Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003068

Physical Location & Seq

Genomic Coordinates Reverse (-)

17527334 .. 17531170

Gene Structure 3837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0182000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGGGGGGAAGGGAAGAACACCATGTTGTGATAAGAGCCAAGTGAAGAGAGGTCCCTGGAGTCCTTCTGAGGACTTGAGGCTTATCAGCTTCATTCAGAAACACGGCCATGGTAACTGGAGGGCTCTCCCTAAACAAGCAGGTCTACTGCGATGTGGGAAAAGTTGTCGTTTGAGATGGATTAACTACCTTCGGCCTGATCTGAAGCGAGGTAACTTCACAAAAGAGGAAGAGGAGTCCATAATTAAGCTACATGAAACTTGGGGAAACAAGTGGTCCAAGATTGCATCCCATTTTCCTGGAAGAACAGACAACGAAATCAAGAATGTGTGGAACACTCATTTGCGGAAGAGATTGGCTTTGAAGAAATCTTGTGGAGATGATCAATCAAAGGAGTCATCTTCCATAACTTCCTCTTCCTCATCTTCTTCTAGTGCTTCATTTCAGTTGTCTAGAGGAAAACCAAGTGTAGGAGCCACCGCTGAATTCGAGAATCAATCTAACCAAGAAAGCAACATGTCCAAAAACCGGAACGACTGTGAACTGCCCAATTCGACGACAATCCAAGAAAAACTTGATCAAAATATACCAATGGAAGTAACAAATCAAGTTAGGGTTGATGATGCTAAAGGCGTGAAAACGTTGACCATAAGTTCTTCCTTTTCATCTCATGACTCCTCAAACGGCTCAAGTTCCAGCCAAGGCGGCGGTATTTCAAGGCCAGATGATTTGGTGTTTGACTTTAAAGGAGCTTATGAACCTCAAATTGCAGACAAGGAAGTCTTTGAAATTCCATTCGAGTCTGACCATGATTTCTGGAACATGTTAGATGAGTTTGTGCCCTTTCAGTCAAACCCTGAACCTCTATTACCTCAGGCGGATCAGACCTACCAGAGCTCAAACTTAGAGCTAGTTGAAAGTGGAAAGTGGCTCAGTTACTTGGAGAGTGAGCTTGGCCTTGAGGATTCAACAAAGACCGAGATCAACAACCAGGATTTTGTGATGAAGGATGCAACTGAACAATTAGTGCCGGAGAAGTACTGTGACAAGTTGCCAATGCCTGCAGAAATTGACCAGGACATGAATGATTACTTCGGAATGTGGCCTTCTTGGCCAGACAACTCTGGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

377

Amino Acids

42.48

Weight (kDa)

