Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000156

Orthogroup ID

OG0002046

Physical Location & Seq

Genomic Coordinates Forward (+)

81518 .. 85576

Gene Structure 4059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_156G00440370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

ATGAGTCTTAACATTCTCACCAGTCAACTTAAAAATGCAGTCATTGCTCTTGGTTCCTTTTCTATACGTTGGGAAATCATGTTCTTTGCTGGAATAAATGCTGCTACGAGAGACTACATTGCCATCGTTTTCACGAATAATAGCAAAGTTATGCAACAAGCTGTTGCTCGTTTAGCATTCTTTCTCGGTGTAACAATGCTTCTCAATAGCGTACCTCAAGTGTTAACAGGTGTTGCTGTTGGAAGTGGATGGCAAGAGATGGTGGCTTATATAAATTTGGCTGCTTATTATTTATTATTTGGGCTCCCACTAGCAATCTTTCTTGGCTTTAAAGCAAACTTGGGTCCAATGGGATTTTGTGGTGGCATAATAAGTGGAAATGCGCTTCAGATCTTAATCCTATTGATTATGACTTCCAAAACCAACTGGGACAATGAGCAAGGTATGGCAATTGCATTGGGAACACTTTGTGGTCAAGCATATGGTGCAGGCCAAGTTGGTTCACTTGGTATCTATTTGAAGCGCTCATGGATTGTCCTATCCATCACTTCTGTGATCCTTTCATCAGCTTATATATATGCAACTCCAATCCTAATGATCTTAGGCCAAGACCCTCATATAGCTAATCTTGCAGGAAAATATAGCAGGAAGATTCTTCTTGAAATGTTCTCTTCTACTCTCAATTTGTCCACCCAAAAGTTCCTTCAGGCTCAAAGCAAGGTCGGCGTGATCACATGGATGGCCTTTGCAGCTCTCATTGCACAAACCAGTACTAGTCTTCTTCATCTCTTCATCAACGTTTTCAGGTGGGGATTAAGAGGTGCAGCTGCAGCATACAACATAACAAATTGGGGAATTGCAATTGGTCAAGGTGTGTATTTTGTGTTCTGGTGCCAAGAGGCTTGGAATACTGGATTTTCATGGTTGGCATTTAAGGACATTTGGGTTTTTGCAATGCTTTCCTTTGCTTCGTGCTTCATGTTTTGCTTCGAGTTATGGTATGTCATGAGTGTGAACATTCTCGTTGGTGTCCTTCCAAATGCAGTGATTGCTCTTGGTTCCTTCTCTATATGCACGAACTTTCAGAATTGGGAGCTCATGTTGGTTGGAGTAAATGCTGCCATAAGCATTCGAGTCTCCAATGAACTAGGGCTGGGGCACCCAAGAACCGCAAAGTACTCGGTGTGTGTTGCTGTCTCGCAATCTTTCATGGTTGGGATCGTGTCCATGATTATTATCTTCATTACCAGAAACTACATTCCCATTGTCTTCACAGACAGTGAAGATATGCAACGAGCCGTTGCTCGTTTAGCATACCTTCTTGGTGTAACCATGCTTCTCAATAGTGCTACACAAGTGTTAACAGTTGTTGCTGTTGGAGGTGGATGGCAGGTGATGGTAGCTTATATAAATTTGGGTTGTTATTATTTGTTTGGTCTTCCACTTGCAATCCTTCTTGGGTTTAAAGCAAATCTAGGTGCCATGGGACTATGGGGTGGCATGATGAGTGGTAGTGCTCTTCAAATCATGTTCCTACTGATTCTGACTTCTAGAACCAACTGGGAGAATGAGGTGGAGCAAACCACAAAGCGCATAAAGAAGTGGGGGAACCAAGAAAAGGAGACTCGGAATATAGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

547

Amino Acids

59.96

Weight (kDa)

