Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002888.1

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

214849 .. 216044

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002888.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggggagaagcagtacttactatgataagaatgatggactgaagaaaggagcctgggctgcaagtgaagaccagattgtcaaagcctacgtcaaaaaacacggtctgaagagatgtgggaagagtgtgagactcaggtggttgaactatctgaggcctgatatcatcaaaggcaacattacagaagatgaagaagagctcatcatcaggctccacaaactcctgggaaacagatggtcattgatagccggaaggttaccagggcgaactgacaacgaaataaaaaactactggaattccaccttaaagaggaagctacaagaagaaaatcagttagaagtgtctaaagatgaggagatcaaggagggcttgtcatcctctgccgctgatgaggacgacccacatttgaccaaagacaatgtcattgaagacgaagatcatcgtcgtcagcatcacgatgttgacgttggagttggagttggagtaggagttgaagcaaccaataataacggtactggtgatgatgaatatctgagggatgacctttggtggaacaatttcataatggatttcaatgctacccaactcgacgtatctgaattccaaaccgacttccccgagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

208

Amino Acids

23.94

Weight (kDa)

4.99

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AciI	CCGC	1 cut(s)	384
AcsI	RAATTY	2 cut(s)	295, 599
AcuI	CTGAAG	2 cut(s)	62, 128
AfaI	GTAC	2 cut(s)	16, 514
AfiI	CCNNNNNNNGG	1 cut(s)	309
AgsI	TTSAA	4 cut(s)	145, 428, 494, 574
AjnI	CCWGG	3 cut(s)	53, 222, 259
AluBI	AGCT	2 cut(s)	199, 316
AluI	AGCT	2 cut(s)	199, 316
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	2 cut(s)	295, 599
ArsI	GACNNNNNNTTYG	4 cut(s)	75, 107, 405, 437
Asp700I	GAANNNNTTC	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	530
AvaI	CYCGRG	1 cut(s)	617
BanII	GRGCYC	1 cut(s)	201
BbsI	GAAGAC	2 cut(s)	75, 435
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	29, 228
BciT130I	CCWGG	3 cut(s)	55, 224, 261
BcoDI	GTCTC	1 cut(s)	124
BisI	GCNGC	2 cut(s)	60, 384
BlsI	GCNGC	2 cut(s)	61, 385
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	3 cut(s)	55, 224, 261
BmeT110I	CYCGRG	1 cut(s)	617
BmiI	GGNNCC	2 cut(s)	52, 212
BmrFI	CCNGG	3 cut(s)	55, 224, 261
BmsI	GCATC	1 cut(s)	460
BpiI	GAAGAC	2 cut(s)	75, 435
BsaBI	GATNNNNATC	1 cut(s)	528
BsaJI	CCNNGG	3 cut(s)	54, 223, 260
BsaXI	ACNNNNNCTCC	9 cut(s)	28, 356, 386, 462, 468, 474, 492, 498, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse1I	ACTGG	2 cut(s)	296, 520
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	3 cut(s)	55, 224, 261
BseDI	CCNNGG	3 cut(s)	54, 223, 260
BseGI	GGATG	2 cut(s)	374, 544
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMII	CTCAG	3 cut(s)	143, 148, 524
BseNI	ACTGG	2 cut(s)	296, 520
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	357, 436
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	3 cut(s)	144, 147, 525
BspLI	GGNNCC	2 cut(s)	52, 212
BspQI	GCTCTTC	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	296, 520
BssECI	CCNNGG	3 cut(s)	54, 223, 260
BssMI	GATC	2 cut(s)	357, 436
Bst2UI	CCWGG	3 cut(s)	55, 224, 261
Bst4CI	ACNGT	2 cut(s)	104, 512
Bst6I	CTCTTC	3 cut(s)	104, 116, 189
BstDEI	CTNAG	3 cut(s)	134, 152, 533
BstEII	GGTNACC	1 cut(s)	255
BstENI	CCTNNNNNAGG	1 cut(s)	307
BstF5I	GGATG	2 cut(s)	374, 544
BstKTI	GATC	2 cut(s)	360, 439
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	2 cut(s)	357, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	3 cut(s)	55, 224, 261
BstPI	GGTNACC	1 cut(s)	255
BstSCI	CCNGG	3 cut(s)	53, 222, 259
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	2 cut(s)	75, 435
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	374, 544
Csp6I	GTAC	2 cut(s)	15, 513