5.21

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 64	3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	20 - 79	1.3e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	70 - 115	3.8e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 117	1.5e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003068)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32950
rosa_chinensis	RchiOBHm_Chr2g0142471 RchiOBHm_Chr2g0142501 RchiOBHm_Chr5g0039751 RchiOBHm_Chr6g0311841 RchiOBHm_Chr6g0311851
rosa_laevigata	RLG00000019960 RLG00000033940
rosa_multiflora	Rmu_sc0000103.1_g000015 Rmu_sc0001211.1_g000005 Rmu_sc0002888.1_g000048 Rmu_sc0002888.1_g000051 Rmu_sc0007525.1_g000001 Rmu_sc0007525.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041480 Rroxscaffold_7G00157270 Rroxscaffold_7G00157280
rosa_rugosa	Rorug02G0373000 Rorug05G0182000 Rorug06G0133900 Rorug06G0391000 Rorug06G0391200
rosa_samantha	Rh2BG434300 Rh2BG434500 Rh2CG411200 Rh2DG444300 Rh2DG444500 Rh5AG268400 Rh5CG305200 Rh6AG507300 Rh6AG507400 Rh6BG518300 Rh6BG518600
rosa_wichuraiana	Rw2G034780 Rw2G034830 Rw5G025080 Rw6G044140 Rw6G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	779
Acc36I	ACCTGC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	145
AciI	CCGC	5 cut(s)	346, 480, 705, 708, 878
AclI	AACGTT	1 cut(s)	641
AclWI	GGATC	1 cut(s)	888
AcoI	YGGCCR	2 cut(s)	106, 1112
AcsI	RAATTY	2 cut(s)	485, 789
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	1040
AfiI	CCNNNNNNNGG	2 cut(s)	470, 528
AflIII	ACRYGT	2 cut(s)	516, 822
AgsI	TTSAA	5 cut(s)	364, 717, 788, 917, 969
AjnI	CCWGG	4 cut(s)	56, 298, 990, 1074
AluBI	AGCT	6 cut(s)	90, 250, 752, 897, 910, 952
AluI	AGCT	6 cut(s)	90, 250, 752, 897, 910, 952
Alw21I	GWGCWC	1 cut(s)	899
AlwI	GGATC	1 cut(s)	888
AoxI	GGCC	6 cut(s)	106, 194, 719, 955, 1103, 1112
ApoI	RAATTY	2 cut(s)	485, 789
AspS9I	GGNCC	2 cut(s)	53, 276
AvaII	GGWCC	2 cut(s)	53, 276
AxyI	CCTNAGG	1 cut(s)	873
BaeGI	GKGCMC	1 cut(s)	843
BalI	TGGCCA	1 cut(s)	1114
BanII	GRGCYC	2 cut(s)	127, 899
Bbv12I	GWGCWC	1 cut(s)	899
BccI	CCATC	1 cut(s)	171
BceAI	ACGGC	2 cut(s)	121, 700
BciT130I	CCWGG	4 cut(s)	58, 300, 992, 1076
BclI	TGATCA	2 cut(s)	382, 577
BfaI	CTAG	3 cut(s)	432, 453, 911
BfmI	CTRYAG	1 cut(s)	1062
BfuAI	ACCTGC	1 cut(s)	131
BglI	GCCNNNNNGGC	2 cut(s)	705, 1111
BisI	GCNGC	1 cut(s)	706
BlsI	GCNGC	1 cut(s)	707
BmcAI	AGTACT	1 cut(s)	1040
Bme1390I	CCNGG	4 cut(s)	58, 300, 992, 1076
Bme18I	GGWCC	2 cut(s)	53, 276
BmgT120I	GGNCC	2 cut(s)	53, 276
BmiI	GGNNCC	2 cut(s)	55, 475
BmrFI	CCNGG	4 cut(s)	58, 300, 992, 1076
BmsI	GCATC	3 cut(s)	296, 613, 1000
BpmI	CTGGAG	2 cut(s)	79, 139
BpuEI	CTTGAG	3 cut(s)	97, 673, 980
BsaJI	CCNNGG	3 cut(s)	56, 109, 700
BsaWI	WCCGGW	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 528
Bse1I	ACTGG	1 cut(s)	122
Bse21I	CCTNAGG	1 cut(s)	873
BseBI	CCWGG	4 cut(s)	58, 300, 992, 1076
BseDI	CCNNGG	3 cut(s)	56, 109, 700
BseGI	GGATG	2 cut(s)	287, 1015
BseLI	CCNNNNNNNGG	2 cut(s)	470, 528
BseMII	CTCAG	3 cut(s)	60, 887, 946
BseNI	ACTGG	1 cut(s)	122
BseRI	GAGGAG	2 cut(s)	248, 667
BseSI	GKGCMC	1 cut(s)	843
BshFI	GGCC	6 cut(s)	108, 196, 721, 957, 1105, 1114
BsiHKAI	GWGCWC	1 cut(s)	899
BsiSI	CCGG	2 cut(s)	529, 1031
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	470, 528
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	6 cut(s)	108, 196, 721, 957, 1105, 1114
Bsp1286I	GDGCHC	3 cut(s)	127, 843, 899
Bsp143I	GATC	5 cut(s)	199, 382, 577, 880, 981
