTGGGAAAATGGGGCAAATTATCTAGGGAAACAGGTCTGAAGAGATGTGGGAAGAGTGTGAGGCTTAGGTGGCTGAATTTTCTGAGGCCTGGTATCGTTAGAGGCAACATTACAGAAGATGAAGAAGAGCTCATCATCAGACTCCACAAACTCTTGGGCAACAGATGGTCACTGATAGCCGGAAGGATACCAGGGCGAACTGATAATGAAATAAAAAACTACTGGAATTCCCGCTTAAAGAGGAAGCTACAACAACAAAACCACTTGGAAGTGCCGGAAGTGCCTAGAAATAAGGAGATCAGGGAGGACTTGTCATCCTCTGCTGCGGTTGCCGCCGCCGCTGAGAAGAACCCACATTTGACCGGAAACAATGTCAATGAAGACGAAGATTATCATCAGCATCATGATGTTGACTTTGGAGTTGGAATTGAGTTTGAAGCAACTGATAATAATAACGGCACTGGTGATGATGAACATCTGAGGGATGACCTTTGGTGGAACAACTTCATAATGGATCTGAATGATATCCAACTCGATGCATCTGAATTTCAACCCGACTTCCCCGAGATTAGGCTAGGGAATCTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

231

Amino Acids

26.58

Weight (kDa)

