Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000103.1

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

70070 .. 71414

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000103.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgaggagaagcagcacttactatgataagaatgatggactgaagaaaggagcctgggctgcaagtgaagaccagattgtcaaagactacgtcaaaaaacacggcatcggaaaatggggcaaactaactagggaaacaggtctgaagagatgtgggaagagtgtgagacttaggtggatgaactatctgaggcctgatatcatcagaggctacattaaagaagatgaagaagagctcatcatcaggctccacaaactcctgggaaacagatggtcattgatagctggaaggataccagggcgaactgacaatgaaatcaaaaactactggaattccaccttaaagaggaagctggaacaagaaaatcacttagaagtgtttaaagatgaggagatcaaggaggacttgccatcctctgttgctgctgcagatgaggaaaacccacgtttgaccaaaaacaatgtcgttgaagacgaagatcatcatcgtcagcattacgatgttgacgttggagttggagttggagtggaagcaactaataataacggtattggtgatgatgaatatctgagggatgacctttggtggaacaatttcatagtggatttcaatgatacccaactcgacgtatctgacttccaaaccgacttcccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

218

Amino Acids

25.48

Weight (kDa)

5.36

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	2 cut(s)	62, 164
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	470, 610
AjnI	CCWGG	3 cut(s)	53, 258, 295
AluBI	AGCT	3 cut(s)	235, 284, 352
AluI	AGCT	3 cut(s)	235, 284, 352
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	160
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	4 cut(s)	12, 59, 422, 425
ApoI	RAATTY	1 cut(s)	331
ArsI	GACNNNNNNTTYG	4 cut(s)	75, 107, 447, 479
Asp700I	GAANNNNTTC	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	75, 477
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	4 cut(s)	24, 46, 409, 412
BccI	CCATC	3 cut(s)	29, 264, 418
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	3 cut(s)	55, 260, 297
BciVI	GTATCC	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	426
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	4 cut(s)	13, 60, 423, 426
BlsI	GCNGC	4 cut(s)	14, 61, 424, 427
Bme1390I	CCNGG	3 cut(s)	55, 260, 297
BmiI	GGNNCC	2 cut(s)	52, 248
BmrFI	CCNGG	3 cut(s)	55, 260, 297
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	75, 477
BsaBI	GATNNNNATC	2 cut(s)	483, 564
BsaJI	CCNNGG	3 cut(s)	54, 259, 296
BsaXI	ACNNNNNCTCC	4 cut(s)	504, 510, 534, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	332
Bse8I	GATNNNNATC	2 cut(s)	483, 564
BseBI	CCWGG	3 cut(s)	55, 260, 297
BseDI	CCNNGG	3 cut(s)	54, 259, 296
BseGI	GGATG	3 cut(s)	183, 410, 580
BseJI	GATNNNNATC	2 cut(s)	483, 564
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	179, 560
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	2 cut(s)	19, 404
BseXI	GCAGC	4 cut(s)	24, 46, 409, 412
BshFI	GGCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	393, 478
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	2 cut(s)	180, 561
BspLI	GGNNCC	2 cut(s)	52, 248
BspMAI	CTGCAG	1 cut(s)	430
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	3 cut(s)	54, 259, 296
BssMI	GATC	2 cut(s)	393, 478
Bst2UI	CCWGG	3 cut(s)	55, 260, 297
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	3 cut(s)	140, 152, 225
BstDEI	CTNAG	4 cut(s)	170, 188, 370, 569
BstENI	CCTNNNNNAGG	1 cut(s)	343
BstF5I	GGATG	3 cut(s)	183, 410, 580
BstKTI	GATC	2 cut(s)	396, 481
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	393, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	3 cut(s)	55, 260, 297
BstSCI	CCNGG	3 cut(s)	53, 258, 295
