Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8476257.1

Orthogroup ID

OG0002046

Physical Location & Seq

Genomic Coordinates Reverse (-)

254 .. 1872

Gene Structure 1619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8476257.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atggcaattgcacttggaactctttgtggtcaagcatatggagcaggccaagtagactcacttggtatctatatgcagcgctcctgcattatcctagccatcacttgtttcctcctttcatcactttacattttcgccactccattcctaaagattttaggccaagaagacaatatagccgagtttgctggaaaatatagtctgttgataatccctcagatgttctccttttccatcaatttgcccacccaaaagttcctacaggctcagagcaaggtggggatcatcacatggatctcctttgcggctctagtcacacacacaggatttctgtatctcttcattagcgtactcgactgggggctgaatggtgcagctgtagcttataatatcacatattgggaagttgcaatttgtcagtttgtgtatgctgtatttttgtgcaaggaaggttggactggattttcatggttggcatttaaagacatgtgggcttttgctaggctgtcccttgcctcatgtatgatgttttgcctggagatgtggtacactatgagtctgaacattcttgccggtcaacttgaaaatgcagtgattgctcttggttccttttctatatgcttgaactttcagagttgggaaatcatgtttttggcaggaataaatgctgctataagcattcgagtctcgaatgaactagggatggggcatcccagagctgccaaatattccatctgcgttgcagtcttacaatctctcgtcgttggcatattgtctatgacttttatcttcataagtagagactatattgccagtgttttcaccgacagcaaagttatgcagcaagctgttgctcgtttagcttactttcttggtgtaaccatgcttcttagtagtgttgcacaagttttaacaggtgttgctgttggaggtggatggcaagtgatggtagcttatataaatttggctgcttattatctatttgggctcccacttgcaatctttcttggatttaaagcaaatttgggtccaatgggactttatggtggcataatatgcggaagtgctcttcagatcttattcctattgattatgacttccagaatcaactgggacaatgaggtgaagcaaacgaccaagcgcataaagaaatgggggagcaaggaaataagaactgagaagataggttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

397

Amino Acids

43.75

Weight (kDa)

