Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007525.1

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

1073 .. 2285

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007525.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atggggaaaagcagtacgtgctatgataagaacgagggaccgaagaaaggaggagcctgggctgcaagtgaagaccagattgtcaaagactacgtcaaaaaacatggtgtgggaaaatggggcaaattatctagggaaacaggtctgaagagatgtgggaagagtgtgaggcttaggttgctgaattatctgaggcctggtatcgttagaggcaacattacagaagatgaagaagagctcatcatcagactccacaaactcttgggcaacagatggtccctggtagccggcaggataccagggcgaactgataatgaaataaagaactactggaattcctgcttaaagaggaagctacaacaacaaaaccacttggaagtgcctagaaatgaggagatcagggaggacttgtcatcctctgctgcggttgccgccgccgctgagaagaacccacatttgaccggaaacaatgtcaatgaagacgaagattatcatcagcatcatgatgttgactttgcagttggaattgagtttgaagcaattgataataataacggcactggtgatgatgaacatctgagggatgacctttggtggaacaacttcataatggatctgaatgatatccaactcgatgcatctgaattccaacccgacttccccgagattaggctagggaatctatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

229

Amino Acids

26.19

Weight (kDa)

5.53

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AciI	CCGC	4 cut(s)	425, 432, 435, 438
AclWI	GGATC	1 cut(s)	621
AcsI	RAATTY	2 cut(s)	334, 644
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	47, 669
AgsI	TTSAA	1 cut(s)	536
AjnI	CCWGG	4 cut(s)	56, 196, 279, 298
AluBI	AGCT	2 cut(s)	238, 355
AluI	AGCT	2 cut(s)	238, 355
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	621
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	62, 422
ApoI	RAATTY	2 cut(s)	334, 644
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
Asp700I	GAANNNNTTC	1 cut(s)	602
AspS9I	GGNCC	2 cut(s)	38, 276
AsuHPI	GGTGA	1 cut(s)	575
AvaI	CYCGRG	1 cut(s)	662
AvaII	GGWCC	2 cut(s)	38, 276
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	2 cut(s)	78, 486
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	49, 409
BccI	CCATC	1 cut(s)	267
BceAI	ACGGC	1 cut(s)	571
BciT130I	CCWGG	4 cut(s)	58, 198, 281, 300
BciVI	GTATCC	1 cut(s)	288
BfaI	CTAG	3 cut(s)	132, 384, 674
BfuI	GTATCC	1 cut(s)	288
BisI	GCNGC	5 cut(s)	63, 423, 432, 435, 438
BlsI	GCNGC	5 cut(s)	64, 424, 433, 436, 439
Bme1390I	CCNGG	4 cut(s)	58, 198, 281, 300
Bme18I	GGWCC	2 cut(s)	38, 276
BmeT110I	CYCGRG	1 cut(s)	662
BmgT120I	GGNCC	2 cut(s)	38, 276
BmiI	GGNNCC	3 cut(s)	39, 55, 278
BmrFI	CCNGG	4 cut(s)	58, 198, 281, 300
BmsI	GCATC	3 cut(s)	508, 625, 647
BpiI	GAAGAC	2 cut(s)	78, 486
Bpu10I	CCTNAGC	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	18
BsaBI	GATNNNNATC	2 cut(s)	492, 573
BsaJI	CCNNGG	3 cut(s)	57, 279, 299
BsaWI	WCCGGW	1 cut(s)	461
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 669
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	2 cut(s)	335, 565
Bse8I	GATNNNNATC	2 cut(s)	492, 573
BseBI	CCWGG	4 cut(s)	58, 198, 281, 300
BseDI	CCNNGG	3 cut(s)	57, 279, 299
BseGI	GGATG	2 cut(s)	413, 589
BseJI	GATNNNNATC	2 cut(s)	492, 573
BseLI	CCNNNNNNNGG	2 cut(s)	47, 669
BseMII	CTCAG	3 cut(s)	182, 432, 569
BseNI	ACTGG	2 cut(s)	335, 565
BseRI	GAGGAG	2 cut(s)	66, 407
BseXI	GCAGC	2 cut(s)	49, 409
BshFI	GGCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	2 cut(s)	288, 462
BslFI	GGGAC	2 cut(s)	51, 262
BslI	CCNNNNNNNGG	2 cut(s)	47, 669
BsmFI	GGGAC	2 cut(s)	51, 262
BsnI	GGCC	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	662
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	396, 613
BspACI	CCGC	4 cut(s)	425, 432, 435, 438
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	3 cut(s)	183, 433, 570
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	3 cut(s)	39, 55, 278
BspPI	GGATC	1 cut(s)	621
BspQI	GCTCTTC	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	335, 565
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	3 cut(s)	57, 279, 299
BssMI	GATC	2 cut(s)	396, 613
Bst2UI	CCWGG	4 cut(s)	58, 198, 281, 300
Bst6I	CTCTTC	3 cut(s)	143, 155, 228
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	4 cut(s)	173, 191, 441, 578
BstF5I	GGATG	2 cut(s)	413, 589
BstKTI	GATC	2 cut(s)	399, 616
BstMBI	GATC	2 cut(s)	396, 613
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 62, 178, 428, 431, 437
BstNI	CCWGG	4 cut(s)	58, 198, 281, 300
BstSCI	CCNGG	4 cut(s)	56, 196, 279, 298
BstV1I	GCAGC	2 cut(s)	49, 409
BstV2I	GAAGAC	2 cut(s)	78, 486
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	413, 589
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	1 cut(s)	289
CciI	TCATGA	1 cut(s)	502
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	38, 276
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	2 cut(s)	104, 503
