Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002046

Physical Location & Seq

Genomic Coordinates Forward (+)

13490449 .. 13493176

Gene Structure 2728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGATGATACGCGCAGAGTTCCCTTGCTGAGCATCAAGGCGGAGCCGGAACGCGACTATGCTCCGGTGAAGACCTTCGGGGAGGGCGTGTCGGTTTGTTGGAAGGAGACTGTGAAGCTGTGGAAAGTTGCAGCTCCGGTGGCTTTTACGAGTCTCTTTCAGTTCCTCATCCAGTCCACCACCACCATCTTCGTCGGACATCTCGGAGATCTTGAGCTCTCTGCTATTTCCCTCGCTCATAATGTCATCAACGCCATCGCCTTTGGCTTCCTGATAGGTATGGCAAATGCACTTGGAACGCTTTGTGGACAAGCTTATGGTGCAGGCCAAATTGACTCACTTGGTATCTATATGCAGCGCTCATGCATCATCCTGACCATCACTTGTTTTCTCCTCTCATCACTTTACATTTTCACCACTCCATTCCTCAAGATTTTAGGCCAACAAGACAGCATAGCCGAGTTTGCTGGAAACTATTGTCTGTTGATAATCCCTCAGATGTTCGCCTTTGCCATCAATTTGCCCACCCAGAAGTTTCTTCAGGCTCAGAGCAAGTGTACTCGGCTGGGGGTCAATGGTGCAGCTGTAGCTTATAACATCACATTCTGGGAAGTTGCAGTTGGTCAGTTTGTGTATGCTGTATTTTTGTGCAAGGAAGGTTGGAATGGATTTTCATGGTTAGCATTCAAAGACATTTGGGCATTTGCTAAGCTGTCCCTTGCCTCATGTATGATGATTTGCCTAGAGAGGTGGTACCACATGAGTATGAACATTCTCGCCGGTCAACTTGAGAATGCAGTGATTGCCCTTGGTTCCTTTTCCATATGCTTGAACTTTCAAAGTTGGGAAACCATGATTTTGGTTGGACTGAATACTGCTATAAGCATTCGAGTCTCAAATGAACTTGGAATGGGGCACCCAAGAGCGGCCAAATACTCTATCTGTGTTGCAGTCTTGCTATCTCTCGTTGTTGGGATTGTGTCTATGACATCTATCTTCTTAAGTGGAGACCACATTGCCAGTGTTTTCACAGACAGCAAAGTTATGCAACGAGCTGTTGCTCATTTAGCATACTTTCTCGGCGCAGCCATGCTTCTTAATAGTGTTGCAGAAGTTTTGACAGGGGTTGCAGTTGGAGGTGGATGGCAAGTGATGGTAGCTTATATAAATTTCGCTGCTTATTATTTATTTGGTCTCCCTTTGGCAATATTTCTGGGATTTAAAGCAAACTTGGGTCCAATGGGACTGTATGGTGGCATAATAAGTGGAAGCGCTCTACAGATCTTGTTCTTATTGATTATGACTTCCAGAACCAACTGGGACACTGAGGTGGAGCAAACGACGAAGCGCATAAAGAAATGGGGGAGCAAAGAAATAAGAACTGAGAAGAAGATGGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

468

Amino Acids

51.16

Weight (kDa)

