Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002046

Physical Location & Seq

Genomic Coordinates Reverse (-)

21986025 .. 21988910

Gene Structure 2886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30073.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGATTCGCAAAGAGTTCCCTTGCTGAGCATCAAGGCCGAGCCGGAGCTCGACTATGCTCCATTGAAGACCTTCGGGGAGGGCATGTCTGTTTGTTGGAAGGAGTCTGTGAAGCTGTGGAAAGTTGCAGCTCCGGTGGCTTTCACGACTCTCTTTCAGTACCTCATCCAGTCCATCACCACCATCTTCATCGGACATCTCAGAGATCTTGAGCTCTCTGCTATTTCTCTCGCTCATAATGTCATCCACGCTATCGCCTTTGGCTTCCTGAAAGGTATGGCAAATGCACTTGGAACGCTTTGTGGACAAGCTTATGGTGCAGGCCAAATCGACTCACTTGGTATCTATATGCAGTGCTCATGCATCATCCTAACCATTACTTGTTTTCTCCTCTTATCACTTTTCATTTTTGCCACTCCATTCCTCAAGATTTTAGGCCAACAAGAAAGTATAGCCGAGTTTGCTGGAAACTGCAATCTGTTGATAATCCCTCAGATGTTCTCCTTTGCCATCAATTTGCCCACCCAAAAGTTCCTTCAAGCTCAGAGCAAGGTTGGCGTCATTACATGGATCTCCTTTGTGGCTCTAGAAGGTTGGAATGGATTTTCATGGTTAGCATTCAAAGACATCTGGAATTTCGCTAAGCTGTCTCTTGCCTCATGTATGATGTTTTGCCTAGAGATGTGGTATACTATGAGTATGAACATTCTCGCCGGTCAACTTGAGAATGCAGTGATTGCCCTCGGTTCCTTCTCAATATGCTTGAACTTTCAAAGTTGGGAAACCATGATTTTGGTTGGAGTGAATACTGCTATAAGCATTCGAGTCTCAAATGAACTTGGAATGGGGCACCCAAGAGCGGCCAAATACTCCATATGTGTTGCAGTCTTGCTATCTCTCGTCGTTGGTCTTGTGTCTATGACTTCTATCTTCTTAAGTAGAGACTACATTGCCAGTGTTTTCACAGACAGCAAAGTAATGCAACGAGCTGTTGCTCATTTAGCATACTTTCTCGACGCAACCATGCTTCTTAATAGTGTTGCAGAAGTTTTGACAGGGGTTGCAGTTGGAGGCGGATGGCAAGTGATGGTAGCTTATATAAATTTGGCTGCTTATTATTTATTTGGTCTCCCATTGGCAATATTTCTTAGATTTAAAGCAAACTTGGGTCCAATGGGACTATATGGTGGCATAATAAGTGGAAGTGCCTTACAGATCTTATTCTTATTGATTATGACTTCCAGAACCAACTGGGACACTGAGGTGGAGCAAACGACAAAGCCCATAAAGAAATGGGGGAGCAAAGAAATAAGAACTGAGAAGAAGATGGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

446

Amino Acids

49.01

Weight (kDa)

