Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

33635742 .. 33637483

Gene Structure 1742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG305200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGGGAAAGCAGTACTTACTATGATAAGAATGATGGACTGAAGAAAGGAGCCTGGGCTGCAAGTGAAGACCAGATTGTTAAAGACTACATCGAAAAACACGGTGTCGGAAAATGGGGCAAACTATCTAGGGAAACAGGTCTGAAGAGATGTGCGAAGAGTGTGAGACTTAGGTGGCTGAACTATCTGAGGCCTGATATCATCAGAGGCAACATTAAAGAAGATGAAGAAGAGCTCATCATCAGGCTCCACAAACTCTTGGGAAACAGATGGTCATTGATAGCTGGAAGGATACCAGGGCGAACTGACAATGAAATCAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTACAACAAGAAAATCACTTAGAAGTGTTTAAATATGAGGAGATCAAGGAGGACTGGTCATCCTCTGCCGTTGTTGCTGCTGCTGCTGATGAGGAAAACCCAGGTTTGACCAAAAAGAATGTCACTGAAGTTGGAGTTGGAGTTGGAGTTGAAGCAACTAATAATAACGGTATTGGTGATGATGAATATCTGAGGGATGACCTTTGGTGGAACAATTTCATAGTGGATTTCAATGATACCCAACTCGACGTATCTGACTTCCAAACCGACTTCCCCGAGAATTGGGAATCTAAGGCGAACATTATCGACGTCGGAGATTGCTGCACCGATCAACAAGACATGCCAAATAATATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

236

Amino Acids

27.01

Weight (kDa)

