Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

64519080 .. 64520303

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG444300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGGGAAAGCAGTACGTGCTATGATAAGAACGAGGGACCGAAGAAAGGAGCCTGGGCTGCAAGTGAAGACCAGATTGTCATAGACTACGTCAAAAAACATGGTGTAGGAAAATGGGGCAAATTATCTAGGGAAACAGGTCTGAAGAGATGTGGGAAGAGTGTGAGGCTTAGGTGGCTGAATTATCTGAGGCCTGGTATCGTTAGAGGCAACATTACAGAAGATGAAGAAGAGCTCATCATCAGACTCCACAAACTCTTGGGCAACAGATGGTCACTGATAGCCGGAAGGATACCAGGGCGAACTGATAATGAAATAAAAAACTACTGGAATTCCTGCTTAAAGAGGAAGCTACAACAACAAAACCACTTGGCAGTGCCTAGAAATGAGGAGATCAGGGAGGACTTGTCATCCTCTGCTGCGGTTGCCGCCGCCGCTGAGAAGAACCCACATTTGACCGGAAACAATGTCAATGAAGACGAAGATTATCATCAGCATCATGATGTTGACTTTGGAGTTGGAATTGAGTTTGAAGCAACTGATAATAATAACGGCACTGGTGATGATGAACATCTGAGGGATGACCTTTGGTGGAACAACTTCATAATGGATCTGAATGATATCCAACTCGATGCATCTGAATTCCAACCCGACTTCCCCGAGATTAGGCTAGGGAATCTATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

228

Amino Acids

26.12

Weight (kDa)

