Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

47584136 .. 47584924

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0373000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAGTTACCAGTGGGGAATAAGTTTCGCCATTTGACCATAACATCTGCTCCCGAAGGTCCATTTCCCGTTTCTTCTGACACTTGCAAGAGTTTAAGGACCCTCGCGACTTTTACTTGTGAAATTACTAGTATTAACCCAGAGTTTGTTTTACAATTAAAATGCGTGAGGACCTTGAATTTGAGTGACAATGGTATGGAAAATCTTCCAAACGAGGTTGGCGGGTTGGTGCACCGGCGGTATTTGGATCTATCTAACAACAAATGGAAGAAATTACCCGACATTGTGTGCAATTTGATCAATTTGGAAACCTTGAGACTTGGAGGCTGCAGAGGTCTTGTAGAGTTACCCGAGGCCATGGGAATGCTGACCAACTTGCGGCATCTCCATGTTAAGGATAGTCATGATGTGAAGTGGCCAAAATCAATTGCGAAGCTAACGATGAATGATGCCGCCAAGAGTGATGCGGAGAAAGCAAAATTTGTCAAGAAGAAACACCTTGTTTATTTGAACCTAAGTTTCCAGAATCAGGCAAGCGAGAGTATCATCCAGGAAGAAATACTGAATGCCTTACAGCCCAATCCAATTTTGGAATCTTTAGAGATCGGATATTACAGTATGTGGCACCACATTGTGCCCCAGCTGGATGAACATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

219

Amino Acids

24.8

Weight (kDa)

