Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Forward (+)

1071027 .. 1072556

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGGCGAAGCAGTACTTACTATGATAAGAATGATGGACTGAAGAAAGGAGCCTGGGTTGCAAGTGAAGACCAGATTGTCAAAGCCTACGTCAAAAAACACGGTGTAGGAAAATGGGGCAAACTATCCAAGGAAACAGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTCAGGTGGTTGAACTATCTGAGGCCTGATATCATCAAAGGCAACATTACAGAAGATGAAGAAGAGCTCATCATCAGGCTCCACAAACTCTTGGGAAACAGATGGTCATTGATAGCCGGAAGGTTACCAGGGCGAACTGACAATGAAATCAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTACAACAAGAAAATCACTTAGAAGTGTCTAAAGATGAGCAGATCAAGGAGGGCTTGTCATCGTCTGCCGCTGCTGCCGCTGCCGATGCTGCAGATGAGGACGACCCACATTTGACTAAGAACAAAGTCATTGAAGACGAAGAACATCATCATCAGCATCACGATGTTGACGTTGGAGTTGGAGTTGGAGTTGAAGCAACCAATAATAACGGTACTGGTGATGATGAATATCTGAGGGATGACCTTTGGTGGAACAATTTCATAATGGATTTCAATGCTACCCAACTCGACGAATCTGAATTCCAAATCGACTTCCCCGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

225

Amino Acids

25.67

Weight (kDa)