7.94

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	45 - 196	1.3e-26	MatE
MatE	PF01554	220 - 381	3.3e-23	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15630 FvH4_7g30024 FvH4_7g30070 FvH4_7g30070 FvH4_7g30070 FvH4_7g30072 FvH4_7g30073
malus_domestica	MD01G1206400.v1.1 MD07G1277100.v1.1
pyrus_communis	pycom01g21630 pycom07g25200
rosa_chinensis	RchiOBHm_Chr1g0378011 RchiOBHm_Chr1g0378051
rosa_laevigata	RLG00000026477 RLG00000026478
rosa_multiflora	Rmu_co8476257.1_g000001 Rmu_sc0002068.1_g000001 Rmu_sc0002068.1_g000002 Rmu_sc0005268.1_g000013
rosa_roxburghii	Rroxscaffold_156G00440340 Rroxscaffold_156G00440350 Rroxscaffold_156G00440370 Rroxscaffold_156G00440410 Rroxscaffold_4G00280820 Rroxscaffold_4G00280830 Rroxscaffold_4G00280840
rosa_samantha	Rh1AG424600 Rh1AG425000 Rh1AG425100 Rh1BG383700 Rh1BG384300 Rh1BG384600 Rh1CG397400 Rh1CG398000 Rh1CG398100 Rh1CG398200 Rh1CG398600 Rh1DG414700 Rh1DG415500 Rh1DG415600 Rh1DG415700 Rh1DG415900
rosa_wichuraiana	Rw0G014950 Rw1G037320 Rw1G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	849
AccBSI	CCGCTC	1 cut(s)	860
AccI	GTMKAC	1 cut(s)	689
AciI	CCGC	2 cut(s)	860, 1074
AclWI	GGATC	1 cut(s)	578
AcoI	YGGCCR	1 cut(s)	861
AcsI	RAATTY	2 cut(s)	634, 1102
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	859
AflII	CTTAAG	1 cut(s)	934
AgsI	TTSAA	5 cut(s)	67, 539, 622, 766, 773
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AleI	CACNNNNGTG	1 cut(s)	1262
AluBI	AGCT	9 cut(s)	49, 115, 131, 214, 311, 542, 646, 989, 1094
AluI	AGCT	9 cut(s)	49, 115, 131, 214, 311, 542, 646, 989, 1094
Alw21I	GWGCWC	3 cut(s)	51, 216, 359
Alw26I	GTCTC	4 cut(s)	654, 832, 936, 1133
AlwI	GGATC	1 cut(s)	578
AoxI	GGCC	4 cut(s)	36, 322, 436, 861
ApeKI	GCWGC	2 cut(s)	128, 1109
ApoI	RAATTY	2 cut(s)	634, 1102
Asp700I	GAANNNNTTC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	1169
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	1169
BaeGI	GKGCMC	1 cut(s)	852
BanI	GGYRCC	1 cut(s)	849
BanII	GRGCYC	2 cut(s)	51, 216
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	3 cut(s)	51, 216, 359
BbvI	GCAGC	2 cut(s)	140, 1096
BccI	CCATC	6 cut(s)	182, 191, 518, 1071, 1081, 1321
BcoDI	GTCTC	4 cut(s)	654, 832, 936, 1133
BfaI	CTAG	2 cut(s)	587, 677
BfrI	CTTAAG	1 cut(s)	934
BglII	AGATCT	2 cut(s)	205, 1215
BisI	GCNGC	3 cut(s)	129, 861, 1110
BlpI	GCTNAGC	2 cut(s)	26, 642
BlsI	GCNGC	3 cut(s)	130, 862, 1111
Bme18I	GGWCC	1 cut(s)	1169
BmgT120I	GGNCC	1 cut(s)	1169
