Rh1BG384600

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002046
Physical Location & Seq
Reverse (-)
51260704 .. 51263841
3138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG384600.1

Sequence Viewer

Length: 900 bp
ATGGAAACACAAACAGTTCCCTTGCTGAGCATCAAGGCCGAGCCAGAGCTCGACTATGCTCCGGTGAAGAGCTTCAGGGAGGGCCTGTCGGTTGGTGGGAAGGAGACGGTGAAGCTGTGGAAAGTTGCAGCTCCGGTGGCTTTTACGACTCTTTTTCAGTACCTGATTCAGTCCATCACTACTATCTTTGTCGGACATCTCGGAGACCTTCAGCTCTCTGCCGTTTCCCTCTCTCATAATGTCATCAACGCCATCGCCTTCGGCTTCCTGCAAGGTATGGCAATTGCACTTGGAACTCTTTGTGGTCAAGCATATGGAGCAGGCCAAGTAGACTCACTTGGTATCTATATGCAGCGCTCCTGCATTATCCTAGCCATCACTTGTTTCCTCCTTTCATCACTTTACATTTTCGCCACTCCATTCCTAAAGATTTTAGGCCAAGAAGACAATATAGCCGAGTTTGCTGGAAAATATAGTCTGTTGATAATCCCTCAGATGTTCTCCTTTTCCATCAATTTGCCCACCCAAAAGTTCCTACAGGCTCAGAGCAAGGTGGGGATCATCACATGGATCTCCTTTGTGGCTCTAGTCACACACACAGGATTTCTGTATCTCTTCATTAGCGTACTCGACTGGGGGCTGAATGGTGCAGCTGTAGCTTATAATATCACATATTGGGAACTTGCAATTTGTCAGTTTGTGTATGCTGTATTTTTGTGCAAGGAAGGTTGGACTGGATTTTCATGGTTGGCATTTAAAGACATGTGGGCTTTTGCTAGGCTGTCCCTTGCCTCATGTATGATGTTTTGCCTGGAGATGTGGTACACTATGAGTCTGAACATTCTTGCCGGTCAACTTGAAAATGCAGTGATTGCTCTTGGTTCCTTTTCTATATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

299

Amino Acids

33.05

Weight (kDa)