5.67

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	5e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 78	1.4e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 113	8.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 122	1.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AciI	CCGC	5 cut(s)	337, 431, 438, 441, 444
AclWI	GGATC	1 cut(s)	627
AcsI	RAATTY	3 cut(s)	181, 331, 650
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	47, 675
AgsI	TTSAA	2 cut(s)	542, 656
AjnI	CCWGG	2 cut(s)	193, 295
AluBI	AGCT	2 cut(s)	235, 352
AluI	AGCT	2 cut(s)	235, 352
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	627
Ama87I	CYCGRG	1 cut(s)	668
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	59, 428
ApoI	RAATTY	3 cut(s)	181, 331, 650
Asp700I	GAANNNNTTC	1 cut(s)	608
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	581
AvaI	CYCGRG	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	75, 492
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	46, 415
BccI	CCATC	1 cut(s)	264
BceAI	ACGGC	1 cut(s)	577
BciT130I	CCWGG	2 cut(s)	195, 297
BciVI	GTATCC	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	3 cut(s)	129, 390, 680
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	5 cut(s)	60, 429, 438, 441, 444
BlsI	GCNGC	5 cut(s)	61, 430, 439, 442, 445
Bme1390I	CCNGG	2 cut(s)	195, 297
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	668
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	2 cut(s)	195, 297
BmsI	GCATC	3 cut(s)	514, 631, 653
BpiI	GAAGAC	2 cut(s)	75, 492
Bpu10I	CCTNAGC	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	18
BsaBI	GATNNNNATC	2 cut(s)	498, 579
BsaJI	CCNNGG	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 675
Bse1I	ACTGG	2 cut(s)	332, 571
Bse8I	GATNNNNATC	2 cut(s)	498, 579
BseBI	CCWGG	2 cut(s)	195, 297
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	2 cut(s)	419, 595
BseJI	GATNNNNATC	2 cut(s)	498, 579
BseLI	CCNNNNNNNGG	2 cut(s)	47, 675
BseMII	CTCAG	3 cut(s)	179, 438, 575
BseNI	ACTGG	2 cut(s)	332, 571
BseXI	GCAGC	2 cut(s)	46, 415
BshFI	GGCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	668
BsiSI	CCGG	3 cut(s)	285, 380, 468
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	47, 675
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	668
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	402, 619
BspACI	CCGC	5 cut(s)	337, 431, 438, 441, 444
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	3 cut(s)	180, 439, 576
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	627
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	332, 571
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	2 cut(s)	402, 619
Bst2UI	CCWGG	2 cut(s)	195, 297
Bst6I	CTCTTC	3 cut(s)	140, 152, 225
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	18
BstDEI	CTNAG	5 cut(s)	170, 188, 447, 584, 689
BstF5I	GGATG	2 cut(s)	419, 595
BstKTI	GATC	2 cut(s)	405, 622
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	2 cut(s)	402, 619
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 175, 385, 434, 437, 443
BstNI	CCWGG	2 cut(s)	195, 297
BstSCI	CCNGG	2 cut(s)	193, 295
BstV1I	GCAGC	2 cut(s)	46, 415
BstV2I	GAAGAC	2 cut(s)	75, 492
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	419, 595
BtsIMutI	CAGTG	2 cut(s)	275, 564
CciI	TCATGA	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	2 cut(s)	101, 509
CviJI	RGCY	8 cut(s)	59, 169, 178, 193, 235, 284, 352, 679
CviKI_1	RGCY	8 cut(s)	59, 169, 178, 193, 235, 284, 352, 679
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	5 cut(s)	170, 188, 447, 584, 689
DpnI	GATC	2 cut(s)	404, 621
DpnII	GATC	2 cut(s)	402, 619
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	140, 152, 225
EarI	CTCTTC	3 cut(s)	140, 152, 225
Ecl136II	GAGCTC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	668
EcoICRI	GAGCTC	1 cut(s)	235
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	193, 295
EcoRV	GATATC	1 cut(s)	631
EcoT22I	ATGCAT	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	2 cut(s)	104, 512
FaiI	YATR	4 cut(s)	24, 102, 510, 614
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	2 cut(s)	100, 508
FauI	CCCGC	1 cut(s)	344
Fnu4HI	GCNGC	5 cut(s)	60, 429, 438, 441, 444
FokI	GGATG	2 cut(s)	406, 602
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	5 cut(s)	60, 429, 438, 441, 444
FspBI	CTAG	3 cut(s)	129, 390, 680
GluI	GCNGC	5 cut(s)	60, 429, 438, 441, 444
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	3 cut(s)	285, 380, 468
Hin1II	CATG	2 cut(s)	104, 512
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	3 cut(s)	51, 246, 685
HpaII	CCGG	3 cut(s)	285, 380, 468
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	7 cut(s)	83, 144, 189, 245, 585, 624, 649
Hpy188III	TCNNGA	1 cut(s)	509
Hpy8I	GTNNAC	1 cut(s)	517
HpyAV	CCTTC	1 cut(s)	282
HpyCH4IV	ACGT	2 cut(s)	17, 90
HpyCH4V	TGCA	2 cut(s)	62, 644
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 175, 385, 434, 437, 443
HpyF3I	CTNAG	5 cut(s)	170, 188, 447, 584, 689
HpySE526I	ACGT	2 cut(s)	17, 90
Hsp92II	CATG	2 cut(s)	104, 512
Kzo9I	GATC	2 cut(s)	402, 619
LguI	GCTCTTC	1 cut(s)	225
Lsp1109I	GCAGC	2 cut(s)	46, 415
LweI	GCATC	3 cut(s)	514, 631, 653
MaeI	CTAG	3 cut(s)	129, 390, 680
MaeII	ACGT	2 cut(s)	17, 90
MaeIII	GTNAC	1 cut(s)	273
MalI	GATC	2 cut(s)	404, 621
MboI	GATC	2 cut(s)	402, 619
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	5 cut(s)	122, 181, 331, 531, 650
MlyI	GAGTC	2 cut(s)	60, 240
MmeI	TCCRAC	2 cut(s)	508, 658
MnlI	CCTC	8 cut(s)	28, 159, 183, 200, 339, 403, 433, 579
Mph1103I	ATGCAT	1 cut(s)	646
MroXI	GAANNNNTTC	1 cut(s)	608
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	3 cut(s)	285, 380, 468
MspR9I	CCNGG	2 cut(s)	195, 297
MvaI	CCWGG	2 cut(s)	195, 297
MwoI	GCNNNNNNNGC	6 cut(s)	18, 175, 385, 434, 437, 443
NdeII	GATC	2 cut(s)	402, 619
NlaIII	CATG	2 cut(s)	104, 512
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	646
PagI	TCATGA	1 cut(s)	508
PceI	AGGCCT	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	685
PflFI	GACNNNGTC	1 cut(s)	89
PkrI	GCNGC	5 cut(s)	61, 430, 439, 442, 445
PleI	GAGTC	2 cut(s)	59, 240
PpsI	GAGTC	2 cut(s)	59, 240
Ppu21I	YACGTR	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	193, 295
PspGI	CCWGG	2 cut(s)	193, 295
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	619
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	510
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	5 cut(s)	60, 429, 438, 441, 444
Sau3AI	GATC	2 cut(s)	402, 619
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	2 cut(s)	60, 240
ScrFI	CCNGG	2 cut(s)	195, 297
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	8 cut(s)	20, 93, 142, 176, 237, 354, 597, 695
SfaNI	GCATC	3 cut(s)	514, 631, 653
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	510
Sse9I	AATT	5 cut(s)	122, 181, 331, 531, 650
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	5 cut(s)	337, 431, 438, 441, 444
SspMI	CTAG	3 cut(s)	129, 390, 680
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	2 cut(s)	193, 295
TaiI	ACGT	2 cut(s)	20, 93
TaqI	TCGA	1 cut(s)	639
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	5 cut(s)	122, 181, 331, 531, 650
TauI	GCSGC	3 cut(s)	440, 443, 446
TfiI	GAWTC	1 cut(s)	685
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	2 cut(s)	282, 571
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	2 cut(s)	59, 428
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	5 cut(s)	240, 327, 498, 591, 601
TspRI	CASTG	2 cut(s)	282, 571
Tth111I	GACNNNGTC	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	3 cut(s)	181, 331, 650
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	3 cut(s)	129, 390, 680
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.