5.31

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	6.7e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 77	2.4e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 114	6.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 122	2.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AciI	CCGC	4 cut(s)	422, 429, 432, 435
AclWI	GGATC	1 cut(s)	618
AcsI	RAATTY	2 cut(s)	331, 641
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	47, 666
AgsI	TTSAA	1 cut(s)	533
AjnI	CCWGG	3 cut(s)	53, 193, 295
AluBI	AGCT	2 cut(s)	235, 352
AluI	AGCT	2 cut(s)	235, 352
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	618
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	59, 419
ApoI	RAATTY	2 cut(s)	331, 641
Asp700I	GAANNNNTTC	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	75, 483
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	46, 406
BccI	CCATC	1 cut(s)	264
BceAI	ACGGC	1 cut(s)	568
BciT130I	CCWGG	3 cut(s)	55, 195, 297
BciVI	GTATCC	1 cut(s)	285
BfaI	CTAG	3 cut(s)	129, 381, 671
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	5 cut(s)	60, 420, 429, 432, 435
BlsI	GCNGC	5 cut(s)	61, 421, 430, 433, 436
Bme1390I	CCNGG	3 cut(s)	55, 195, 297
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	39, 52
BmrFI	CCNGG	3 cut(s)	55, 195, 297
BmsI	GCATC	3 cut(s)	505, 622, 644
BpiI	GAAGAC	2 cut(s)	75, 483
Bpu10I	CCTNAGC	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	18
BsaBI	GATNNNNATC	2 cut(s)	489, 570
BsaJI	CCNNGG	2 cut(s)	54, 296
BsaWI	WCCGGW	1 cut(s)	458
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 666
Bse1I	ACTGG	2 cut(s)	332, 562
Bse8I	GATNNNNATC	2 cut(s)	489, 570
BseBI	CCWGG	3 cut(s)	55, 195, 297
BseDI	CCNNGG	2 cut(s)	54, 296
BseGI	GGATG	2 cut(s)	410, 586
BseJI	GATNNNNATC	2 cut(s)	489, 570
BseLI	CCNNNNNNNGG	2 cut(s)	47, 666
BseMII	CTCAG	3 cut(s)	179, 429, 566
BseNI	ACTGG	2 cut(s)	332, 562
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	46, 406
BshFI	GGCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	2 cut(s)	285, 459
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	47, 666
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	393, 610
BspACI	CCGC	4 cut(s)	422, 429, 432, 435
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	3 cut(s)	180, 430, 567
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	39, 52
BspPI	GGATC	1 cut(s)	618
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	332, 562
BssECI	CCNNGG	2 cut(s)	54, 296
BssMI	GATC	2 cut(s)	393, 610
Bst2UI	CCWGG	3 cut(s)	55, 195, 297
Bst6I	CTCTTC	3 cut(s)	140, 152, 225
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	18
BstDEI	CTNAG	4 cut(s)	170, 188, 438, 575
BstF5I	GGATG	2 cut(s)	410, 586
BstKTI	GATC	2 cut(s)	396, 613
BstMBI	GATC	2 cut(s)	393, 610
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 59, 175, 425, 428, 434
BstNI	CCWGG	3 cut(s)	55, 195, 297
BstSCI	CCNGG	3 cut(s)	53, 193, 295
BstV1I	GCAGC	2 cut(s)	46, 406
BstV2I	GAAGAC	2 cut(s)	75, 483
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	410, 586
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	3 cut(s)	275, 381, 555
CciI	TCATGA	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	2 cut(s)	101, 500
CviJI	RGCY	9 cut(s)	53, 59, 169, 178, 193, 235, 284, 352, 670
CviKI_1	RGCY	9 cut(s)	53, 59, 169, 178, 193, 235, 284, 352, 670
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	4 cut(s)	170, 188, 438, 575
DpnI	GATC	2 cut(s)	395, 612
DpnII	GATC	2 cut(s)	393, 610
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	140, 152, 225
EarI	CTCTTC	3 cut(s)	140, 152, 225
Ecl136II	GAGCTC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	659
EcoICRI	GAGCTC	1 cut(s)	235
EcoRI	GAATTC	2 cut(s)	331, 641
EcoRII	CCWGG	3 cut(s)	53, 193, 295
EcoRV	GATATC	1 cut(s)	622
EcoT22I	ATGCAT	1 cut(s)	637
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	2 cut(s)	104, 503
FaiI	YATR	6 cut(s)	24, 83, 102, 501, 605, 682
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	2 cut(s)	100, 499
Fnu4HI	GCNGC	5 cut(s)	60, 420, 429, 432, 435
FokI	GGATG	2 cut(s)	397, 593
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	5 cut(s)	60, 420, 429, 432, 435
FspBI	CTAG	3 cut(s)	129, 381, 671
GluI	GCNGC	5 cut(s)	60, 420, 429, 432, 435
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	2 cut(s)	285, 459
Hin1II	CATG	2 cut(s)	104, 503
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	2 cut(s)	246, 676
HpaII	CCGG	2 cut(s)	285, 459
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	6 cut(s)	144, 189, 245, 576, 615, 640
Hpy188III	TCNNGA	1 cut(s)	500
Hpy8I	GTNNAC	1 cut(s)	508
HpyAV	CCTTC	1 cut(s)	282
HpyCH4IV	ACGT	2 cut(s)	17, 90
HpyCH4V	TGCA	2 cut(s)	62, 635
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 59, 175, 425, 428, 434
HpyF3I	CTNAG	4 cut(s)	170, 188, 438, 575
HpySE526I	ACGT	2 cut(s)	17, 90
Hsp92II	CATG	2 cut(s)	104, 503
Kzo9I	GATC	2 cut(s)	393, 610
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	2 cut(s)	46, 406
LweI	GCATC	3 cut(s)	505, 622, 644
MaeI	CTAG	3 cut(s)	129, 381, 671
MaeII	ACGT	2 cut(s)	17, 90
MaeIII	GTNAC	1 cut(s)	273
MalI	GATC	2 cut(s)	395, 612
MboI	GATC	2 cut(s)	393, 610
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	5 cut(s)	122, 181, 331, 522, 641
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	3 cut(s)	499, 649, 670
MnlI	CCTC	9 cut(s)	28, 159, 183, 200, 339, 382, 394, 424, 570
Mph1103I	ATGCAT	1 cut(s)	637
MroXI	GAANNNNTTC	1 cut(s)	599
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	2 cut(s)	285, 459
MspR9I	CCNGG	3 cut(s)	55, 195, 297
MvaI	CCWGG	3 cut(s)	55, 195, 297
MwoI	GCNNNNNNNGC	6 cut(s)	18, 59, 175, 425, 428, 434
NdeII	GATC	2 cut(s)	393, 610
NlaIII	CATG	2 cut(s)	104, 503
NlaIV	GGNNCC	2 cut(s)	39, 52
NmuCI	GTSAC	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	637
PagI	TCATGA	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	676
PflFI	GACNNNGTC	1 cut(s)	89
PkrI	GCNGC	5 cut(s)	61, 421, 430, 433, 436
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Ppu21I	YACGTR	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	3 cut(s)	53, 193, 295
PspGI	CCWGG	3 cut(s)	53, 193, 295
PspN4I	GGNNCC	2 cut(s)	39, 52
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	610
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	501
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	5 cut(s)	60, 420, 429, 432, 435
Sau3AI	GATC	2 cut(s)	393, 610
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	3 cut(s)	55, 195, 297
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	7 cut(s)	20, 93, 142, 176, 237, 354, 588
SfaNI	GCATC	3 cut(s)	505, 622, 644
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	5 cut(s)	122, 181, 331, 522, 641
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	4 cut(s)	422, 429, 432, 435
SspMI	CTAG	3 cut(s)	129, 381, 671
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	3 cut(s)	53, 193, 295
TaiI	ACGT	2 cut(s)	20, 93
TaqI	TCGA	1 cut(s)	630
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	5 cut(s)	122, 181, 331, 522, 641
TauI	GCSGC	3 cut(s)	431, 434, 437
TfiI	GAWTC	1 cut(s)	676
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	3 cut(s)	282, 381, 562
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	2 cut(s)	59, 419
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	5 cut(s)	240, 327, 489, 582, 592
TspRI	CASTG	3 cut(s)	282, 381, 562
Tth111I	GACNNNGTC	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	2 cut(s)	331, 641
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	3 cut(s)	129, 381, 671
Zsp2I	ATGCAT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.