9.19

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	147 - 254	1.4e-17	MatE
MatE	PF01554	324 - 484	6.4e-18	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15630 FvH4_7g30024 FvH4_7g30070 FvH4_7g30070 FvH4_7g30070 FvH4_7g30072 FvH4_7g30073
malus_domestica	MD01G1206400.v1.1 MD07G1277100.v1.1
pyrus_communis	pycom01g21630 pycom07g25200
rosa_chinensis	RchiOBHm_Chr1g0378011 RchiOBHm_Chr1g0378051
rosa_laevigata	RLG00000026477 RLG00000026478
rosa_multiflora	Rmu_co8476257.1_g000001 Rmu_sc0002068.1_g000001 Rmu_sc0002068.1_g000002 Rmu_sc0005268.1_g000013
rosa_roxburghii	Rroxscaffold_156G00440340 Rroxscaffold_156G00440350 Rroxscaffold_156G00440370 Rroxscaffold_156G00440410 Rroxscaffold_4G00280820 Rroxscaffold_4G00280830 Rroxscaffold_4G00280840
rosa_samantha	Rh1AG424600 Rh1AG425000 Rh1AG425100 Rh1BG383700 Rh1BG384300 Rh1BG384600 Rh1CG397400 Rh1CG398000 Rh1CG398100 Rh1CG398200 Rh1CG398600 Rh1DG414700 Rh1DG415500 Rh1DG415600 Rh1DG415700 Rh1DG415900
rosa_wichuraiana	Rw0G014950 Rw1G037320 Rw1G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1381
Acc36I	ACCTGC	1 cut(s)	1381
AccB1I	GGYRCC	3 cut(s)	891, 1158, 1478
AciI	CCGC	1 cut(s)	1170
AclI	AACGTT	1 cut(s)	798
AclWI	GGATC	2 cut(s)	550, 1226
AcsI	RAATTY	2 cut(s)	274, 1411
AcuI	CTGAAG	2 cut(s)	371, 689
AdeI	CACNNNGTG	1 cut(s)	470
AfaI	GTAC	3 cut(s)	213, 772, 1178
AfeI	AGCGCT	1 cut(s)	524
AfiI	CCNNNNNNNGG	1 cut(s)	1618
AgsI	TTSAA	3 cut(s)	520, 662, 1523
AhlI	ACTAGT	1 cut(s)	773
AjuI	GAANNNNNNNTTGG	2 cut(s)	687, 719
AleI	CACNNNNGTG	1 cut(s)	551
AloI	GAACNNNNNNTCC	2 cut(s)	65, 97
AluBI	AGCT	8 cut(s)	161, 569, 623, 752, 827, 1096, 1403, 1637
AluI	AGCT	8 cut(s)	161, 569, 623, 752, 827, 1096, 1403, 1637
Alw21I	GWGCWC	2 cut(s)	1098, 1519
Alw26I	GTCTC	4 cut(s)	105, 1141, 1201, 1616
AlwI	GGATC	2 cut(s)	550, 1226
Aor51HI	AGCGCT	1 cut(s)	524
AoxI	GGCC	3 cut(s)	490, 604, 741
ApeKI	GCWGC	7 cut(s)	101, 281, 749, 824, 827, 830, 1118
ApoI	RAATTY	2 cut(s)	274, 1411
AspLEI	GCGC	3 cut(s)	385, 525, 1593
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	10, 1405
AvaII	GGWCC	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	1161
BanI	GGYRCC	3 cut(s)	891, 1158, 1478