5.59

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 45 - 205 5.2e-33 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AccI GTMKAC 1 cut(s) 330
AclWI GGATC 2 cut(s) 566, 578
AcuI CTGAAG 2 cut(s) 58, 194
AfaI GTAC 3 cut(s) 161, 627, 824
AfeI AGCGCT 1 cut(s) 356
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 1 cut(s) 860
AjnI CCWGG 1 cut(s) 810
AluBI AGCT 7 cut(s) 49, 72, 115, 131, 214, 653, 659
AluI AGCT 7 cut(s) 49, 72, 115, 131, 214, 653, 659
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 2 cut(s) 98, 198
AlwI GGATC 2 cut(s) 566, 578
AlwNI CAGNNNCTG 1 cut(s) 163
Aor51HI AGCGCT 1 cut(s) 356
AoxI GGCC 4 cut(s) 36, 82, 322, 436
ApeKI GCWGC 3 cut(s) 128, 352, 650
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 1 cut(s) 357
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 76, 121
BanII GRGCYC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 3 cut(s) 140, 364, 662
BccI CCATC 4 cut(s) 182, 260, 383, 518
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 812
BcoDI GTCTC 2 cut(s) 98, 198
BfaI CTAG 3 cut(s) 371, 587, 777
BfmI CTRYAG 2 cut(s) 536, 654
BfoI RGCGCY 1 cut(s) 358
BisI GCNGC 3 cut(s) 129, 353, 651
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 3 cut(s) 130, 354, 652
Bme1390I CCNGG 1 cut(s) 812
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 883
BmrFI CCNGG 1 cut(s) 812
BmrI ACTGGG 1 cut(s) 643
BmsI GCATC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 450
BpmI CTGGAG 1 cut(s) 833
Bpu1102I GCTNAGC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 198
BsaWI WCCGGW 2 cut(s) 61, 133
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 806, 836
Bse118I RCCGGY 1 cut(s) 848
Bse1I ACTGG 2 cut(s) 638, 739
BseBI CCWGG 1 cut(s) 812
BseMII CTCAG 3 cut(s) 17, 506, 557
BseNI ACTGG 2 cut(s) 638, 739
BseXI GCAGC 3 cut(s) 140, 364, 662
BsgI GTGCAG 1 cut(s) 669
BshFI GGCC 4 cut(s) 38, 84, 324, 438
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 3 cut(s) 62, 134, 849
BslFI GGGAC 1 cut(s) 769
BsmAI GTCTC 2 cut(s) 98, 198
BsmBI CGTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 769
BsnI GGCC 4 cut(s) 38, 84, 324, 438
Bso31I GGTCTC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 558, 570
Bsp1720I GCTNAGC 1 cut(s) 26
BspANI GGCC 4 cut(s) 38, 84, 324, 438
BspCNI CTCAG 3 cut(s) 18, 505, 556
BspLI GGNNCC 1 cut(s) 883
BspPI GGATC 2 cut(s) 566, 578
BspQI GCTCTTC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 848
BsrI ACTGG 2 cut(s) 638, 739
BssAI RCCGGY 1 cut(s) 848
BssMI GATC 2 cut(s) 558, 570
Bst2UI CCWGG 1 cut(s) 812
Bst4CI ACNGT 2 cut(s) 16, 109
Bst6I CTCTTC 2 cut(s) 62, 620
BstAPI GCANNNNNTGC 1 cut(s) 872
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 3 cut(s) 26, 492, 543
BstH2I RGCGCY 1 cut(s) 358
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 2 cut(s) 561, 573
BstMAI GTCTC 2 cut(s) 98, 198
BstMBI GATC 2 cut(s) 558, 570
BstMWI GCNNNNNNNGC 5 cut(s) 137, 317, 461, 656, 872
BstNI CCWGG 1 cut(s) 812
BstNSI RCATGY 1 cut(s) 766
BstSCI CCNGG 1 cut(s) 810
BstSFI CTRYAG 2 cut(s) 536, 654
BstV1I GCAGC 3 cut(s) 140, 364, 662
BstV2I GAAGAC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 570
BstYI RGATCY 1 cut(s) 570
BsuRI GGCC 4 cut(s) 38, 84, 324, 438
BtgZI GCGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 873
BtsIMutI CAGTG 1 cut(s) 873
Cac8I GCNNGC 1 cut(s) 322
CaiI CAGNNNCTG 1 cut(s) 163
CfoI GCGC 1 cut(s) 357
Cfr10I RCCGGY 1 cut(s) 848
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 3 cut(s) 160, 626, 823
CviAII CATG 4 cut(s) 567, 744, 763, 795
CviQI GTAC 3 cut(s) 160, 626, 823
DdeI CTNAG 3 cut(s) 26, 492, 543
DpnI GATC 2 cut(s) 560, 572
DpnII GATC 2 cut(s) 558, 570
DraI TTTAAA 1 cut(s) 757
Eam1104I CTCTTC 2 cut(s) 62, 620
EarI CTCTTC 2 cut(s) 62, 620
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 198
Eco47III AGCGCT 1 cut(s) 356
