Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Forward (+)

71226653 .. 71227846

Gene Structure 1194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG518600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGGAGAAGCAGTACTTACTATGATAAGAATGATGGACTGAAGAAAGGAGCCTGGGCTGCAAGTGAAGACCAGATTGTCAAAGCCTACGTCAAAAAACACGGTGTCGGAAAATGGGGCAAACTATCCAGGGAAACAGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTCAGATGGTTGAACTATCTGAGGCCTGATATTATCAAAGGCAACATTACAGAAGATGAAGAAGAGCTCATCATCAGGCTCCACAAACTCTTGGGAAACAGATGGTCATTGATAGCCGGAAGGATACCAGGGCGAACTGACAATGAAATCAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTACAACAAGAAAATCACTTAGAAGTGTCTAAAGATGAGGAGATCAAGGAGGACTTGTCATCCTCTGCCGTTGTTGCCGCTGCCACTGATGAGGACGAAGATCATCATCGTCAGCATCATGATGCTGACGTTGGAATTAGAGTTGCAGCTGAAGCAACTAACTATAAGGGTACTGGTGATGATGAATATCTGAGGGATGACCTTTGGTGGAACTTCATAATGGATTTCAATGATACCCAACTCGACGTATCTGAATTCCAAAACGGCATCCCCGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

210

Amino Acids

24.18

Weight (kDa)