BanII	GRGCYC	2 cut(s)	306, 1098
BarI	GAAGNNNNNNTAC	4 cut(s)	183, 215, 1320, 1352
BbsI	GAAGAC	3 cut(s)	770, 1261, 1430
Bbv12I	GWGCWC	2 cut(s)	1098, 1519
BbvI	GCAGC	7 cut(s)	88, 268, 761, 814, 836, 842, 1105
BccI	CCATC	7 cut(s)	131, 243, 253, 551, 733, 1380, 1390
BceAI	ACGGC	1 cut(s)	1283
BcgI	CGANNNNNNTGC	2 cut(s)	1161, 1195
BclI	TGATCA	1 cut(s)	729
BcoDI	GTCTC	4 cut(s)	105, 1141, 1201, 1616
BcuI	ACTAGT	1 cut(s)	773
BfaI	CTAG	5 cut(s)	311, 774, 1148, 1475, 1551
BfmI	CTRYAG	1 cut(s)	828
BfoI	RGCGCY	1 cut(s)	526
BfuAI	ACCTGC	1 cut(s)	1381
BglII	AGATCT	1 cut(s)	390
BisI	GCNGC	7 cut(s)	102, 282, 750, 825, 828, 831, 1119
BlsI	GCNGC	7 cut(s)	103, 283, 751, 826, 829, 832, 1120
BmcAI	AGTACT	2 cut(s)	772, 1178
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	8 cut(s)	55, 305, 345, 893, 1060, 1160, 1480, 1610
BmrI	ACTGGG	2 cut(s)	436, 1570
BmuI	ACTGGG	2 cut(s)	436, 1570
BpiI	GAAGAC	3 cut(s)	770, 1261, 1430
BpuEI	CTTGAG	1 cut(s)	201
BsaBI	GATNNNNATC	2 cut(s)	395, 1235
BsaJI	CCNNGG	1 cut(s)	1482
BsaXI	ACNNNNNCTCC	2 cut(s)	1085, 1115
Bsc4I	CCNNNNNNNGG	1 cut(s)	1618
Bse1I	ACTGG	5 cut(s)	21, 431, 768, 916, 1565
Bse3DI	GCAATG	4 cut(s)	42, 117, 756, 960
Bse8I	GATNNNNATC	2 cut(s)	395, 1235
BseDI	CCNNGG	1 cut(s)	1482
BseGI	GGATG	3 cut(s)	254, 744, 1391
BseJI	GATNNNNATC	2 cut(s)	395, 1235
BseLI	CCNNNNNNNGG	1 cut(s)	1618
BseMI	GCAATG	4 cut(s)	42, 117, 756, 960
BseNI	ACTGG	5 cut(s)	21, 431, 768, 916, 1565
BseSI	GKGCMC	1 cut(s)	1161
BseXI	GCAGC	7 cut(s)	88, 268, 761, 814, 836, 842, 1105
BseYI	CCCAGC	1 cut(s)	1153
BsgI	GTGCAG	2 cut(s)	507, 843
BshFI	GGCC	3 cut(s)	492, 606, 743
BshNI	GGYRCC	3 cut(s)	891, 1158, 1478
BsiHKAI	GWGCWC	2 cut(s)	1098, 1519
BslFI	GGGAC	2 cut(s)	443, 1500
BslI	CCNNNNNNNGG	1 cut(s)	1618
BsmAI	GTCTC	4 cut(s)	105, 1141, 1201, 1616
BsmFI	GGGAC	2 cut(s)	443, 1500
BsmI	GAATGC	2 cut(s)	176, 1128
BsnI	GGCC	3 cut(s)	492, 606, 743
Bsp1286I	GDGCHC	4 cut(s)	306, 1098, 1161, 1519
Bsp143I	GATC	5 cut(s)	390, 555, 597, 729, 1218
Bsp19I	CCATGG	1 cut(s)	1482
BspACI	CCGC	1 cut(s)	1170
BspANI	GGCC	3 cut(s)	492, 606, 743
BspHI	TCATGA	1 cut(s)	1005
BspLI	GGNNCC	8 cut(s)	55, 305, 345, 893, 1060, 1160, 1480, 1610