6.79

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	32 - 202	5.1e-17	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	151 - 205	1e-08	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	624
AccII	CGCG	1 cut(s)	107
AciI	CCGC	5 cut(s)	222, 238, 379, 453, 467
AclWI	GGATC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	416
AcsI	RAATTY	2 cut(s)	178, 479
AdeI	CACNNNGTG	1 cut(s)	634
AfiI	CCNNNNNNNGG	3 cut(s)	378, 394, 529
AgsI	TTSAA	2 cut(s)	178, 511
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	2 cut(s)	436, 643
AluI	AGCT	2 cut(s)	436, 643
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	310
Alw44I	GTGCAC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	255
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	354, 416
ApaLI	GTGCAC	1 cut(s)	230
ApeKI	GCWGC	1 cut(s)	327
ApoI	RAATTY	2 cut(s)	178, 479
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
Asp700I	GAANNNNTTC	1 cut(s)	204
AspS9I	GGNCC	3 cut(s)	59, 99, 171
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	3 cut(s)	59, 99, 171
BaeGI	GKGCMC	2 cut(s)	234, 639
BalI	TGGCCA	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	624
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	551
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	310
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	328
BisI	GCNGC	3 cut(s)	328, 380, 453
BlsI	GCNGC	3 cut(s)	329, 381, 454
Bme1390I	CCNGG	1 cut(s)	551
Bme18I	GGWCC	3 cut(s)	59, 99, 171
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	3 cut(s)	59, 99, 171
BmiI	GGNNCC	2 cut(s)	101, 626
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	3 cut(s)	391, 439, 454
BpuEI	CTTGAG	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	651
BsaJI	CCNNGG	2 cut(s)	351, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	3 cut(s)	378, 394, 529
Bse118I	RCCGGY	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	651
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	2 cut(s)	351, 357
BseGI	GGATG	2 cut(s)	546, 652
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	3 cut(s)	378, 394, 529
BseNI	ACTGG	1 cut(s)	11
BseSI	GKGCMC	2 cut(s)	234, 639
BseXI	GCAGC	1 cut(s)	314
BseYI	CCCAGC	1 cut(s)	639
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	356, 418
BshNI	GGYRCC	1 cut(s)	624
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	235
BslI	CCNNNNNNNGG	3 cut(s)	378, 394, 529
BsmAI	GTCTC	1 cut(s)	310
BsmI	GAATGC	2 cut(s)	369, 571
BsnI	GGCC	2 cut(s)	356, 418
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	234, 639
Bsp143I	GATC	3 cut(s)	247, 297, 603
Bsp19I	CCATGG	1 cut(s)	357
Bsp68I	TCGCGA	1 cut(s)	107
BspACI	CCGC	5 cut(s)	222, 238, 379, 453, 467
BspANI	GGCC	2 cut(s)	356, 418
BspFNI	CGCG	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	101, 626
BspMAI	CTGCAG	1 cut(s)	332
BspPI	GGATC	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	351, 357
BssMI	GATC	3 cut(s)	247, 297, 603
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	1 cut(s)	617
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	1 cut(s)	515
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	546, 652
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	3 cut(s)	250, 300, 606
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	3 cut(s)	247, 297, 603
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	1 cut(s)	328
BstSLI	GKGCMC	2 cut(s)	234, 639
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	356, 418
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	546, 652
BtsIMutI	CAGTG	1 cut(s)	18
BtuMI	TCGCGA	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	535
CciI	TCATGA	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	3 cut(s)	59, 99, 171
CviAII	CATG	3 cut(s)	358, 389, 404
CviJI	RGCY	6 cut(s)	327, 356, 418, 436, 577, 643
CviKI_1	RGCY	6 cut(s)	327, 356, 418, 436, 577, 643
DdeI	CTNAG	1 cut(s)	515
DpnI	GATC	3 cut(s)	249, 299, 605
DpnII	GATC	3 cut(s)	247, 297, 603
DraIII	CACNNNGTG	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	416
Eco130I	CCWWGG	1 cut(s)	357
Eco47I	GGWCC	3 cut(s)	59, 99, 171
Eco88I	CYCGRG	1 cut(s)	350
EcoO109I	RGGNCCY	2 cut(s)	99, 171
EcoRII	CCWGG	1 cut(s)	549
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	3 cut(s)	361, 392, 407
FaiI	YATR	6 cut(s)	41, 197, 359, 390, 405, 620
FatI	CATG	3 cut(s)	357, 388, 403
FauI	CCCGC	1 cut(s)	215
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	328, 380, 453
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	3 cut(s)	328, 380, 453
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	3 cut(s)	328, 380, 453
GsaI	CCCAGC	1 cut(s)	643
HaeIII	GGCC	2 cut(s)	356, 418
HapII	CCGG	1 cut(s)	235
Hin1II	CATG	3 cut(s)	361, 392, 407
HinfI	GANTC	2 cut(s)	526, 593
HpaII	CCGG	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	79, 608
Hpy188III	TCNNGA	5 cut(s)	53, 106, 404, 487, 523
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4V	TGCA	4 cut(s)	87, 232, 291, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	1 cut(s)	515
Hsp92II	CATG	3 cut(s)	361, 392, 407
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	247, 297, 603
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	9 cut(s)	24, 153, 248, 515, 536, 536, 563, 629, 653
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	3 cut(s)	391, 439, 454
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	3 cut(s)	6, 185, 345
MalI	GATC	3 cut(s)	249, 299, 605
MboI	GATC	3 cut(s)	247, 297, 603
MboII	GAAGA	5 cut(s)	66, 197, 280, 502, 566
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	2 cut(s)	234, 639
MlsI	TGGCCA	1 cut(s)	418
MluCI	AATT	9 cut(s)	123, 155, 178, 272, 292, 301, 426, 479, 585
MluNI	TGGCCA	1 cut(s)	418
MnlI	CCTC	6 cut(s)	113, 162, 208, 317, 326, 346
Mox20I	TGGCCA	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	418
MseI	TTAA	5 cut(s)	95, 135, 158, 393, 658
MslI	CAYNNNNRTG	2 cut(s)	362, 387
Msp20I	TGGCCA	1 cut(s)	418
MspA1I	CMGCKG	1 cut(s)	643
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	1 cut(s)	551
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	2 cut(s)	369, 571
MvaI	CCWGG	1 cut(s)	551
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	473
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	3 cut(s)	247, 297, 603
NlaIII	CATG	3 cut(s)	361, 392, 407
NlaIV	GGNNCC	2 cut(s)	101, 626
NmuCI	GTSAC	1 cut(s)	185
NruI	TCGCGA	1 cut(s)	107
PagI	TCATGA	1 cut(s)	403
PctI	GAATGC	2 cut(s)	369, 571
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	526, 593
PfoI	TCCNGGA	1 cut(s)	549
PkrI	GCNGC	3 cut(s)	329, 381, 454
PpuMI	RGGWCCY	2 cut(s)	99, 171
Psp5II	RGGWCCY	2 cut(s)	99, 171
Psp6I	CCWGG	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	2 cut(s)	101, 626
PspPI	GGNCC	3 cut(s)	59, 99, 171
PspPPI	RGGWCCY	2 cut(s)	99, 171
PstI	CTGCAG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	643
RruI	TCGCGA	1 cut(s)	107
RseI	CAYNNNNRTG	2 cut(s)	362, 387
SaqAI	TTAA	5 cut(s)	95, 135, 158, 393, 658
SatI	GCNGC	3 cut(s)	328, 380, 453
Sau3AI	GATC	3 cut(s)	247, 297, 603
Sau96I	GGNCC	3 cut(s)	59, 99, 171
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	2 cut(s)	234, 639
SetI	ASST	9 cut(s)	61, 176, 219, 314, 337, 438, 501, 516, 645
SfaNI	GCATC	3 cut(s)	391, 439, 454
SfcI	CTRYAG	1 cut(s)	328
SgrAI	CRCCGGYG	1 cut(s)	234
SinI	GGWCC	3 cut(s)	59, 99, 171
SmiMI	CAYNNNNRTG	2 cut(s)	362, 387
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	9 cut(s)	123, 155, 178, 272, 292, 301, 426, 479, 585
SsiI	CCGC	5 cut(s)	222, 238, 379, 453, 467
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	617
TasI	AATT	9 cut(s)	123, 155, 178, 272, 292, 301, 426, 479, 585
TauI	GCSGC	2 cut(s)	382, 455
TfiI	GAWTC	2 cut(s)	526, 593
Tru1I	TTAA	5 cut(s)	95, 135, 158, 393, 658
Tru9I	TTAA	5 cut(s)	95, 135, 158, 393, 658
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	327
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	458
TspRI	CASTG	1 cut(s)	18
VneI	GTGCAC	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	59, 99, 171
XapI	RAATTY	2 cut(s)	178, 479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.