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	5 cut(s)	346, 480, 705, 708, 878
BspANI	GGCC	6 cut(s)	108, 196, 721, 957, 1105, 1114
BspCNI	CTCAG	3 cut(s)	61, 886, 945
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	55, 475
BspMAI	CTGCAG	1 cut(s)	1066
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	888
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	56, 109, 700
BssMI	GATC	5 cut(s)	199, 382, 577, 880, 981
BssT1I	CCWWGG	2 cut(s)	109, 700
Bst2UI	CCWGG	4 cut(s)	58, 300, 992, 1076
Bst4CI	ACNGT	2 cut(s)	539, 1043
Bst6I	CTCTTC	4 cut(s)	41, 225, 344, 421
BstC8I	GCNNGC	1 cut(s)	1062
BstDEI	CTNAG	4 cut(s)	69, 873, 904, 932
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	287, 1015
BstKTI	GATC	5 cut(s)	202, 385, 580, 883, 984
BstMBI	GATC	5 cut(s)	199, 382, 577, 880, 981
BstMWI	GCNNNNNNNGC	2 cut(s)	705, 1111
BstNI	CCWGG	4 cut(s)	58, 300, 992, 1076
BstNSI	RCATGY	2 cut(s)	520, 826
BstSCI	CCNGG	4 cut(s)	56, 298, 990, 1074
BstSFI	CTRYAG	1 cut(s)	1062
BstSLI	GKGCMC	1 cut(s)	843
BstXI	CCANNNNNNTGG	1 cut(s)	299
Bsu36I	CCTNAGG	1 cut(s)	873
BsuRI	GGCC	6 cut(s)	108, 196, 721, 957, 1105, 1114
BtgI	CCRYGG	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	287, 1015
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	1062
CciI	TCATGA	1 cut(s)	670
Cfr13I	GGNCC	2 cut(s)	53, 276
Csp6I	GTAC	1 cut(s)	1039
CviAII	CATG	8 cut(s)	24, 110, 254, 517, 671, 809, 823, 1081
CviQI	GTAC	1 cut(s)	1039
DdeI	CTNAG	4 cut(s)	69, 873, 904, 932
DpnI	GATC	5 cut(s)	201, 384, 579, 882, 983
DpnII	GATC	5 cut(s)	199, 382, 577, 880, 981
DraI	TTTAAA	1 cut(s)	745
DrdI	GACNNNNNNGTC	1 cut(s)	779
DseDI	GACNNNNNNGTC	1 cut(s)	779
EaeI	YGGCCR	2 cut(s)	106, 1112
Eam1104I	CTCTTC	4 cut(s)	41, 225, 344, 421
EarI	CTCTTC	4 cut(s)	41, 225, 344, 421
EciI	GGCGGA	1 cut(s)	893
Ecl136II	GAGCTC	1 cut(s)	897
Eco130I	CCWWGG	2 cut(s)	109, 700
Eco24I	GRGCYC	2 cut(s)	127, 899
Eco47I	GGWCC	2 cut(s)	53, 276
Eco53kI	GAGCTC	1 cut(s)	897
Eco57I	CTGAAG	1 cut(s)	224
Eco81I	CCTNAGG	1 cut(s)	873
EcoICRI	GAGCTC	1 cut(s)	897
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	485
EcoRII	CCWGG	4 cut(s)	56, 298, 990, 1074
EcoT14I	CCWWGG	2 cut(s)	109, 700
EcoT38I	GRGCYC	2 cut(s)	127, 899
ErhI	CCWWGG	2 cut(s)	109, 700
FaeI	CATG	8 cut(s)	27, 113, 257, 520, 674, 812, 826, 1084
FalI	AAGNNNNNCTT	4 cut(s)	558, 590, 767, 799
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	8 cut(s)	23, 109, 253, 516, 670, 808, 822, 1080
FbaI	TGATCA	2 cut(s)	382, 577
FblI	GTMKAC	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	706
FokI	GGATG	2 cut(s)	274, 1022
FriOI	GRGCYC	2 cut(s)	127, 899
Fsp4HI	GCNGC	1 cut(s)	706
FspBI	CTAG	3 cut(s)	432, 453, 911
GluI	GCNGC	1 cut(s)	706
GsuI	CTGGAG	2 cut(s)	79, 139
HaeIII	GGCC	6 cut(s)	108, 196, 721, 957, 1105, 1114
HapII	CCGG	2 cut(s)	529, 1031
Hin1II	CATG	8 cut(s)	27, 113, 257, 520, 674, 812, 826, 1084
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HinfI	GANTC	7 cut(s)	61, 236, 395, 493, 674, 800, 965
HpaII	CCGG	2 cut(s)	529, 1031
Hpy166II	GTNNAC	3 cut(s)	146, 542, 645
Hpy188I	TCNGA	6 cut(s)	70, 99, 204, 805, 885, 1097
Hpy188III	TCNNGA	5 cut(s)	322, 453, 490, 671, 817
Hpy8I	GTNNAC	3 cut(s)	146, 542, 645
Hpy99I	CGWCG	1 cut(s)	559
HpyAV	CCTTC	5 cut(s)	4, 75, 200, 1000, 1116
HpyCH4III	ACNGT	2 cut(s)	539, 1043
HpyCH4IV	ACGT	1 cut(s)	641
HpyCH4V	TGCA	4 cut(s)	287, 770, 1013, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	705, 1111