5.4

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	2.9e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 78	1.7e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 113	5.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 122	4.4e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AciI	CCGC	2 cut(s)	420, 429
AcsI	RAATTY	2 cut(s)	331, 650
AcuI	CTGAAG	2 cut(s)	62, 164
AfaI	GTAC	2 cut(s)	16, 565
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	4 cut(s)	181, 485, 545, 625
AjnI	CCWGG	2 cut(s)	53, 295
AluBI	AGCT	2 cut(s)	235, 352
AluI	AGCT	2 cut(s)	235, 352
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	668
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	4 cut(s)	422, 425, 431, 440
ApoI	RAATTY	2 cut(s)	331, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	75, 107
Asp700I	GAANNNNTTC	1 cut(s)	608
AsuHPI	GGTGA	1 cut(s)	581
AvaI	CYCGRG	1 cut(s)	668
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	75, 492
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	4 cut(s)	409, 412, 418, 427
BccI	CCATC	2 cut(s)	29, 264
BciT130I	CCWGG	2 cut(s)	55, 297
BcoDI	GTCTC	1 cut(s)	160
BfmI	CTRYAG	1 cut(s)	441
BisI	GCNGC	6 cut(s)	420, 423, 426, 429, 432, 441
BlsI	GCNGC	6 cut(s)	421, 424, 427, 430, 433, 442
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	55, 297
BmeT110I	CYCGRG	1 cut(s)	668
BmiI	GGNNCC	2 cut(s)	52, 248
BmrFI	CCNGG	2 cut(s)	55, 297
BmsI	GCATC	2 cut(s)	427, 517
BpiI	GAAGAC	2 cut(s)	75, 492
BsaBI	GATNNNNATC	1 cut(s)	579
BsaJI	CCNNGG	3 cut(s)	54, 129, 296
BsaXI	ACNNNNNCTCC	8 cut(s)	42, 72, 392, 422, 519, 525, 549, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	332, 571
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	2 cut(s)	55, 297
BseDI	CCNNGG	3 cut(s)	54, 129, 296
BseGI	GGATG	1 cut(s)	595
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	3 cut(s)	179, 184, 575
BseNI	ACTGG	2 cut(s)	332, 571
BseXI	GCAGC	4 cut(s)	409, 412, 418, 427
BshFI	GGCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	668
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	668
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	393
BspACI	CCGC	2 cut(s)	420, 429
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	3 cut(s)	180, 183, 576
BspLI	GGNNCC	2 cut(s)	52, 248
BspMAI	CTGCAG	1 cut(s)	445
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	332, 571
BssECI	CCNNGG	3 cut(s)	54, 129, 296
BssMI	GATC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	55, 297
Bst4CI	ACNGT	2 cut(s)	104, 563
Bst6I	CTCTTC	3 cut(s)	140, 152, 225
BstDEI	CTNAG	5 cut(s)	170, 188, 370, 468, 584
BstEII	GGTNACC	1 cut(s)	291
BstENI	CCTNNNNNAGG	1 cut(s)	343
BstF5I	GGATG	1 cut(s)	595
BstKTI	GATC	1 cut(s)	396
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 425, 428, 431, 437, 440
BstNI	CCWGG	2 cut(s)	55, 297
BstPI	GGTNACC	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	53, 295
BstSFI	CTRYAG	1 cut(s)	441
BstV1I	GCAGC	4 cut(s)	409, 412, 418, 427
BstV2I	GAAGAC	2 cut(s)	75, 492
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	595
Csp6I	GTAC	2 cut(s)	15, 564
CviJI	RGCY	8 cut(s)	53, 86, 193, 235, 247, 284, 352, 405
CviKI_1	RGCY	8 cut(s)	53, 86, 193, 235, 247, 284, 352, 405
CviQI	GTAC	2 cut(s)	15, 564
DdeI	CTNAG	5 cut(s)	170, 188, 370, 468, 584
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	140, 152, 225
EarI	CTCTTC	3 cut(s)	140, 152, 225
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	62, 164
Eco88I	CYCGRG	1 cut(s)	668
Eco91I	GGTNACC	1 cut(s)	291
EcoICRI	GAGCTC	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	343
EcoO65I	GGTNACC	1 cut(s)	291
EcoRI	GAATTC	2 cut(s)	331, 650
EcoRII	CCWGG	2 cut(s)	53, 295
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	129
FaiI	YATR	2 cut(s)	24, 614
FalI	AAGNNNNNCTT	3 cut(s)	33, 389, 421
Fnu4HI	GCNGC	6 cut(s)	420, 423, 426, 429, 432, 441
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	6 cut(s)	420, 423, 426, 429, 432, 441
GluI	GCNGC	6 cut(s)	420, 423, 426, 429, 432, 441
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	2 cut(s)	168, 644
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	4 cut(s)	144, 189, 585, 649
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	2 cut(s)	104, 563
HpyCH4IV	ACGT	2 cut(s)	90, 522
HpyCH4V	TGCA	2 cut(s)	62, 443
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 425, 428, 431, 437, 440
HpyF3I	CTNAG	5 cut(s)	170, 188, 370, 468, 584
HpySE526I	ACGT	2 cut(s)	90, 522
Kzo9I	GATC	1 cut(s)	393
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	2 cut(s)	50, 252
Lsp1109I	GCAGC	4 cut(s)	409, 412, 418, 427
LweI	GCATC	2 cut(s)	427, 517
MaeII	ACGT	2 cut(s)	90, 522
MaeIII	GTNAC	1 cut(s)	291
MalI	GATC	1 cut(s)	395
MboI	GATC	1 cut(s)	393
MboII	GAAGA	9 cut(s)	55, 80, 157, 169, 233, 239, 242, 497, 503
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	331, 607, 650
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	3 cut(s)	505, 511, 517
MnlI	CCTC	5 cut(s)	183, 339, 394, 442, 579
MroXI	GAANNNNTTC	1 cut(s)	608
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	513
MspA1I	CMGCKG	2 cut(s)	422, 431
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	55, 297
MvaI	CCWGG	2 cut(s)	55, 297
MwoI	GCNNNNNNNGC	6 cut(s)	59, 425, 428, 431, 437, 440
NdeII	GATC	1 cut(s)	393
NlaIV	GGNNCC	2 cut(s)	52, 248
PceI	AGGCCT	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	2 cut(s)	519, 666
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	644
PkrI	GCNGC	6 cut(s)	421, 424, 427, 430, 433, 442
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	53, 295
PspEI	GGTNACC	1 cut(s)	291
PspGI	CCWGG	2 cut(s)	53, 295
PspN4I	GGNNCC	2 cut(s)	52, 248
PstI	CTGCAG	1 cut(s)	445
RsaI	GTAC	2 cut(s)	16, 565
RsaNI	GTAC	2 cut(s)	15, 564
RseI	CAYNNNNRTG	1 cut(s)	513
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	6 cut(s)	420, 423, 426, 429, 432, 441
Sau3AI	GATC	1 cut(s)	393
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	2 cut(s)	55, 297
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	9 cut(s)	93, 142, 176, 237, 293, 341, 354, 525, 597
SfaNI	GCATC	2 cut(s)	427, 517
SfcI	CTRYAG	1 cut(s)	441
SmiMI	CAYNNNNRTG	1 cut(s)	513
Sse9I	AATT	3 cut(s)	331, 607, 650
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	2 cut(s)	420, 429
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	2 cut(s)	53, 295
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	104, 563
TaiI	ACGT	2 cut(s)	93, 525
TaqI	TCGA	2 cut(s)	639, 660
TasI	AATT	3 cut(s)	331, 607, 650
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	2 cut(s)	422, 431
TfiI	GAWTC	1 cut(s)	644
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TseI	GCWGC	4 cut(s)	422, 425, 431, 440
TspDTI	ATGAA	4 cut(s)	240, 327, 591, 601
XagI	CCTNNNNNAGG	1 cut(s)	343
XapI	RAATTY	2 cut(s)	331, 650
XmnI	GAANNNNTTC	1 cut(s)	608
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.