8.69

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15630 FvH4_7g30024 FvH4_7g30070 FvH4_7g30070 FvH4_7g30070 FvH4_7g30072 FvH4_7g30073
malus_domestica	MD01G1206400.v1.1 MD07G1277100.v1.1
pyrus_communis	pycom01g21630 pycom07g25200
rosa_chinensis	RchiOBHm_Chr1g0378011 RchiOBHm_Chr1g0378051
rosa_laevigata	RLG00000026477 RLG00000026478
rosa_multiflora	Rmu_co8476257.1_g000001 Rmu_sc0002068.1_g000001 Rmu_sc0002068.1_g000002 Rmu_sc0005268.1_g000013
rosa_roxburghii	Rroxscaffold_156G00440340 Rroxscaffold_156G00440350 Rroxscaffold_156G00440370 Rroxscaffold_156G00440410 Rroxscaffold_4G00280820 Rroxscaffold_4G00280830 Rroxscaffold_4G00280840
rosa_samantha	Rh1AG424600 Rh1AG425000 Rh1AG425100 Rh1BG383700 Rh1BG384300 Rh1BG384600 Rh1CG397400 Rh1CG398000 Rh1CG398100 Rh1CG398200 Rh1CG398600 Rh1DG414700 Rh1DG415500 Rh1DG415600 Rh1DG415700 Rh1DG415900
rosa_wichuraiana	Rw0G014950 Rw1G037320 Rw1G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	2 cut(s)	305, 1059
AclWI	GGATC	2 cut(s)	290, 302
AcsI	RAATTY	2 cut(s)	961, 1021
AcuI	CTGAAG	1 cut(s)	1055
AfaI	GTAC	2 cut(s)	351, 548
AfeI	AGCGCT	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	2 cut(s)	584, 625
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	6 cut(s)	377, 383, 719, 848, 863, 953
AluI	AGCT	6 cut(s)	377, 383, 719, 848, 863, 953
Alw21I	GWGCWC	1 cut(s)	1069
Alw26I	GTCTC	2 cut(s)	691, 795
AlwI	GGATC	2 cut(s)	290, 302
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	2 cut(s)	46, 160
ApeKI	GCWGC	6 cut(s)	76, 374, 668, 719, 841, 968
ApoI	RAATTY	2 cut(s)	961, 1021
AspLEI	GCGC	2 cut(s)	81, 1143
AspS9I	GGNCC	1 cut(s)	1028
AsuHPI	GGTGA	2 cut(s)	814, 1135
AvaII	GGWCC	1 cut(s)	1028
BanII	GRGCYC	1 cut(s)	990
BarI	GAAGNNNNNNTAC	2 cut(s)	870, 902
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	1069
BbvI	GCAGC	6 cut(s)	88, 386, 655, 706, 853, 955
BccI	CCATC	6 cut(s)	107, 242, 697, 740, 930, 940
BciT130I	CCWGG	1 cut(s)	536
BcoDI	GTCTC	2 cut(s)	691, 795
BfaI	CTAG	4 cut(s)	95, 311, 501, 698
BfmI	CTRYAG	2 cut(s)	260, 378
BfoI	RGCGCY	1 cut(s)	82
BglII	AGATCT	1 cut(s)	1074
BisI	GCNGC	7 cut(s)	77, 306, 375, 669, 720, 842, 969
BlsI	GCNGC	7 cut(s)	78, 307, 376, 670, 721, 843, 970
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	1 cut(s)	1028
BmgT120I	GGNCC	1 cut(s)	1028
BmiI	GGNNCC	3 cut(s)	607, 989, 1029
BmrFI	CCNGG	1 cut(s)	536
BmrI	ACTGGG	2 cut(s)	367, 1120
BmsI	GCATC	1 cut(s)	718
BmuI	ACTGGG	2 cut(s)	367, 1120
BpiI	GAAGAC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	557
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bse118I	RCCGGY	1 cut(s)	572
Bse1I	ACTGG	4 cut(s)	362, 463, 813, 1115
BseBI	CCWGG	1 cut(s)	536
BseGI	GGATG	3 cut(s)	708, 709, 941
BseMII	CTCAG	3 cut(s)	230, 281, 1167
BseNI	ACTGG	4 cut(s)	362, 463, 813, 1115
BseXI	GCAGC	6 cut(s)	88, 386, 655, 706, 853, 955
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	2 cut(s)	48, 162
BsiHKAI	GWGCWC	1 cut(s)	1069
BsiSI	CCGG	1 cut(s)	573
BslFI	GGGAC	3 cut(s)	493, 1050, 1127
BsmAI	GTCTC	2 cut(s)	691, 795