8.37

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	46 - 186	2.4e-29	MatE
MatE	PF01554	242 - 403	1e-22	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15630 FvH4_7g30024 FvH4_7g30070 FvH4_7g30070 FvH4_7g30070 FvH4_7g30072 FvH4_7g30073
malus_domestica	MD01G1206400.v1.1 MD07G1277100.v1.1
pyrus_communis	pycom01g21630 pycom07g25200
rosa_chinensis	RchiOBHm_Chr1g0378011 RchiOBHm_Chr1g0378051
rosa_laevigata	RLG00000026477 RLG00000026478
rosa_multiflora	Rmu_co8476257.1_g000001 Rmu_sc0002068.1_g000001 Rmu_sc0002068.1_g000002 Rmu_sc0005268.1_g000013
rosa_roxburghii	Rroxscaffold_156G00440340 Rroxscaffold_156G00440350 Rroxscaffold_156G00440370 Rroxscaffold_156G00440410 Rroxscaffold_4G00280820 Rroxscaffold_4G00280830 Rroxscaffold_4G00280840
rosa_samantha	Rh1AG424600 Rh1AG425000 Rh1AG425100 Rh1BG383700 Rh1BG384300 Rh1BG384600 Rh1CG397400 Rh1CG398000 Rh1CG398100 Rh1CG398200 Rh1CG398600 Rh1DG414700 Rh1DG415500 Rh1DG415600 Rh1DG415700 Rh1DG415900
rosa_wichuraiana	Rw0G014950 Rw1G037320 Rw1G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	594
Acc65I	GGTACC	1 cut(s)	753
AccB1I	GGYRCC	2 cut(s)	753, 915
AccBSI	CCGCTC	1 cut(s)	926
AccII	CGCG	2 cut(s)	13, 54
AciI	CCGC	2 cut(s)	41, 926
AcoI	YGGCCR	1 cut(s)	927
AcsI	RAATTY	1 cut(s)	1168
AcuI	CTGAAG	1 cut(s)	524
AfaI	GTAC	2 cut(s)	559, 755
AfeI	AGCGCT	2 cut(s)	359, 1273
AfiI	CCNNNNNNNGG	1 cut(s)	925
AflII	CTTAAG	1 cut(s)	1000
AgsI	TTSAA	3 cut(s)	688, 832, 839
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
AleI	CACNNNNGTG	1 cut(s)	1328
AluBI	AGCT	9 cut(s)	118, 134, 217, 314, 584, 590, 712, 1055, 1160
AluI	AGCT	9 cut(s)	118, 134, 217, 314, 584, 590, 712, 1055, 1160
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	5 cut(s)	101, 158, 898, 1002, 1199
Aor51HI	AGCGCT	2 cut(s)	359, 1273
AoxI	GGCC	3 cut(s)	325, 439, 927
ApeKI	GCWGC	5 cut(s)	131, 355, 581, 1085, 1175
ApoI	RAATTY	1 cut(s)	1168
Asp700I	GAANNNNTTC	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	753
AspLEI	GCGC	5 cut(s)	15, 360, 1085, 1274, 1350
AspS9I	GGNCC	1 cut(s)	1235
AsuHPI	GGTGA	2 cut(s)	79, 406
AvaII	GGWCC	1 cut(s)	1235
BaeGI	GKGCMC	1 cut(s)	918
BanI	GGYRCC	2 cut(s)	753, 915
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	5 cut(s)	143, 367, 593, 1097, 1162
BccI	CCATC	7 cut(s)	194, 263, 386, 521, 1137, 1147, 1387
BcoDI	GTCTC	5 cut(s)	101, 158, 898, 1002, 1199
BfaI	CTAG	1 cut(s)	743
BfmI	CTRYAG	2 cut(s)	585, 1277
BfoI	RGCGCY	2 cut(s)	361, 1275
BfrI	CTTAAG	1 cut(s)	1000
BglII	AGATCT	2 cut(s)	208, 1281
BisI	GCNGC	6 cut(s)	132, 356, 582, 927, 1086, 1176
BlpI	GCTNAGC	2 cut(s)	29, 708
BlsI	GCNGC	6 cut(s)	133, 357, 583, 928, 1087, 1177
Bme18I	GGWCC	1 cut(s)	1235
BmgT120I	GGNCC	1 cut(s)	1235