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	4 cut(s)	24, 46, 409, 412
BstV2I	GAAGAC	2 cut(s)	75, 477
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	183, 410, 580
CviJI	RGCY	8 cut(s)	53, 59, 193, 210, 235, 247, 284, 352
CviKI_1	RGCY	8 cut(s)	53, 59, 193, 210, 235, 247, 284, 352
DdeI	CTNAG	4 cut(s)	170, 188, 370, 569
DpnI	GATC	2 cut(s)	395, 480
DpnII	GATC	2 cut(s)	393, 478
DraI	TTTAAA	1 cut(s)	382
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	140, 152, 225
EarI	CTCTTC	3 cut(s)	140, 152, 225
Ecl136II	GAGCTC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	62, 164
EcoICRI	GAGCTC	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	3 cut(s)	53, 258, 295
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	237
FaiI	YATR	2 cut(s)	24, 599
FalI	AAGNNNNNCTT	3 cut(s)	33, 389, 421
Fnu4HI	GCNGC	4 cut(s)	13, 60, 423, 426
FokI	GGATG	3 cut(s)	190, 397, 587
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	4 cut(s)	13, 60, 423, 426
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	4 cut(s)	13, 60, 423, 426
HaeIII	GGCC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	6 cut(s)	110, 144, 189, 206, 570, 634
Hpy8I	GTNNAC	1 cut(s)	505
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4IV	ACGT	4 cut(s)	90, 445, 507, 627
HpyCH4V	TGCA	2 cut(s)	62, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	4 cut(s)	170, 188, 370, 569
HpySE526I	ACGT	4 cut(s)	90, 445, 507, 627
Kzo9I	GATC	2 cut(s)	393, 478
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	2 cut(s)	50, 252
Lsp1109I	GCAGC	4 cut(s)	24, 46, 409, 412
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	4 cut(s)	90, 445, 507, 627
MalI	GATC	2 cut(s)	395, 480
MboI	GATC	2 cut(s)	393, 478
MboII	GAAGA	9 cut(s)	55, 80, 157, 169, 233, 239, 242, 482, 488
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	331, 592
MmeI	TCCRAC	3 cut(s)	490, 496, 502
MnlI	CCTC	8 cut(s)	183, 200, 339, 382, 394, 424, 427, 564
MroXI	GAANNNNTTC	1 cut(s)	593
MseI	TTAA	3 cut(s)	216, 341, 381
MslI	CAYNNNNRTG	1 cut(s)	498
MspR9I	CCNGG	3 cut(s)	55, 260, 297
MvaI	CCWGG	3 cut(s)	55, 260, 297
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	2 cut(s)	393, 478
NlaIV	GGNNCC	2 cut(s)	52, 248
PceI	AGGCCT	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	2 cut(s)	471, 504
PdmI	GAANNNNTTC	1 cut(s)	593
PflFI	GACNNNGTC	1 cut(s)	89
PkrI	GCNGC	4 cut(s)	14, 61, 424, 427
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	3 cut(s)	53, 258, 295
PspGI	CCWGG	3 cut(s)	53, 258, 295
PspN4I	GGNNCC	2 cut(s)	52, 248
PstI	CTGCAG	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	498
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	216, 341, 381
SatI	GCNGC	4 cut(s)	13, 60, 423, 426
Sau3AI	GATC	2 cut(s)	393, 478
ScrFI	CCNGG	3 cut(s)	55, 260, 297
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	498
Sse9I	AATT	2 cut(s)	331, 592
SseBI	AGGCCT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	3 cut(s)	53, 258, 295
TaaI	ACNGT	1 cut(s)	548
TaiI	ACGT	4 cut(s)	93, 448, 510, 630
TaqI	TCGA	1 cut(s)	624
TasI	AATT	2 cut(s)	331, 592
Tru1I	TTAA	3 cut(s)	216, 341, 381
Tru9I	TTAA	3 cut(s)	216, 341, 381
TseI	GCWGC	4 cut(s)	12, 59, 422, 425
TspDTI	ATGAA	5 cut(s)	194, 240, 327, 576, 586
Tth111I	GACNNNGTC	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	343
XapI	RAATTY	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.