BspMAI	CTGCAG	1 cut(s)	832
BspMI	ACCTGC	1 cut(s)	1381
BspPI	GGATC	2 cut(s)	550, 1226
BspQI	GCTCTTC	1 cut(s)	1524
BspT107I	GGYRCC	3 cut(s)	891, 1158, 1478
BsrDI	GCAATG	4 cut(s)	42, 117, 756, 960
BsrI	ACTGG	5 cut(s)	21, 431, 768, 916, 1565
BssECI	CCNNGG	1 cut(s)	1482
BssMI	GATC	5 cut(s)	390, 555, 597, 729, 1218
BssT1I	CCWWGG	1 cut(s)	1482
Bst4CI	ACNGT	2 cut(s)	1280, 1366
Bst6I	CTCTTC	3 cut(s)	676, 794, 1524
BstAPI	GCANNNNNTGC	3 cut(s)	44, 485, 1049
BstC8I	GCNNGC	2 cut(s)	490, 1639
BstDEI	CTNAG	1 cut(s)	601
BstDSI	CCRYGG	1 cut(s)	1482
BstF5I	GGATG	3 cut(s)	254, 744, 1391
BstH2I	RGCGCY	1 cut(s)	526
BstHHI	GCGC	3 cut(s)	385, 525, 1593
BstKTI	GATC	5 cut(s)	393, 558, 600, 732, 1221
BstMAI	GTCTC	4 cut(s)	105, 1141, 1201, 1616
BstMBI	GATC	5 cut(s)	390, 555, 597, 729, 1218
BstSFI	CTRYAG	1 cut(s)	828
BstSLI	GKGCMC	1 cut(s)	1161
BstV1I	GCAGC	7 cut(s)	88, 268, 761, 814, 836, 842, 1105
BstV2I	GAAGAC	3 cut(s)	770, 1261, 1430
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	3 cut(s)	492, 606, 743
BtgI	CCRYGG	1 cut(s)	1482
BtsCI	GGATG	3 cut(s)	254, 744, 1391
BtsI	GCAGTG	1 cut(s)	1050
BtsIMutI	CAGTG	2 cut(s)	1050, 1285
BveI	ACCTGC	1 cut(s)	1381
Cac8I	GCNNGC	2 cut(s)	490, 1639
CciI	TCATGA	1 cut(s)	1005
CfoI	GCGC	3 cut(s)	385, 525, 1593
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	3 cut(s)	212, 771, 1177
CviQI	GTAC	3 cut(s)	212, 771, 1177
DdeI	CTNAG	1 cut(s)	601
DpnI	GATC	5 cut(s)	392, 557, 599, 731, 1220
DpnII	GATC	5 cut(s)	390, 555, 597, 729, 1218
DraI	TTTAAA	2 cut(s)	331, 1465
DraIII	CACNNNGTG	1 cut(s)	470
Eam1104I	CTCTTC	3 cut(s)	676, 794, 1524
EarI	CTCTTC	3 cut(s)	676, 794, 1524
Ecl136II	GAGCTC	1 cut(s)	1096
Eco130I	CCWWGG	1 cut(s)	1482
Eco24I	GRGCYC	2 cut(s)	306, 1098
Eco47I	GGWCC	1 cut(s)	344
Eco47III	AGCGCT	1 cut(s)	524
Eco53kI	GAGCTC	1 cut(s)	1096
Eco57I	CTGAAG	2 cut(s)	371, 689
EcoICRI	GAGCTC	1 cut(s)	1096
EcoT14I	CCWWGG	1 cut(s)	1482
EcoT38I	GRGCYC	2 cut(s)	306, 1098
ErhI	CCWWGG	1 cut(s)	1482
FaqI	GGGAC	2 cut(s)	443, 1500
FauNDI	CATATG	1 cut(s)	481
FbaI	TGATCA	1 cut(s)	729
Fnu4HI	GCNGC	7 cut(s)	102, 282, 750, 825, 828, 831, 1119
FokI	GGATG	3 cut(s)	261, 751, 1398