CviJI	RGCY	8 cut(s)	56, 62, 172, 196, 238, 287, 355, 673
CviKI_1	RGCY	8 cut(s)	56, 62, 172, 196, 238, 287, 355, 673
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	4 cut(s)	173, 191, 441, 578
DpnI	GATC	2 cut(s)	398, 615
DpnII	GATC	2 cut(s)	396, 613
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	3 cut(s)	143, 155, 228
EarI	CTCTTC	3 cut(s)	143, 155, 228
Ecl136II	GAGCTC	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	625
Eco47I	GGWCC	2 cut(s)	38, 276
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	662
EcoICRI	GAGCTC	1 cut(s)	238
EcoRI	GAATTC	2 cut(s)	334, 644
EcoRII	CCWGG	4 cut(s)	56, 196, 279, 298
EcoRV	GATATC	1 cut(s)	625
EcoT22I	ATGCAT	1 cut(s)	640
EcoT38I	GRGCYC	1 cut(s)	240
FaeI	CATG	2 cut(s)	107, 506
FaiI	YATR	5 cut(s)	24, 105, 504, 608, 685
FaqI	GGGAC	2 cut(s)	51, 262
FatI	CATG	2 cut(s)	103, 502
Fnu4HI	GCNGC	5 cut(s)	63, 423, 432, 435, 438
FokI	GGATG	2 cut(s)	400, 596
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	5 cut(s)	63, 423, 432, 435, 438
FspBI	CTAG	3 cut(s)	132, 384, 674
GluI	GCNGC	5 cut(s)	63, 423, 432, 435, 438
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	2 cut(s)	288, 462
Hin1II	CATG	2 cut(s)	107, 506
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	2 cut(s)	249, 679
HpaII	CCGG	2 cut(s)	288, 462
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	6 cut(s)	147, 192, 248, 579, 618, 643
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	1 cut(s)	511
HpyCH4IV	ACGT	2 cut(s)	17, 93
HpyCH4V	TGCA	3 cut(s)	65, 518, 638
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 62, 178, 428, 431, 437
HpyF3I	CTNAG	4 cut(s)	173, 191, 441, 578
HpySE526I	ACGT	2 cut(s)	17, 93
Hsp92II	CATG	2 cut(s)	107, 506
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	396, 613
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	2 cut(s)	49, 409
LweI	GCATC	3 cut(s)	508, 625, 647
MaeI	CTAG	3 cut(s)	132, 384, 674
MaeII	ACGT	2 cut(s)	17, 93
MalI	GATC	2 cut(s)	398, 615
MboI	GATC	2 cut(s)	396, 613
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	6 cut(s)	125, 184, 334, 525, 540, 644
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	3 cut(s)	502, 652, 673
Mph1103I	ATGCAT	1 cut(s)	640
MroNI	GCCGGC	1 cut(s)	287
MroXI	GAANNNNTTC	1 cut(s)	602
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	2 cut(s)	288, 462
MspR9I	CCNGG	4 cut(s)	58, 198, 281, 300
MunI	CAATTG	1 cut(s)	540
MvaI	CCWGG	4 cut(s)	58, 198, 281, 300
MwoI	GCNNNNNNNGC	6 cut(s)	18, 62, 178, 428, 431, 437
NaeI	GCCGGC	1 cut(s)	289
NdeII	GATC	2 cut(s)	396, 613
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	2 cut(s)	107, 506
NlaIV	GGNNCC	3 cut(s)	39, 55, 278
NsiI	ATGCAT	1 cut(s)	640
PagI	TCATGA	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	228
PdiI	GCCGGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	602
PfeI	GAWTC	1 cut(s)	679
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	64, 424, 433, 436, 439
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Ppu21I	YACGTR	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	4 cut(s)	56, 196, 279, 298
PspGI	CCWGG	4 cut(s)	56, 196, 279, 298
PspN4I	GGNNCC	3 cut(s)	39, 55, 278
PspPI	GGNCC	2 cut(s)	38, 276
PsuI	RGATCY	1 cut(s)	613
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	5 cut(s)	63, 423, 432, 435, 438
Sau3AI	GATC	2 cut(s)	396, 613
Sau96I	GGNCC	2 cut(s)	38, 276
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	4 cut(s)	58, 198, 281, 300
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	7 cut(s)	20, 96, 145, 179, 240, 357, 591
SfaNI	GCATC	3 cut(s)	508, 625, 647
SinI	GGWCC	2 cut(s)	38, 276
SmiMI	CAYNNNNRTG	1 cut(s)	504
Sse9I	AATT	6 cut(s)	125, 184, 334, 525, 540, 644
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	4 cut(s)	425, 432, 435, 438
SspMI	CTAG	3 cut(s)	132, 384, 674
SstI	GAGCTC	1 cut(s)	240
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	4 cut(s)	56, 196, 279, 298
TaiI	ACGT	2 cut(s)	20, 96
TaqI	TCGA	1 cut(s)	633
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	6 cut(s)	125, 184, 334, 525, 540, 644
TauI	GCSGC	3 cut(s)	434, 437, 440
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	1 cut(s)	565
TseI	GCWGC	2 cut(s)	62, 422
TspDTI	ATGAA	5 cut(s)	243, 330, 492, 585, 595
TspRI	CASTG	1 cut(s)	565
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	2 cut(s)	38, 276
XapI	RAATTY	2 cut(s)	334, 644
XmnI	GAANNNNTTC	1 cut(s)	602
XspI	CTAG	3 cut(s)	132, 384, 674
Zsp2I	ATGCAT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.