4.84

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	6.7e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 78	1e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 113	1.4e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 122	3.6e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	3 cut(s)	62, 164, 498
AcyI	GRCGYC	1 cut(s)	660
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	345, 633
AgsI	TTSAA	2 cut(s)	503, 583
AjnI	CCWGG	3 cut(s)	53, 295, 451
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AluBI	AGCT	3 cut(s)	235, 284, 352
AluI	AGCT	3 cut(s)	235, 284, 352
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	5 cut(s)	59, 428, 431, 434, 672
ApoI	RAATTY	1 cut(s)	331
ArsI	GACNNNNNNTTYG	2 cut(s)	456, 488
Asp700I	GAANNNNTTC	1 cut(s)	566
AsuHPI	GGTGA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	5 cut(s)	46, 415, 418, 421, 659
BccI	CCATC	2 cut(s)	29, 264
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	3 cut(s)	55, 297, 453
BciVI	GTATCC	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	5 cut(s)	60, 429, 432, 435, 673
BlsI	GCNGC	5 cut(s)	61, 430, 433, 436, 674
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	3 cut(s)	55, 297, 453
BmeT110I	CYCGRG	1 cut(s)	626
BmiI	GGNNCC	2 cut(s)	52, 248
BmrFI	CCNGG	3 cut(s)	55, 297, 453
BpiI	GAAGAC	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	660
BsaJI	CCNNGG	3 cut(s)	54, 296, 451
BsaXI	ACNNNNNCTCC	6 cut(s)	392, 422, 477, 483, 507, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 633
Bse1I	ACTGG	2 cut(s)	332, 410
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	3 cut(s)	55, 297, 453
BseDI	CCNNGG	3 cut(s)	54, 296, 451
BseGI	GGATG	2 cut(s)	410, 553
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	2 cut(s)	345, 633
BseMII	CTCAG	2 cut(s)	179, 533
BseNI	ACTGG	2 cut(s)	332, 410
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	5 cut(s)	46, 415, 418, 421, 659
BsgI	GTGCAG	1 cut(s)	658
BshFI	GGCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	626
BslI	CCNNNNNNNGG	2 cut(s)	345, 633
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	393, 679
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	2 cut(s)	180, 534
BspLI	GGNNCC	2 cut(s)	52, 248
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	332, 410
BssECI	CCNNGG	3 cut(s)	54, 296, 451
BssMI	GATC	2 cut(s)	393, 679
BssNI	GRCGYC	1 cut(s)	660
Bst2UI	CCWGG	3 cut(s)	55, 297, 453
Bst4CI	ACNGT	2 cut(s)	104, 521
Bst6I	CTCTTC	3 cut(s)	140, 152, 225
BstACI	GRCGYC	1 cut(s)	660
BstDEI	CTNAG	5 cut(s)	170, 188, 370, 542, 642
BstENI	CCTNNNNNAGG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	410, 553
BstKTI	GATC	2 cut(s)	396, 682
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	393, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 425, 434
BstNI	CCWGG	3 cut(s)	55, 297, 453
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	3 cut(s)	53, 295, 451
BstV1I	GCAGC	5 cut(s)	46, 415, 418, 421, 659
BstV2I	GAAGAC	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	410, 553
BtsIMutI	CAGTG	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	1 cut(s)	691
CviJI	RGCY	8 cut(s)	53, 59, 178, 193, 235, 247, 284, 352
CviKI_1	RGCY	8 cut(s)	53, 59, 178, 193, 235, 247, 284, 352
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	5 cut(s)	170, 188, 370, 542, 642
DpnI	GATC	2 cut(s)	395, 681
DpnII	GATC	2 cut(s)	393, 679
DraI	TTTAAA	1 cut(s)	382
Eam1104I	CTCTTC	3 cut(s)	140, 152, 225
EarI	CTCTTC	3 cut(s)	140, 152, 225
Ecl136II	GAGCTC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	3 cut(s)	62, 164, 498
Eco88I	CYCGRG	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	3 cut(s)	53, 295, 451
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	1 cut(s)	694
FaiI	YATR	4 cut(s)	24, 387, 572, 692
FalI	AAGNNNNNCTT	1 cut(s)	33
FatI	CATG	1 cut(s)	690
Fnu4HI	GCNGC	5 cut(s)	60, 429, 432, 435, 673
FokI	GGATG	2 cut(s)	397, 560
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	5 cut(s)	60, 429, 432, 435, 673
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	5 cut(s)	60, 429, 432, 435, 673
HaeIII	GGCC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	660
Hin1II	CATG	1 cut(s)	694
HinfI	GANTC	1 cut(s)	638
HphI	GGTGA	1 cut(s)	539
Hpy188I	TCNGA	7 cut(s)	110, 144, 189, 206, 543, 607, 665
Hpy99I	CGWCG	3 cut(s)	602, 662, 665
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	2 cut(s)	104, 521
HpyCH4IV	ACGT	2 cut(s)	600, 660
HpyCH4V	TGCA	2 cut(s)	62, 675
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 425, 434
HpyF3I	CTNAG	5 cut(s)	170, 188, 370, 542, 642
HpySE526I	ACGT	2 cut(s)	600, 660
Hsp92I	GRCGYC	1 cut(s)	660
Hsp92II	CATG	1 cut(s)	694
Kzo9I	GATC	2 cut(s)	393, 679
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	2 cut(s)	50, 252
Lsp1109I	GCAGC	5 cut(s)	46, 415, 418, 421, 659
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	2 cut(s)	600, 660
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	2 cut(s)	395, 681
MboI	GATC	2 cut(s)	393, 679
MboII	GAAGA	7 cut(s)	55, 80, 157, 169, 233, 239, 242
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	331, 565, 631
MmeI	TCCRAC	5 cut(s)	88, 463, 469, 475, 643
MnlI	CCTC	8 cut(s)	183, 200, 339, 382, 394, 424, 436, 537
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	4 cut(s)	81, 216, 341, 381
MspR9I	CCNGG	3 cut(s)	55, 297, 453
MvaI	CCWGG	3 cut(s)	55, 297, 453
MwoI	GCNNNNNNNGC	3 cut(s)	59, 425, 434
NdeII	GATC	2 cut(s)	393, 679
NlaIII	CATG	1 cut(s)	694
NlaIV	GGNNCC	2 cut(s)	52, 248
NmuCI	GTSAC	1 cut(s)	472
NspI	RCATGY	1 cut(s)	694
PceI	AGGCCT	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	1 cut(s)	638
PkrI	GCNGC	5 cut(s)	61, 430, 433, 436, 674
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	3 cut(s)	53, 295, 451
PspGI	CCWGG	3 cut(s)	53, 295, 451
PspN4I	GGNNCC	2 cut(s)	52, 248
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	4 cut(s)	81, 216, 341, 381
SatI	GCNGC	5 cut(s)	60, 429, 432, 435, 673
Sau3AI	GATC	2 cut(s)	393, 679
ScaI	AGTACT	1 cut(s)	16
ScrFI	CCNGG	3 cut(s)	55, 297, 453
SduI	GDGCHC	1 cut(s)	237
Sse9I	AATT	3 cut(s)	331, 565, 631
SseBI	AGGCCT	1 cut(s)	193
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	3 cut(s)	53, 295, 451
TaaI	ACNGT	2 cut(s)	104, 521
TaiI	ACGT	2 cut(s)	603, 663
TaqI	TCGA	3 cut(s)	93, 597, 657
TasI	AATT	3 cut(s)	331, 565, 631
TatI	WGTACW	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	638
Tru1I	TTAA	4 cut(s)	81, 216, 341, 381
Tru9I	TTAA	4 cut(s)	81, 216, 341, 381
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	5 cut(s)	59, 428, 431, 434, 672
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	4 cut(s)	240, 327, 549, 559
TspRI	CASTG	1 cut(s)	481
XagI	CCTNNNNNAGG	1 cut(s)	343
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	694
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	1 cut(s)	129
ZraI	GACGTC	1 cut(s)	661
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.