BmiI	GGNNCC	5 cut(s)	45, 755, 814, 917, 1236
BmrI	ACTGGG	1 cut(s)	1327
BmsI	GCATC	2 cut(s)	42, 375
BmuI	ACTGGG	1 cut(s)	1327
BpiI	GAAGAC	1 cut(s)	77
Bpu1102I	GCTNAGC	2 cut(s)	29, 708
BpuEI	CTTGAG	3 cut(s)	233, 413, 809
BsaI	GGTCTC	2 cut(s)	1002, 1199
BsaJI	CCNNGG	1 cut(s)	808
BsaWI	WCCGGW	2 cut(s)	64, 136
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	925
Bse118I	RCCGGY	1 cut(s)	779
Bse1I	ACTGG	3 cut(s)	172, 1020, 1322
Bse3DI	GCAATG	1 cut(s)	1014
BseDI	CCNNGG	1 cut(s)	808
BseGI	GGATG	4 cut(s)	10, 168, 369, 1148
BseLI	CCNNNNNNNGG	1 cut(s)	925
BseMI	GCAATG	1 cut(s)	1014
BseMII	CTCAG	5 cut(s)	20, 509, 560, 1317, 1374
BseNI	ACTGG	3 cut(s)	172, 1020, 1322
BseRI	GAGGAG	1 cut(s)	383
BseSI	GKGCMC	1 cut(s)	918
BseXI	GCAGC	5 cut(s)	143, 367, 593, 1097, 1162
BseYI	CCCAGC	1 cut(s)	565
BsgI	GTGCAG	2 cut(s)	342, 600
Bsh1236I	CGCG	2 cut(s)	13, 54
BshFI	GGCC	3 cut(s)	327, 441, 929
BshNI	GGYRCC	2 cut(s)	753, 915
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	4 cut(s)	47, 65, 137, 780
BslFI	GGGAC	3 cut(s)	700, 1257, 1334
BslI	CCNNNNNNNGG	1 cut(s)	925
BsmAI	GTCTC	5 cut(s)	101, 158, 898, 1002, 1199
BsmFI	GGGAC	3 cut(s)	700, 1257, 1334
BsmI	GAATGC	3 cut(s)	683, 799, 885
BsnI	GGCC	3 cut(s)	327, 441, 929
Bso31I	GGTCTC	2 cut(s)	1002, 1199
Bsp1286I	GDGCHC	2 cut(s)	219, 918
Bsp143I	GATC	2 cut(s)	208, 1281
Bsp1720I	GCTNAGC	2 cut(s)	29, 708
BspACI	CCGC	2 cut(s)	41, 926
BspANI	GGCC	3 cut(s)	327, 441, 929
BspCNI	CTCAG	5 cut(s)	21, 508, 559, 1318, 1375
BspFNI	CGCG	2 cut(s)	13, 54
BspLI	GGNNCC	5 cut(s)	45, 755, 814, 917, 1236
BspT107I	GGYRCC	2 cut(s)	753, 915
BspTI	CTTAAG	1 cut(s)	1000
BspTNI	GGTCTC	2 cut(s)	1002, 1199
BsrBI	CCGCTC	1 cut(s)	926
BsrDI	GCAATG	1 cut(s)	1014
BsrFI	RCCGGY	1 cut(s)	779
BsrI	ACTGG	3 cut(s)	172, 1020, 1322
BssAI	RCCGGY	1 cut(s)	779
BssECI	CCNNGG	1 cut(s)	808
BssMI	GATC	2 cut(s)	208, 1281
BssT1I	CCWWGG	1 cut(s)	808
Bst4CI	ACNGT	2 cut(s)	112, 1248
BstAFI	CTTAAG	1 cut(s)	1000
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	6 cut(s)	29, 495, 546, 708, 1326, 1383
BstF5I	GGATG	4 cut(s)	10, 168, 369, 1148
BstFNI	CGCG	2 cut(s)	13, 54
BstH2I	RGCGCY	2 cut(s)	361, 1275
BstHHI	GCGC	5 cut(s)	15, 360, 1085, 1274, 1350
BstKTI	GATC	2 cut(s)	211, 1284
BstMAI	GTCTC	5 cut(s)	101, 158, 898, 1002, 1199
BstMBI	GATC	2 cut(s)	208, 1281
BstMWI	GCNNNNNNNGC	6 cut(s)	140, 320, 464, 587, 803, 1067
BstSFI	CTRYAG	2 cut(s)	585, 1277
BstSLI	GKGCMC	1 cut(s)	918
BstUI	CGCG	2 cut(s)	13, 54
BstV1I	GCAGC	5 cut(s)	143, 367, 593, 1097, 1162
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	2 cut(s)	208, 1281
BstXI	CCANNNNNNTGG	1 cut(s)	859
BstYI	RGATCY	2 cut(s)	208, 1281
BsuRI	GGCC	3 cut(s)	327, 441, 929