5.69

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	4e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 77	3.6e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 113	8.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 122	4.3e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AciI	CCGC	1 cut(s)	429
AcsI	RAATTY	2 cut(s)	331, 605
AcuI	CTGAAG	3 cut(s)	62, 164, 522
AfaI	GTAC	2 cut(s)	16, 523
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	181, 580
AjnI	CCWGG	3 cut(s)	53, 128, 295
AluBI	AGCT	3 cut(s)	235, 352, 500
AluI	AGCT	3 cut(s)	235, 352, 500
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	3 cut(s)	59, 431, 497
ApoI	RAATTY	2 cut(s)	331, 605
ArsI	GACNNNNNNTTYG	2 cut(s)	75, 107
AsuHPI	GGTGA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	623
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	46, 418, 509
BccI	CCATC	3 cut(s)	29, 168, 264
BceAI	ACGGC	2 cut(s)	404, 631
BciT130I	CCWGG	3 cut(s)	55, 130, 297
BciVI	GTATCC	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	160
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	4 cut(s)	60, 429, 432, 498
BlsI	GCNGC	4 cut(s)	61, 430, 433, 499
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	3 cut(s)	55, 130, 297
BmeT110I	CYCGRG	1 cut(s)	623
BmiI	GGNNCC	2 cut(s)	52, 248
BmrFI	CCNGG	3 cut(s)	55, 130, 297
BmsI	GCATC	3 cut(s)	463, 475, 627
BpiI	GAAGAC	1 cut(s)	75
BsaBI	GATNNNNATC	2 cut(s)	456, 537
BsaJI	CCNNGG	3 cut(s)	54, 129, 296
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 392, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	332, 529
Bse8I	GATNNNNATC	2 cut(s)	456, 537
BseBI	CCWGG	3 cut(s)	55, 130, 297
BseDI	CCNNGG	3 cut(s)	54, 129, 296
BseGI	GGATG	3 cut(s)	410, 553, 618
BseJI	GATNNNNATC	2 cut(s)	456, 537
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	3 cut(s)	179, 184, 533
BseNI	ACTGG	2 cut(s)	332, 529
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	3 cut(s)	46, 418, 509
BshFI	GGCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	393, 451
BspACI	CCGC	1 cut(s)	429
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	3 cut(s)	180, 183, 534
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	52, 248
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	332, 529
BssECI	CCNNGG	3 cut(s)	54, 129, 296
BssMI	GATC	2 cut(s)	393, 451
Bst2UI	CCWGG	3 cut(s)	55, 130, 297
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	3 cut(s)	140, 152, 225
BstDEI	CTNAG	4 cut(s)	170, 188, 370, 542
BstENI	CCTNNNNNAGG	1 cut(s)	343
BstF5I	GGATG	3 cut(s)	410, 553, 618
BstKTI	GATC	2 cut(s)	396, 454
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	393, 451
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 425, 503
BstNI	CCWGG	3 cut(s)	55, 130, 297
BstSCI	CCNGG	3 cut(s)	53, 128, 295
BstV1I	GCAGC	3 cut(s)	46, 418, 509
BstV2I	GAAGAC	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	410, 553, 618
BtsIMutI	CAGTG	1 cut(s)	435
CciI	TCATGA	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	15, 522
CviAII	CATG	1 cut(s)	470
CviJI	RGCY	9 cut(s)	53, 59, 86, 193, 235, 247, 284, 352, 500
CviKI_1	RGCY	9 cut(s)	53, 59, 86, 193, 235, 247, 284, 352, 500
CviQI	GTAC	2 cut(s)	15, 522
DdeI	CTNAG	4 cut(s)	170, 188, 370, 542
DpnI	GATC	2 cut(s)	395, 453
DpnII	GATC	2 cut(s)	393, 451
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	140, 152, 225
EarI	CTCTTC	3 cut(s)	140, 152, 225
Ecl136II	GAGCTC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	3 cut(s)	62, 164, 522
Eco88I	CYCGRG	1 cut(s)	623
EcoICRI	GAGCTC	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	343
EcoRI	GAATTC	2 cut(s)	331, 605
EcoRII	CCWGG	3 cut(s)	53, 128, 295
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	1 cut(s)	473
FaiI	YATR	4 cut(s)	24, 471, 516, 569
FalI	AAGNNNNNCTT	3 cut(s)	33, 389, 421
FatI	CATG	1 cut(s)	469
Fnu4HI	GCNGC	4 cut(s)	60, 429, 432, 498
FokI	GGATG	3 cut(s)	397, 560, 605
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	4 cut(s)	60, 429, 432, 498
GluI	GCNGC	4 cut(s)	60, 429, 432, 498
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	1 cut(s)	473
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	539
Hpy188I	TCNGA	6 cut(s)	110, 144, 173, 189, 543, 604
Hpy188III	TCNNGA	1 cut(s)	470
Hpy99I	CGWCG	1 cut(s)	599
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	3 cut(s)	90, 480, 597
HpyCH4V	TGCA	2 cut(s)	62, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 425, 503
HpyF3I	CTNAG	4 cut(s)	170, 188, 370, 542
HpySE526I	ACGT	3 cut(s)	90, 480, 597
Hsp92II	CATG	1 cut(s)	473
Kzo9I	GATC	2 cut(s)	393, 451
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	2 cut(s)	50, 252
Lsp1109I	GCAGC	3 cut(s)	46, 418, 509
LweI	GCATC	3 cut(s)	463, 475, 627
MaeII	ACGT	3 cut(s)	90, 480, 597
MalI	GATC	2 cut(s)	395, 453
MboI	GATC	2 cut(s)	393, 451
MboII	GAAGA	8 cut(s)	55, 80, 157, 169, 233, 239, 242, 461
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	331, 486, 605
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	2 cut(s)	88, 463
MnlI	CCTC	7 cut(s)	183, 339, 382, 394, 424, 436, 537
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	471
MspA1I	CMGCKG	2 cut(s)	431, 500
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	3 cut(s)	55, 130, 297
MvaI	CCWGG	3 cut(s)	55, 130, 297
MwoI	GCNNNNNNNGC	3 cut(s)	59, 425, 503
NdeII	GATC	2 cut(s)	393, 451
NlaIII	CATG	1 cut(s)	473
NlaIV	GGNNCC	2 cut(s)	52, 248
PagI	TCATGA	1 cut(s)	469
PceI	AGGCCT	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	621
PkrI	GCNGC	4 cut(s)	61, 430, 433, 499
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	3 cut(s)	53, 128, 295
PspGI	CCWGG	3 cut(s)	53, 128, 295
PspN4I	GGNNCC	2 cut(s)	52, 248
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	2 cut(s)	16, 523
RsaNI	GTAC	2 cut(s)	15, 522
RseI	CAYNNNNRTG	1 cut(s)	471
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	4 cut(s)	60, 429, 432, 498
Sau3AI	GATC	2 cut(s)	393, 451
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	3 cut(s)	55, 130, 297
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	9 cut(s)	93, 142, 237, 341, 354, 483, 502, 555, 600
SfaNI	GCATC	3 cut(s)	463, 475, 627
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	3 cut(s)	331, 486, 605
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	1 cut(s)	429
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	3 cut(s)	53, 128, 295
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	3 cut(s)	93, 483, 600
TaqI	TCGA	1 cut(s)	594
TasI	AATT	3 cut(s)	331, 486, 605
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	431
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	3 cut(s)	59, 431, 497
TspDTI	ATGAA	4 cut(s)	240, 327, 549, 556
TspRI	CASTG	1 cut(s)	442
XagI	CCTNNNNNAGG	1 cut(s)	343
XapI	RAATTY	2 cut(s)	331, 605
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.