FriOI	GRGCYC	2 cut(s)	306, 1098
Fsp4HI	GCNGC	7 cut(s)	102, 282, 750, 825, 828, 831, 1119
FspBI	CTAG	5 cut(s)	311, 774, 1148, 1475, 1551
GlaI	GCGC	3 cut(s)	384, 524, 1592
GluI	GCNGC	7 cut(s)	102, 282, 750, 825, 828, 831, 1119
GsaI	CCCAGC	1 cut(s)	1157
HaeII	RGCGCY	1 cut(s)	526
HaeIII	GGCC	3 cut(s)	492, 606, 743
HhaI	GCGC	3 cut(s)	385, 525, 1593
Hin6I	GCGC	3 cut(s)	383, 523, 1591
HinP1I	GCGC	3 cut(s)	383, 523, 1591
HincII	GTYRAC	3 cut(s)	26, 225, 1362
HindII	GTYRAC	3 cut(s)	26, 225, 1362
HinfI	GANTC	5 cut(s)	4, 652, 1134, 1540, 1624
HpaI	GTTAAC	2 cut(s)	225, 1362
HphI	GGTGA	2 cut(s)	10, 1405
Hpy166II	GTNNAC	6 cut(s)	26, 225, 503, 690, 1015, 1362
Hpy188I	TCNGA	4 cut(s)	390, 1086, 1545, 1629
Hpy188III	TCNNGA	4 cut(s)	133, 659, 1006, 1551
Hpy8I	GTNNAC	6 cut(s)	26, 225, 503, 690, 1015, 1362
HpyAV	CCTTC	5 cut(s)	713, 1043, 1072, 1328, 1463
HpyCH4III	ACNGT	2 cut(s)	1280, 1366
HpyCH4IV	ACGT	2 cut(s)	67, 798
HpyF3I	CTNAG	1 cut(s)	601
HpySE526I	ACGT	2 cut(s)	67, 798
HspAI	GCGC	3 cut(s)	383, 523, 1591
Ksp22I	TGATCA	1 cut(s)	729
KspAI	GTTAAC	2 cut(s)	225, 1362
Kzo9I	GATC	5 cut(s)	390, 555, 597, 729, 1218
LguI	GCTCTTC	1 cut(s)	1524
LmnI	GCTCC	3 cut(s)	309, 1093, 1576
Lsp1109I	GCAGC	7 cut(s)	88, 268, 761, 814, 836, 842, 1105
MaeI	CTAG	5 cut(s)	311, 774, 1148, 1475, 1551
MaeII	ACGT	2 cut(s)	67, 798
MaeIII	GTNAC	2 cut(s)	190, 1327
MalI	GATC	5 cut(s)	392, 557, 599, 731, 1220
MboI	GATC	5 cut(s)	390, 555, 597, 729, 1218
MfeI	CAATTG	2 cut(s)	450, 861
MflI	RGATCY	1 cut(s)	390
MhlI	GDGCHC	4 cut(s)	306, 1098, 1161, 1519
MluCI	AATT	8 cut(s)	274, 450, 682, 847, 855, 861, 1087, 1411
MlyI	GAGTC	3 cut(s)	13, 1143, 1618
MmeI	TCCRAC	3 cut(s)	220, 1087, 1357
MnlI	CCTC	6 cut(s)	225, 624, 812, 892, 1373, 1564
MseI	TTAA	9 cut(s)	9, 30, 224, 330, 395, 815, 933, 1361, 1464
MslI	CAYNNNNRTG	3 cut(s)	551, 737, 1010
MspA1I	CMGCKG	1 cut(s)	827
MunI	CAATTG	2 cut(s)	450, 861
Mva1269I	GAATGC	2 cut(s)	176, 1128
NcoI	CCATGG	1 cut(s)	1482
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	5 cut(s)	390, 555, 597, 729, 1218
NlaIV	GGNNCC	8 cut(s)	55, 305, 345, 893, 1060, 1160, 1480, 1610
OliI	CACNNNNGTG	1 cut(s)	551
PagI	TCATGA	1 cut(s)	1005