CviJI	RGCY	9 cut(s)	53, 59, 86, 157, 199, 211, 248, 316, 369
CviKI_1	RGCY	9 cut(s)	53, 59, 86, 157, 199, 211, 248, 316, 369
CviQI	GTAC	2 cut(s)	15, 513
DdeI	CTNAG	3 cut(s)	134, 152, 533
DpnI	GATC	2 cut(s)	359, 438
DpnII	GATC	2 cut(s)	357, 436
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	104, 116, 189
EarI	CTCTTC	3 cut(s)	104, 116, 189
Ecl136II	GAGCTC	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	62, 128
Eco88I	CYCGRG	1 cut(s)	617
Eco91I	GGTNACC	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	199
EcoNI	CCTNNNNNAGG	1 cut(s)	307
EcoO65I	GGTNACC	1 cut(s)	255
EcoRI	GAATTC	2 cut(s)	295, 599
EcoRII	CCWGG	3 cut(s)	53, 222, 259
EcoRV	GATATC	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	201
FaiI	YATR	2 cut(s)	24, 563
FalI	AAGNNNNNCTT	3 cut(s)	33, 353, 385
Fnu4HI	GCNGC	2 cut(s)	60, 384
FokI	GGATG	2 cut(s)	361, 551
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	60, 384
GluI	GCNGC	2 cut(s)	60, 384
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	4 cut(s)	108, 153, 534, 598
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	2 cut(s)	447, 593
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	2 cut(s)	104, 512
HpyCH4IV	ACGT	3 cut(s)	90, 465, 591
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	3 cut(s)	134, 152, 533
HpySE526I	ACGT	3 cut(s)	90, 465, 591
Kzo9I	GATC	2 cut(s)	357, 436
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	2 cut(s)	50, 216
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	460
MaeII	ACGT	3 cut(s)	90, 465, 591
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	2 cut(s)	359, 438
MboI	GATC	2 cut(s)	357, 436
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	3 cut(s)	295, 556, 599
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	3 cut(s)	448, 454, 460
MnlI	CCTC	7 cut(s)	147, 303, 346, 358, 385, 388, 528
MroXI	GAANNNNTTC	1 cut(s)	557
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	3 cut(s)	55, 224, 261
MvaI	CCWGG	3 cut(s)	55, 224, 261
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	2 cut(s)	357, 436
NlaIV	GGNNCC	2 cut(s)	52, 212
PceI	AGGCCT	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	557
PflFI	GACNNNGTC	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	61, 385
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	3 cut(s)	53, 222, 259
PspEI	GGTNACC	1 cut(s)	255
PspGI	CCWGG	3 cut(s)	53, 222, 259
PspN4I	GGNNCC	2 cut(s)	52, 212
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	2 cut(s)	16, 514
RsaNI	GTAC	2 cut(s)	15, 513
RseI	CAYNNNNRTG	1 cut(s)	456
SacI	GAGCTC	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	2 cut(s)	60, 384
Sau3AI	GATC	2 cut(s)	357, 436
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	3 cut(s)	55, 224, 261
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	9 cut(s)	93, 140, 201, 257, 305, 318, 468, 546, 594
SfaNI	GCATC	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	456
Sse9I	AATT	3 cut(s)	295, 556, 599
SseBI	AGGCCT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	384
SstI	GAGCTC	1 cut(s)	201
StuI	AGGCCT	1 cut(s)	157
StyD4I	CCNGG	3 cut(s)	53, 222, 259
TaaI	ACNGT	2 cut(s)	104, 512
TaiI	ACGT	3 cut(s)	93, 468, 594
TaqI	TCGA	1 cut(s)	588
TasI	AATT	3 cut(s)	295, 556, 599
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	204, 540, 550
Tth111I	GACNNNGTC	1 cut(s)	419
XagI	CCTNNNNNAGG	1 cut(s)	307
XapI	RAATTY	2 cut(s)	295, 599
XmnI	GAANNNNTTC	1 cut(s)	557
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.