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	4 cut(s)	10, 168, 369, 1148
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	3 cut(s)	804, 1027, 1323
Cac8I	GCNNGC	1 cut(s)	325
CfoI	GCGC	5 cut(s)	15, 360, 1085, 1274, 1350
Cfr10I	RCCGGY	1 cut(s)	779
Cfr13I	GGNCC	1 cut(s)	1235
Csp6I	GTAC	2 cut(s)	558, 754
CviAII	CATG	6 cut(s)	363, 675, 726, 760, 853, 1090
CviQI	GTAC	2 cut(s)	558, 754
DdeI	CTNAG	6 cut(s)	29, 495, 546, 708, 1326, 1383
DpnI	GATC	2 cut(s)	210, 1283
DpnII	GATC	2 cut(s)	208, 1281
DraI	TTTAAA	1 cut(s)	1222
EaeI	YGGCCR	1 cut(s)	927
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	808
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	2 cut(s)	1002, 1199
Eco47I	GGWCC	1 cut(s)	1235
Eco47III	AGCGCT	2 cut(s)	359, 1273
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	524
EcoICRI	GAGCTC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	808
EcoT22I	ATGCAT	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	808
FaeI	CATG	6 cut(s)	366, 678, 729, 763, 856, 1093
FaqI	GGGAC	3 cut(s)	700, 1257, 1334
FatI	CATG	6 cut(s)	362, 674, 725, 759, 852, 1089
FauNDI	CATATG	1 cut(s)	824
Fnu4HI	GCNGC	6 cut(s)	132, 356, 582, 927, 1086, 1176
FokI	GGATG	4 cut(s)	17, 155, 356, 1155
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	6 cut(s)	132, 356, 582, 927, 1086, 1176
FspBI	CTAG	1 cut(s)	743
GlaI	GCGC	5 cut(s)	14, 359, 1084, 1273, 1349
GluI	GCNGC	6 cut(s)	132, 356, 582, 927, 1086, 1176
GsaI	CCCAGC	1 cut(s)	569
HaeII	RGCGCY	2 cut(s)	361, 1275
HaeIII	GGCC	3 cut(s)	327, 441, 929
HapII	CCGG	4 cut(s)	47, 65, 137, 780
HhaI	GCGC	5 cut(s)	15, 360, 1085, 1274, 1350
Hin1II	CATG	6 cut(s)	366, 678, 729, 763, 856, 1093
Hin6I	GCGC	5 cut(s)	13, 358, 1083, 1272, 1348
HinP1I	GCGC	5 cut(s)	13, 358, 1083, 1272, 1348
HincII	GTYRAC	1 cut(s)	785
HindII	GTYRAC	1 cut(s)	785
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	3 cut(s)	151, 335, 891
HpaII	CCGG	4 cut(s)	47, 65, 137, 780
HphI	GGTGA	2 cut(s)	79, 406
Hpy166II	GTNNAC	4 cut(s)	177, 308, 558, 785
Hpy188I	TCNGA	4 cut(s)	197, 206, 498, 549
Hpy188III	TCNNGA	5 cut(s)	212, 271, 373, 430, 1308
Hpy8I	GTNNAC	4 cut(s)	177, 308, 558, 785
Hpy99I	CGWCG	2 cut(s)	197, 1345
HpyAV	CCTTC	3 cut(s)	85, 97, 650
HpyCH4III	ACNGT	2 cut(s)	112, 1248
HpyF10VI	GCNNNNNNNGC	6 cut(s)	140, 320, 464, 587, 803, 1067
HpyF3I	CTNAG	6 cut(s)	29, 495, 546, 708, 1326, 1383
Hsp92II	CATG	6 cut(s)	366, 678, 729, 763, 856, 1093
HspAI	GCGC	5 cut(s)	13, 358, 1083, 1272, 1348
KpnI	GGTACC	1 cut(s)	757
Kzo9I	GATC	2 cut(s)	208, 1281
LmnI	GCTCC	5 cut(s)	43, 67, 139, 1333, 1365
Lsp1109I	GCAGC	5 cut(s)	143, 367, 593, 1097, 1162
LweI	GCATC	2 cut(s)	42, 375
MaeI	CTAG	1 cut(s)	743
MalI	GATC	2 cut(s)	210, 1283