PaqCI	CACCTGC	1 cut(s)	1381
PciSI	GCTCTTC	1 cut(s)	1524
PctI	GAATGC	2 cut(s)	176, 1128
PfeI	GAWTC	2 cut(s)	652, 1540
PkrI	GCNGC	7 cut(s)	103, 283, 751, 826, 829, 832, 1120
PleI	GAGTC	3 cut(s)	12, 1142, 1618
PpsI	GAGTC	3 cut(s)	12, 1142, 1618
Psp124BI	GAGCTC	1 cut(s)	1098
Psp1406I	AACGTT	1 cut(s)	798
PspFI	CCCAGC	1 cut(s)	1153
PspN4I	GGNNCC	8 cut(s)	55, 305, 345, 893, 1060, 1160, 1480, 1610
PspPI	GGNCC	1 cut(s)	344
PsrI	GAACNNNNNNTAC	2 cut(s)	869, 901
PstI	CTGCAG	1 cut(s)	832
PsuI	RGATCY	1 cut(s)	390
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	3 cut(s)	213, 772, 1178
RsaNI	GTAC	3 cut(s)	212, 771, 1177
RseI	CAYNNNNRTG	3 cut(s)	551, 737, 1010
SacI	GAGCTC	1 cut(s)	1098
SapI	GCTCTTC	1 cut(s)	1524
SaqAI	TTAA	9 cut(s)	9, 30, 224, 330, 395, 815, 933, 1361, 1464
SatI	GCNGC	7 cut(s)	102, 282, 750, 825, 828, 831, 1119
Sau3AI	GATC	5 cut(s)	390, 555, 597, 729, 1218
Sau96I	GGNCC	1 cut(s)	344
ScaI	AGTACT	2 cut(s)	772, 1178
SchI	GAGTC	3 cut(s)	13, 1143, 1618
SduI	GDGCHC	4 cut(s)	306, 1098, 1161, 1519
SfcI	CTRYAG	1 cut(s)	828
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	3 cut(s)	551, 737, 1010
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
SpeI	ACTAGT	1 cut(s)	773
Sse9I	AATT	8 cut(s)	274, 450, 682, 847, 855, 861, 1087, 1411
SsiI	CCGC	1 cut(s)	1170
SspMI	CTAG	5 cut(s)	311, 774, 1148, 1475, 1551
SstI	GAGCTC	1 cut(s)	1098
StyI	CCWWGG	1 cut(s)	1482
TaaI	ACNGT	2 cut(s)	1280, 1366
TaiI	ACGT	2 cut(s)	70, 801
TaqI	TCGA	2 cut(s)	990, 1132
TasI	AATT	8 cut(s)	274, 450, 682, 847, 855, 861, 1087, 1411
TatI	WGTACW	2 cut(s)	770, 1176
TfiI	GAWTC	2 cut(s)	652, 1540
Tru1I	TTAA	9 cut(s)	9, 30, 224, 330, 395, 815, 933, 1361, 1464
Tru9I	TTAA	9 cut(s)	9, 30, 224, 330, 395, 815, 933, 1361, 1464
TscAI	CASTG	2 cut(s)	1050, 1285
TseI	GCWGC	7 cut(s)	101, 281, 749, 824, 827, 830, 1118
TspDTI	ATGAA	8 cut(s)	552, 773, 781, 909, 967, 1158, 1198, 1231
TspRI	CASTG	2 cut(s)	1050, 1285
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	2 cut(s)	274, 1411
XbaI	TCTAGA	1 cut(s)	1550
XspI	CTAG	5 cut(s)	311, 774, 1148, 1475, 1551
ZrmI	AGTACT	2 cut(s)	772, 1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.