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 58, 194
EcoICRI GAGCTC 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 810
EcoT38I GRGCYC 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 4 cut(s) 570, 747, 766, 798
FaqI GGGAC 1 cut(s) 769
FatI CATG 4 cut(s) 566, 743, 762, 794
FauNDI CATATG 1 cut(s) 313
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 3 cut(s) 129, 353, 651
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 3 cut(s) 129, 353, 651
FspBI CTAG 3 cut(s) 371, 587, 777
GlaI GCGC 1 cut(s) 356
GluI GCNGC 3 cut(s) 129, 353, 651
GsuI CTGGAG 1 cut(s) 833
HaeII RGCGCY 1 cut(s) 358
HaeIII GGCC 4 cut(s) 38, 84, 324, 438
HapII CCGG 3 cut(s) 62, 134, 849
HhaI GCGC 1 cut(s) 357
Hin1II CATG 4 cut(s) 570, 747, 766, 798
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HincII GTYRAC 1 cut(s) 854
HindII GTYRAC 1 cut(s) 854
HinfI GANTC 4 cut(s) 148, 166, 332, 832
HpaII CCGG 3 cut(s) 62, 134, 849
HphI GGTGA 2 cut(s) 76, 121
Hpy166II GTNNAC 3 cut(s) 331, 825, 854
Hpy188I TCNGA 5 cut(s) 194, 203, 495, 546, 837
Hpy8I GTNNAC 3 cut(s) 331, 825, 854
HpyAV CCTTC 4 cut(s) 94, 218, 268, 719
HpyCH4III ACNGT 2 cut(s) 16, 109
HpyCH4V TGCA 9 cut(s) 128, 271, 287, 352, 363, 650, 686, 720, 866
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 317, 461, 656, 872
HpyF3I CTNAG 3 cut(s) 26, 492, 543
Hsp92II CATG 4 cut(s) 570, 747, 766, 798
HspAI GCGC 1 cut(s) 355
Kzo9I GATC 2 cut(s) 558, 570
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 4 cut(s) 64, 136, 317, 362
Lsp1109I GCAGC 3 cut(s) 140, 364, 662
LweI GCATC 1 cut(s) 39
MaeI CTAG 3 cut(s) 371, 587, 777
MaeIII GTNAC 1 cut(s) 589
MalI GATC 2 cut(s) 560, 572
MboI GATC 2 cut(s) 558, 570
MboII GAAGA 3 cut(s) 79, 455, 607
MfeI CAATTG 1 cut(s) 282
MflI RGATCY 1 cut(s) 570
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 3 cut(s) 282, 514, 687
MlyI GAGTC 3 cut(s) 142, 326, 841
MmeI TCCRAC 2 cut(s) 172, 710
MnlI CCTC 5 cut(s) 73, 239, 398, 501, 802
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 3 cut(s) 62, 134, 849
MspR9I CCNGG 1 cut(s) 812
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 812
MwoI GCNNNNNNNGC 5 cut(s) 137, 317, 461, 656, 872
NdeI CATATG 1 cut(s) 313
NdeII GATC 2 cut(s) 558, 570
NlaIII CATG 4 cut(s) 570, 747, 766, 798
NlaIV GGNNCC 1 cut(s) 883
NmeAIII GCCGAG 2 cut(s) 64, 481
NmuCI GTSAC 1 cut(s) 589
NspI RCATGY 1 cut(s) 766
PciI ACATGT 1 cut(s) 762
PciSI GCTCTTC 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 3 cut(s) 130, 354, 652
PleI GAGTC 3 cut(s) 142, 326, 840
PpsI GAGTC 3 cut(s) 142, 326, 840
PscI ACATGT 1 cut(s) 762
PsiI TTATAA 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 810
PspGI CCWGG 1 cut(s) 810
PspN4I GGNNCC 1 cut(s) 883
PspPI GGNCC 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 570
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 3 cut(s) 161, 627, 824
RsaNI GTAC 3 cut(s) 160, 626, 823
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 3 cut(s) 129, 353, 651
Sau3AI GATC 2 cut(s) 558, 570
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 3 cut(s) 142, 326, 841
ScrFI CCNGG 1 cut(s) 812
SduI GDGCHC 1 cut(s) 51
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 2 cut(s) 536, 654
Sse9I AATT 3 cut(s) 282, 514, 687
SspMI CTAG 3 cut(s) 371, 587, 777
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 810
TaaI ACNGT 2 cut(s) 16, 109
TaqI TCGA 2 cut(s) 51, 630
TasI AATT 3 cut(s) 282, 514, 687
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 1 cut(s) 873
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 3 cut(s) 128, 352, 650
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 3 cut(s) 384, 607, 732
TspRI CASTG 1 cut(s) 873
XceI RCATGY 1 cut(s) 766
XmiI GTMKAC 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 3 cut(s) 371, 587, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.