MbiI	CCGCTC	1 cut(s)	926
MboI	GATC	2 cut(s)	208, 1281
MboII	GAAGA	6 cut(s)	82, 181, 530, 988, 1399, 1402
MflI	RGATCY	2 cut(s)	208, 1281
MhlI	GDGCHC	2 cut(s)	219, 918
MluCI	AATT	3 cut(s)	330, 517, 1168
MlyI	GAGTC	3 cut(s)	160, 329, 900
MmeI	TCCRAC	5 cut(s)	80, 175, 641, 844, 1114
Mph1103I	ATGCAT	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	3 cut(s)	1001, 1098, 1221
MslI	CAYNNNNRTG	2 cut(s)	764, 1328
MspA1I	CMGCKG	1 cut(s)	584
MspCI	CTTAAG	1 cut(s)	1000
MspI	CCGG	4 cut(s)	47, 65, 137, 780
Mva1269I	GAATGC	3 cut(s)	683, 799, 885
MvnI	CGCG	2 cut(s)	13, 54
MwoI	GCNNNNNNNGC	6 cut(s)	140, 320, 464, 587, 803, 1067
NdeI	CATATG	1 cut(s)	824
NdeII	GATC	2 cut(s)	208, 1281
NlaIII	CATG	6 cut(s)	366, 678, 729, 763, 856, 1093
NlaIV	GGNNCC	5 cut(s)	45, 755, 814, 917, 1236
NmeAIII	GCCGAG	3 cut(s)	484, 541, 1059
NsiI	ATGCAT	1 cut(s)	368
OliI	CACNNNNGTG	1 cut(s)	1328
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	3 cut(s)	683, 799, 885
PdmI	GAANNNNTTC	1 cut(s)	74
PkrI	GCNGC	6 cut(s)	133, 357, 583, 928, 1087, 1177
PleI	GAGTC	3 cut(s)	159, 329, 899
PpsI	GAGTC	3 cut(s)	159, 329, 899
PsiI	TTATAA	1 cut(s)	594
Psp124BI	GAGCTC	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	565
PspN4I	GGNNCC	5 cut(s)	45, 755, 814, 917, 1236
PspPI	GGNCC	1 cut(s)	1235
PsuI	RGATCY	2 cut(s)	208, 1281
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	2 cut(s)	559, 755
RsaNI	GTAC	2 cut(s)	558, 754
RseI	CAYNNNNRTG	2 cut(s)	764, 1328
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	1001, 1098, 1221
SatI	GCNGC	6 cut(s)	132, 356, 582, 927, 1086, 1176
Sau3AI	GATC	2 cut(s)	208, 1281
Sau96I	GGNCC	1 cut(s)	1235
SchI	GAGTC	3 cut(s)	160, 329, 900
SduI	GDGCHC	2 cut(s)	219, 918
SfaNI	GCATC	2 cut(s)	42, 375
SfcI	CTRYAG	2 cut(s)	585, 1277
SinI	GGWCC	1 cut(s)	1235
SmiMI	CAYNNNNRTG	2 cut(s)	764, 1328
SmlI	CTYRAG	4 cut(s)	212, 428, 788, 1000
SmoI	CTYRAG	4 cut(s)	212, 428, 788, 1000
Sse9I	AATT	3 cut(s)	330, 517, 1168
SsiI	CCGC	2 cut(s)	41, 926
SspI	AATATT	1 cut(s)	1209
SspMI	CTAG	1 cut(s)	743
SstI	GAGCTC	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	808
TaaI	ACNGT	2 cut(s)	112, 1248
TaqI	TCGA	1 cut(s)	889
TasI	AATT	3 cut(s)	330, 517, 1168
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	1 cut(s)	929
Tru1I	TTAA	3 cut(s)	1001, 1098, 1221
Tru9I	TTAA	3 cut(s)	1001, 1098, 1221
TscAI	CASTG	3 cut(s)	804, 1027, 1330
TseI	GCWGC	5 cut(s)	131, 355, 581, 1085, 1175
TspDTI	ATGAA	3 cut(s)	663, 782, 915
TspRI	CASTG	3 cut(s)	804, 1027, 1330
Vha464I	CTTAAG	1 cut(s)	1000
VpaK11BI	GGWCC	1 cut(s)	1235
XapI	RAATTY	1 cut(s)	1168
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	1 cut(s)	743
Zsp2I	ATGCAT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.