BsmFI	GGGAC	3 cut(s)	493, 1050, 1127
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	2 cut(s)	48, 162
Bsp1286I	GDGCHC	2 cut(s)	990, 1069
Bsp143I	GATC	3 cut(s)	282, 294, 1074
BspACI	CCGC	2 cut(s)	305, 1059
BspANI	GGCC	2 cut(s)	48, 162
BspCNI	CTCAG	3 cut(s)	229, 280, 1168
BspLI	GGNNCC	3 cut(s)	607, 989, 1029
BspPI	GGATC	2 cut(s)	290, 302
BspQI	GCTCTTC	1 cut(s)	1074
BsrFI	RCCGGY	1 cut(s)	572
BsrI	ACTGG	4 cut(s)	362, 463, 813, 1115
BssAI	RCCGGY	1 cut(s)	572
BssMI	GATC	3 cut(s)	282, 294, 1074
Bst2UI	CCWGG	1 cut(s)	536
Bst6I	CTCTTC	2 cut(s)	344, 1074
BstAPI	GCANNNNNTGC	2 cut(s)	596, 1056
BstC8I	GCNNGC	2 cut(s)	46, 846
BstDEI	CTNAG	4 cut(s)	216, 267, 890, 1176
BstF5I	GGATG	3 cut(s)	708, 709, 941
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	2 cut(s)	81, 1143
BstKTI	GATC	3 cut(s)	285, 297, 1077
BstMAI	GTCTC	2 cut(s)	691, 795
BstMBI	GATC	3 cut(s)	282, 294, 1074
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 185, 380, 596, 860, 1056
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	534
BstSFI	CTRYAG	2 cut(s)	260, 378
BstV1I	GCAGC	6 cut(s)	88, 386, 655, 706, 853, 955
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	2 cut(s)	294, 1074
BstYI	RGATCY	2 cut(s)	294, 1074
BsuRI	GGCC	2 cut(s)	48, 162
BtsCI	GGATG	3 cut(s)	708, 709, 941
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	2 cut(s)	597, 820
Cac8I	GCNNGC	2 cut(s)	46, 846
CfoI	GCGC	2 cut(s)	81, 1143
Cfr10I	RCCGGY	1 cut(s)	572
Cfr13I	GGNCC	1 cut(s)	1028
Csp6I	GTAC	2 cut(s)	350, 547
CviAII	CATG	6 cut(s)	291, 468, 487, 519, 646, 883
CviQI	GTAC	2 cut(s)	350, 547
DdeI	CTNAG	4 cut(s)	216, 267, 890, 1176
DpnI	GATC	3 cut(s)	284, 296, 1076
DpnII	GATC	3 cut(s)	282, 294, 1074
DraI	TTTAAA	2 cut(s)	481, 1015
Eam1104I	CTCTTC	2 cut(s)	344, 1074
EarI	CTCTTC	2 cut(s)	344, 1074
Eco24I	GRGCYC	1 cut(s)	990
Eco47I	GGWCC	1 cut(s)	1028
Eco47III	AGCGCT	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	1055
EcoRII	CCWGG	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	990
FaeI	CATG	6 cut(s)	294, 471, 490, 522, 649, 886
FaqI	GGGAC	3 cut(s)	493, 1050, 1127
FatI	CATG	6 cut(s)	290, 467, 486, 518, 645, 882
FauNDI	CATATG	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	7 cut(s)	77, 306, 375, 669, 720, 842, 969
FokI	GGATG	3 cut(s)	696, 715, 948
FriOI	GRGCYC	1 cut(s)	990
Fsp4HI	GCNGC	7 cut(s)	77, 306, 375, 669, 720, 842, 969
FspBI	CTAG	4 cut(s)	95, 311, 501, 698
GlaI	GCGC	2 cut(s)	80, 1142
GluI	GCNGC	7 cut(s)	77, 306, 375, 669, 720, 842, 969
GsuI	CTGGAG	1 cut(s)	557
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	2 cut(s)	48, 162
HapII	CCGG	1 cut(s)	573
HhaI	GCGC	2 cut(s)	81, 1143
Hin1II	CATG	6 cut(s)	294, 471, 490, 522, 649, 886
Hin6I	GCGC	2 cut(s)	79, 1141
HinP1I	GCGC	2 cut(s)	79, 1141
HincII	GTYRAC	1 cut(s)	578
HindII	GTYRAC	1 cut(s)	578
HinfI	GANTC	4 cut(s)	56, 556, 684, 1104
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	2 cut(s)	814, 1135
Hpy166II	GTNNAC	3 cut(s)	55, 549, 578
Hpy188I	TCNGA	5 cut(s)	219, 270, 561, 633, 1074
Hpy188III	TCNNGA	2 cut(s)	688, 1101
Hpy8I	GTNNAC	3 cut(s)	55, 549, 578