BmiI	GGNNCC	3 cut(s)	748, 851, 1170
BmrI	ACTGGG	1 cut(s)	1261
BmsI	GCATC	2 cut(s)	39, 372
BmuI	ACTGGG	1 cut(s)	1261
BpiI	GAAGAC	1 cut(s)	74
Bpu1102I	GCTNAGC	2 cut(s)	26, 642
BpuEI	CTTGAG	3 cut(s)	230, 410, 743
BsaHI	GRCGYC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	1133
BsaJI	CCNNGG	1 cut(s)	742
BsaWI	WCCGGW	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	859
Bse118I	RCCGGY	1 cut(s)	713
Bse1I	ACTGG	3 cut(s)	169, 954, 1256
Bse3DI	GCAATG	1 cut(s)	948
BseDI	CCNNGG	1 cut(s)	742
BseGI	GGATG	4 cut(s)	165, 243, 366, 1082
BseLI	CCNNNNNNNGG	1 cut(s)	859
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	6 cut(s)	17, 214, 506, 557, 1251, 1308
BseNI	ACTGG	3 cut(s)	169, 954, 1256
BseRI	GAGGAG	1 cut(s)	380
BseSI	GKGCMC	1 cut(s)	852
BseXI	GCAGC	2 cut(s)	140, 1096
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	4 cut(s)	38, 324, 438, 863
BshNI	GGYRCC	1 cut(s)	849
BsiHKAI	GWGCWC	3 cut(s)	51, 216, 359
BsiSI	CCGG	3 cut(s)	44, 134, 714
BslFI	GGGAC	2 cut(s)	1191, 1268
BslI	CCNNNNNNNGG	1 cut(s)	859
BsmAI	GTCTC	4 cut(s)	654, 832, 936, 1133
BsmFI	GGGAC	2 cut(s)	1191, 1268
BsmI	GAATGC	3 cut(s)	617, 733, 819
BsnI	GGCC	4 cut(s)	38, 324, 438, 863
Bso31I	GGTCTC	1 cut(s)	1133
Bsp1286I	GDGCHC	4 cut(s)	51, 216, 359, 852
Bsp143I	GATC	3 cut(s)	205, 570, 1215
Bsp1720I	GCTNAGC	2 cut(s)	26, 642
BspACI	CCGC	2 cut(s)	860, 1074
BspANI	GGCC	4 cut(s)	38, 324, 438, 863
BspCNI	CTCAG	6 cut(s)	18, 213, 505, 556, 1252, 1309
BspLI	GGNNCC	3 cut(s)	748, 851, 1170
BspPI	GGATC	1 cut(s)	578
BspT107I	GGYRCC	1 cut(s)	849
BspTI	CTTAAG	1 cut(s)	934
BspTNI	GGTCTC	1 cut(s)	1133
BsrBI	CCGCTC	1 cut(s)	860
BsrDI	GCAATG	1 cut(s)	948
BsrFI	RCCGGY	1 cut(s)	713
BsrI	ACTGG	3 cut(s)	169, 954, 1256
BssAI	RCCGGY	1 cut(s)	713
BssECI	CCNNGG	1 cut(s)	742
BssMI	GATC	3 cut(s)	205, 570, 1215
BssNAI	GTATAC	1 cut(s)	690
BssNI	GRCGYC	1 cut(s)	558
Bst1107I	GTATAC	1 cut(s)	690
BstACI	GRCGYC	1 cut(s)	558
BstAFI	CTTAAG	1 cut(s)	934
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	8 cut(s)	26, 200, 492, 543, 642, 1148, 1260, 1317
BstF5I	GGATG	4 cut(s)	165, 243, 366, 1082
BstKTI	GATC	3 cut(s)	208, 573, 1218
BstMAI	GTCTC	4 cut(s)	654, 832, 936, 1133
BstMBI	GATC	3 cut(s)	205, 570, 1215
BstMWI	GCNNNNNNNGC	6 cut(s)	137, 317, 461, 555, 737, 1001
BstNSI	RCATGY	1 cut(s)	88
BstSLI	GKGCMC	1 cut(s)	852
BstV1I	GCAGC	2 cut(s)	140, 1096
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	3 cut(s)	205, 570, 1215
BstXI	CCANNNNNNTGG	1 cut(s)	793
BstYI	RGATCY	3 cut(s)	205, 570, 1215