HpyF3I	CTNAG	4 cut(s)	69, 873, 904, 932
HpySE526I	ACGT	1 cut(s)	641
Hsp92II	CATG	8 cut(s)	27, 113, 257, 520, 674, 812, 826, 1084
Ksp22I	TGATCA	2 cut(s)	382, 577
Kzo9I	GATC	5 cut(s)	199, 382, 577, 880, 981
LmnI	GCTCC	2 cut(s)	473, 749
LweI	GCATC	3 cut(s)	296, 613, 1000
MaeI	CTAG	3 cut(s)	432, 453, 911
MaeII	ACGT	1 cut(s)	641
MaeIII	GTNAC	5 cut(s)	113, 212, 598, 935, 1043
MalI	GATC	5 cut(s)	201, 384, 579, 882, 983
MboI	GATC	5 cut(s)	199, 382, 577, 880, 981
MhlI	GDGCHC	3 cut(s)	127, 843, 899
MlsI	TGGCCA	1 cut(s)	1114
MluCI	AATT	7 cut(s)	243, 485, 550, 765, 789, 1022, 1068
MluNI	TGGCCA	1 cut(s)	1114
MlyI	GAGTC	5 cut(s)	70, 245, 404, 668, 809
Mox20I	TGGCCA	1 cut(s)	1114
MscI	TGGCCA	1 cut(s)	1114
MseI	TTAA	3 cut(s)	183, 246, 744
MslI	CAYNNNNRTG	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	1114
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	2 cut(s)	529, 1031
MspR9I	CCNGG	4 cut(s)	58, 300, 992, 1076
MvaI	CCWGG	4 cut(s)	58, 300, 992, 1076
MwoI	GCNNNNNNNGC	2 cut(s)	705, 1111
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	5 cut(s)	199, 382, 577, 880, 981
NlaIII	CATG	8 cut(s)	27, 113, 257, 520, 674, 812, 826, 1084
NlaIV	GGNNCC	2 cut(s)	55, 475
NmuCI	GTSAC	1 cut(s)	1043
NspI	RCATGY	2 cut(s)	520, 826
PagI	TCATGA	1 cut(s)	670
PciI	ACATGT	2 cut(s)	516, 822
PfeI	GAWTC	2 cut(s)	493, 965
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	707
PleI	GAGTC	5 cut(s)	69, 244, 403, 668, 808
PpsI	GAGTC	5 cut(s)	69, 244, 403, 668, 808
PpuMI	RGGWCCY	1 cut(s)	53
PscI	ACATGT	2 cut(s)	516, 822
Psp124BI	GAGCTC	1 cut(s)	899
Psp1406I	AACGTT	1 cut(s)	641
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	4 cut(s)	56, 298, 990, 1074
PspGI	CCWGG	4 cut(s)	56, 298, 990, 1074
PspN4I	GGNNCC	2 cut(s)	55, 475
PspPI	GGNCC	2 cut(s)	53, 276
PspPPI	RGGWCCY	1 cut(s)	53
PsrI	GAACNNNNNNTAC	2 cut(s)	852, 884
PstI	CTGCAG	1 cut(s)	1066
RsaI	GTAC	1 cut(s)	1040
RsaNI	GTAC	1 cut(s)	1039
RseI	CAYNNNNRTG	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	899
SaqAI	TTAA	3 cut(s)	183, 246, 744
SatI	GCNGC	1 cut(s)	706
Sau3AI	GATC	5 cut(s)	199, 382, 577, 880, 981
Sau96I	GGNCC	2 cut(s)	53, 276
ScaI	AGTACT	1 cut(s)	1040
SchI	GAGTC	5 cut(s)	70, 245, 404, 668, 809
ScrFI	CCNGG	4 cut(s)	58, 300, 992, 1076
SduI	GDGCHC	3 cut(s)	127, 843, 899
SfaNI	GCATC	3 cut(s)	296, 613, 1000
SfcI	CTRYAG	1 cut(s)	1062
SfiI	GGCCNNNNNGGCC	1 cut(s)	1111
SinI	GGWCC	2 cut(s)	53, 276
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	3 cut(s)	76, 688, 959
SmoI	CTYRAG	3 cut(s)	76, 688, 959
Sse9I	AATT	7 cut(s)	243, 485, 550, 765, 789, 1022, 1068
SsiI	CCGC	5 cut(s)	346, 480, 705, 708, 878
SspMI	CTAG	3 cut(s)	432, 453, 911
SstI	GAGCTC	1 cut(s)	899
StyD4I	CCNGG	4 cut(s)	56, 298, 990, 1074
StyI	CCWWGG	2 cut(s)	109, 700
TaaI	ACNGT	2 cut(s)	539, 1043
TaiI	ACGT	1 cut(s)	644
TaqI	TCGA	3 cut(s)	489, 554, 798
TaqII	GACCGA	1 cut(s)	992
TasI	AATT	7 cut(s)	243, 485, 550, 765, 789, 1022, 1068
TatI	WGTACW	1 cut(s)	1038
TauI	GCSGC	1 cut(s)	708
TfiI	GAWTC	2 cut(s)	493, 965
Tru1I	TTAA	3 cut(s)	183, 246, 744
Tru9I	TTAA	3 cut(s)	183, 246, 744
TseFI	GTSAC	1 cut(s)	1043
Tsp45I	GTSAC	1 cut(s)	1043
TspDTI	ATGAA	7 cut(s)	82, 270, 429, 654, 771, 1019, 1097
VpaK11BI	GGWCC	2 cut(s)	53, 276
XapI	RAATTY	2 cut(s)	485, 789
XbaI	TCTAGA	1 cut(s)	452
XceI	RCATGY	2 cut(s)	520, 826
XmiI	GTMKAC	1 cut(s)	145
XspI	CTAG	3 cut(s)	432, 453, 911
ZrmI	AGTACT	1 cut(s)	1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.