Hpy99I	CGWCG	1 cut(s)	764
HpyAV	CCTTC	1 cut(s)	443
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 185, 380, 596, 860, 1056
HpyF3I	CTNAG	4 cut(s)	216, 267, 890, 1176
Hsp92II	CATG	6 cut(s)	294, 471, 490, 522, 649, 886
HspAI	GCGC	2 cut(s)	79, 1141
Kzo9I	GATC	3 cut(s)	282, 294, 1074
LguI	GCTCTTC	1 cut(s)	1074
LmnI	GCTCC	4 cut(s)	41, 86, 993, 1158
Lsp1109I	GCAGC	6 cut(s)	88, 386, 655, 706, 853, 955
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	4 cut(s)	95, 311, 501, 698
MaeIII	GTNAC	2 cut(s)	313, 877
MalI	GATC	3 cut(s)	284, 296, 1076
MboI	GATC	3 cut(s)	282, 294, 1074
MboII	GAAGA	5 cut(s)	179, 331, 781, 1061, 1192
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	2 cut(s)	294, 1074
MhlI	GDGCHC	2 cut(s)	990, 1069
MluCI	AATT	5 cut(s)	6, 238, 411, 961, 1021
MlyI	GAGTC	3 cut(s)	50, 565, 693
MmeI	TCCRAC	2 cut(s)	434, 907
MnlI	CCTC	5 cut(s)	122, 225, 526, 923, 1114
MseI	TTAA	3 cut(s)	480, 911, 1014
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	573
MspR9I	CCNGG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	6 cut(s)	41, 185, 380, 596, 860, 1056
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	3 cut(s)	282, 294, 1074
NlaIII	CATG	6 cut(s)	294, 471, 490, 522, 649, 886
NlaIV	GGNNCC	3 cut(s)	607, 989, 1029
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	490
PciI	ACATGT	1 cut(s)	486
PciSI	GCTCTTC	1 cut(s)	1074
PctI	GAATGC	1 cut(s)	678
PfeI	GAWTC	1 cut(s)	1104
PkrI	GCNGC	7 cut(s)	78, 307, 376, 670, 721, 843, 970
PleI	GAGTC	3 cut(s)	50, 564, 692
PpsI	GAGTC	3 cut(s)	50, 564, 692
PscI	ACATGT	1 cut(s)	486
PsiI	TTATAA	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	3 cut(s)	607, 989, 1029
PspPI	GGNCC	1 cut(s)	1028
PsuI	RGATCY	2 cut(s)	294, 1074
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	2 cut(s)	351, 548
RsaNI	GTAC	2 cut(s)	350, 547
SapI	GCTCTTC	1 cut(s)	1074
SaqAI	TTAA	3 cut(s)	480, 911, 1014
SatI	GCNGC	7 cut(s)	77, 306, 375, 669, 720, 842, 969
Sau3AI	GATC	3 cut(s)	282, 294, 1074
Sau96I	GGNCC	1 cut(s)	1028
SchI	GAGTC	3 cut(s)	50, 565, 693
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	2 cut(s)	990, 1069
SfaNI	GCATC	1 cut(s)	718
SfcI	CTRYAG	2 cut(s)	260, 378
SinI	GGWCC	1 cut(s)	1028
Sse9I	AATT	5 cut(s)	6, 238, 411, 961, 1021
SsiI	CCGC	2 cut(s)	305, 1059
SspI	AATATT	1 cut(s)	728
SspMI	CTAG	4 cut(s)	95, 311, 501, 698
StyD4I	CCNGG	1 cut(s)	534
TaqI	TCGA	3 cut(s)	354, 682, 689
TasI	AATT	5 cut(s)	6, 238, 411, 961, 1021
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	1104
Tru1I	TTAA	3 cut(s)	480, 911, 1014
Tru9I	TTAA	3 cut(s)	480, 911, 1014
TscAI	CASTG	2 cut(s)	597, 820
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	6 cut(s)	76, 374, 668, 719, 841, 968
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	5 cut(s)	108, 331, 456, 708, 781
TspRI	CASTG	2 cut(s)	597, 820
VpaK11BI	GGWCC	1 cut(s)	1028
XapI	RAATTY	2 cut(s)	961, 1021
XceI	RCATGY	1 cut(s)	490
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	4 cut(s)	95, 311, 501, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.