BstZ17I	GTATAC	1 cut(s)	690
BsuRI	GGCC	4 cut(s)	38, 324, 438, 863
BtsCI	GGATG	4 cut(s)	165, 243, 366, 1082
BtsI	GCAGTG	2 cut(s)	359, 738
BtsIMutI	CAGTG	4 cut(s)	359, 738, 961, 1257
Cac8I	GCNNGC	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	1 cut(s)	1169
CseI	GACGC	2 cut(s)	547, 1025
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	7 cut(s)	85, 360, 567, 609, 660, 787, 1024
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	8 cut(s)	26, 200, 492, 543, 642, 1148, 1260, 1317
DpnI	GATC	3 cut(s)	207, 572, 1217
DpnII	GATC	3 cut(s)	205, 570, 1215
DraI	TTTAAA	1 cut(s)	1156
EaeI	YGGCCR	1 cut(s)	861
EciI	GGCGGA	1 cut(s)	1089
Ecl136II	GAGCTC	2 cut(s)	49, 214
Eco24I	GRGCYC	2 cut(s)	51, 216
Eco31I	GGTCTC	1 cut(s)	1133
Eco47I	GGWCC	1 cut(s)	1169
Eco53kI	GAGCTC	2 cut(s)	49, 214
EcoICRI	GAGCTC	2 cut(s)	49, 214
EcoT22I	ATGCAT	1 cut(s)	365
EcoT38I	GRGCYC	2 cut(s)	51, 216
FaeI	CATG	7 cut(s)	88, 363, 570, 612, 663, 790, 1027
FaqI	GGGAC	2 cut(s)	1191, 1268
FatI	CATG	7 cut(s)	84, 359, 566, 608, 659, 786, 1023
FauNDI	CATATG	1 cut(s)	875
FblI	GTMKAC	1 cut(s)	689
Fnu4HI	GCNGC	3 cut(s)	129, 861, 1110
FokI	GGATG	4 cut(s)	152, 230, 353, 1089
FriOI	GRGCYC	2 cut(s)	51, 216
Fsp4HI	GCNGC	3 cut(s)	129, 861, 1110
FspBI	CTAG	2 cut(s)	587, 677
GluI	GCNGC	3 cut(s)	129, 861, 1110
HaeIII	GGCC	4 cut(s)	38, 324, 438, 863
HapII	CCGG	3 cut(s)	44, 134, 714
HgaI	GACGC	2 cut(s)	547, 1025
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	7 cut(s)	88, 363, 570, 612, 663, 790, 1027
HincII	GTYRAC	1 cut(s)	719
HindII	GTYRAC	1 cut(s)	719
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	5 cut(s)	5, 104, 148, 332, 825
HpaII	CCGG	3 cut(s)	44, 134, 714
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	3 cut(s)	305, 690, 719
Hpy188I	TCNGA	4 cut(s)	194, 203, 495, 546
Hpy188III	TCNNGA	8 cut(s)	145, 209, 268, 427, 587, 631, 1013, 1242
Hpy8I	GTNNAC	3 cut(s)	305, 690, 719
Hpy99I	CGWCG	2 cut(s)	905, 1019
HpyAV	CCTTC	5 cut(s)	82, 94, 545, 584, 760
HpyF10VI	GCNNNNNNNGC	6 cut(s)	137, 317, 461, 555, 737, 1001
HpyF3I	CTNAG	8 cut(s)	26, 200, 492, 543, 642, 1148, 1260, 1317
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	7 cut(s)	88, 363, 570, 612, 663, 790, 1027
Kzo9I	GATC	3 cut(s)	205, 570, 1215
LmnI	GCTCC	5 cut(s)	46, 64, 136, 1267, 1299
Lsp1109I	GCAGC	2 cut(s)	140, 1096
LweI	GCATC	2 cut(s)	39, 372
MaeI	CTAG	2 cut(s)	587, 677
MalI	GATC	3 cut(s)	207, 572, 1217
MbiI	CCGCTC	1 cut(s)	860
MboI	GATC	3 cut(s)	205, 570, 1215
MboII	GAAGA	5 cut(s)	79, 178, 922, 1333, 1336
MflI	RGATCY	3 cut(s)	205, 570, 1215
MhlI	GDGCHC	4 cut(s)	51, 216, 359, 852
MluCI	AATT	3 cut(s)	514, 634, 1102
MlyI	GAGTC	4 cut(s)	113, 142, 326, 834
MmeI	TCCRAC	4 cut(s)	77, 575, 778, 1048
MnlI	CCTC	9 cut(s)	73, 173, 401, 434, 501, 667, 752, 1064, 1255
Mph1103I	ATGCAT	1 cut(s)	365
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	3 cut(s)	935, 1032, 1155
MslI	CAYNNNNRTG	1 cut(s)	1262
MspCI	CTTAAG	1 cut(s)	934
MspI	CCGG	3 cut(s)	44, 134, 714
Mva1269I	GAATGC	3 cut(s)	617, 733, 819
MwoI	GCNNNNNNNGC	6 cut(s)	137, 317, 461, 555, 737, 1001
NdeI	CATATG	1 cut(s)	875
NdeII	GATC	3 cut(s)	205, 570, 1215
NlaIII	CATG	7 cut(s)	88, 363, 570, 612, 663, 790, 1027
NlaIV	GGNNCC	3 cut(s)	748, 851, 1170
NmeAIII	GCCGAG	2 cut(s)	64, 481
NsiI	ATGCAT	1 cut(s)	365
NspI	RCATGY	1 cut(s)	88
OliI	CACNNNNGTG	1 cut(s)	1262
PctI	GAATGC	3 cut(s)	617, 733, 819
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	130, 862, 1111
PleI	GAGTC	4 cut(s)	112, 142, 326, 833
PpsI	GAGTC	4 cut(s)	112, 142, 326, 833
Psp124BI	GAGCTC	2 cut(s)	51, 216
PspN4I	GGNNCC	3 cut(s)	748, 851, 1170
PspPI	GGNCC	1 cut(s)	1169
PsuI	RGATCY	3 cut(s)	205, 570, 1215
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	1262
SacI	GAGCTC	2 cut(s)	51, 216
SaqAI	TTAA	3 cut(s)	935, 1032, 1155
SatI	GCNGC	3 cut(s)	129, 861, 1110
Sau3AI	GATC	3 cut(s)	205, 570, 1215
Sau96I	GGNCC	1 cut(s)	1169
SchI	GAGTC	4 cut(s)	113, 142, 326, 834
SduI	GDGCHC	4 cut(s)	51, 216, 359, 852
SfaNI	GCATC	2 cut(s)	39, 372
SinI	GGWCC	1 cut(s)	1169
SmiMI	CAYNNNNRTG	1 cut(s)	1262
SmlI	CTYRAG	4 cut(s)	209, 425, 722, 934
SmoI	CTYRAG	4 cut(s)	209, 425, 722, 934
Sse9I	AATT	3 cut(s)	514, 634, 1102
SsiI	CCGC	2 cut(s)	860, 1074
SspI	AATATT	1 cut(s)	1143
SspMI	CTAG	2 cut(s)	587, 677
SstI	GAGCTC	2 cut(s)	51, 216
TaqI	TCGA	4 cut(s)	51, 330, 823, 1014
TasI	AATT	3 cut(s)	514, 634, 1102
TauI	GCSGC	1 cut(s)	863
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	3 cut(s)	935, 1032, 1155
Tru9I	TTAA	3 cut(s)	935, 1032, 1155
TscAI	CASTG	4 cut(s)	359, 738, 961, 1264
TseI	GCWGC	2 cut(s)	128, 1109
TspDTI	ATGAA	5 cut(s)	178, 394, 597, 716, 849
TspRI	CASTG	4 cut(s)	359, 738, 961, 1264
Vha464I	CTTAAG	1 cut(s)	934
VpaK11BI	GGWCC	1 cut(s)	1169
XapI	RAATTY	2 cut(s)	634, 1102
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	689
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	2 cut(s)	587, 677
Zsp2I	ATGCAT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.