Rh1DG415600

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002046
Physical Location & Seq
Reverse (-)
63154617 .. 63155807
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG415600.1

Sequence Viewer

Length: 840 bp
ATGTTCTCCTTTGCCATCAATTTGCCTACCCAAAGGTTCCTTCAGGCTCAGAGCAAGGTCGGCGTACTAGCATGGATCTCCTTTGTGGCTCTAGTCACACACACAGGACTTCTTTATCTCTTCATCATTACTGTATTCGGCTGGGGAGTGAATGGTGCAGCTGTAACTTATAATATCACATTTTGGGAAGTTGCAGTTGGTCAATTTGTGTATGCTGTGTTTTTGTGCAAGGAGAGTTGGAATGGATTTTCGTGGTTGGCGTTTAAAGATACTTGGGCTTTTGCTAGGCTGTCCGTTGCCTCATGTATGATGTTTTGCCTAGAGTCTTGGTATACTATGAGTCTTAACATTCTCGCCAGTCAACTTAAAAATGCAGTCATTGCTCTTGGTTCCTTTTCTATATGCTCAAACATTCACAGTTGGGAAATCATGTTCTTTGCTGGAATAAATGCTGCTATGAGCATTCGAGTCTCAAATGAACTTGGGATGGGGCACCCAAGAGCGGCCAAATACTCCATCTGCGTTGCAGTCTTACAATCTCTCCTCATTGGGATTGTGTCTATGACTTTTATCTTCATAAGTAGAGACTACATTGCCATCGTTTTCACGAATAGCAAAGTTATGCAACAAGCTGTTGCTCGTTTAGCATTCTTTCTCGGTGTAACAATGCTTCTGCATAGCGTACCTCAAGTGTTAACAGGTGTTGCTGTTGGAAGTGGATGGCAAGAGATGGTGGCTTATATAAATTTGGCTGCTTATTATTTATTATTTGGGCTCCCACTAGCAATCTTTCTTGCTTTAAAGCAAACTTGGGTCCAATGGGACTTTATGGTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

279

Amino Acids

31.06

Weight (kDa)

8.83

Isoelectric Point (pI)

26.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 101 - 262 1.4e-22 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 492
AccBSI CCGCTC 1 cut(s) 503
AccI GTMKAC 1 cut(s) 332
AciI CCGC 1 cut(s) 503
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 1 cut(s) 745
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 2 cut(s) 66, 684
AfiI CCNNNNNNNGG 1 cut(s) 502
AjuI GAANNNNNNNTTGG 4 cut(s) 24, 56, 180, 212
AloI GAACNNNNNNTCC 2 cut(s) 416, 448
AluBI AGCT 2 cut(s) 161, 632
AluI AGCT 2 cut(s) 161, 632
Alw26I GTCTC 2 cut(s) 475, 579
AlwI GGATC 1 cut(s) 83
AoxI GGCC 1 cut(s) 504
ApeKI GCWGC 3 cut(s) 158, 452, 752
ApoI RAATTY 1 cut(s) 745
AspS9I GGNCC 1 cut(s) 814
AvaII GGWCC 1 cut(s) 814
BaeGI GKGCMC 1 cut(s) 495
BanI GGYRCC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 777
BarI GAAGNNNNNNTAC 2 cut(s) 654, 686
BbvI GCAGC 3 cut(s) 170, 439, 739
BccI CCATC 6 cut(s) 23, 481, 524, 605, 714, 724
BcoDI GTCTC 2 cut(s) 475, 579
BfaI CTAG 5 cut(s) 68, 92, 285, 320, 782
BisI GCNGC 4 cut(s) 159, 453, 504, 753
BlsI GCNGC 4 cut(s) 160, 454, 505, 754
Bme18I GGWCC 1 cut(s) 814
BmgT120I GGNCC 1 cut(s) 814
BmiI GGNNCC 5 cut(s) 38, 391, 494, 776, 815
BpuEI CTTGAG 1 cut(s) 672
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse1I ACTGG 1 cut(s) 357
Bse3DI GCAATG 2 cut(s) 378, 591
BseGI GGATG 2 cut(s) 492, 725
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMI GCAATG 2 cut(s) 378, 591
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 357
BseRI GAGGAG 1 cut(s) 533
BseSI GKGCMC 1 cut(s) 495
BseXI GCAGC 3 cut(s) 170, 439, 739
BseYI CCCAGC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 506
BshNI GGYRCC 1 cut(s) 492
BslFI GGGAC 1 cut(s) 836
BslI CCNNNNNNNGG 1 cut(s) 502
BsmAI GTCTC 2 cut(s) 475, 579
BsmFI GGGAC 1 cut(s) 836
BsmI GAATGC 2 cut(s) 462, 647
BsnI GGCC 1 cut(s) 506
Bsp1286I GDGCHC 2 cut(s) 495, 777
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 1 cut(s) 503
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 5 cut(s) 38, 391, 494, 776, 815
BspPI GGATC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 492
BsrBI CCGCTC 1 cut(s) 503
BsrDI GCAATG 2 cut(s) 378, 591
BsrI ACTGG 1 cut(s) 357
BssMI GATC 1 cut(s) 75
BssNAI GTATAC 1 cut(s) 333
Bst1107I GTATAC 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 133, 419
Bst6I CTCTTC 1 cut(s) 125
BstAPI GCANNNNNTGC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 492, 725
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 2 cut(s) 475, 579
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 60, 380, 644
BstSLI GKGCMC 1 cut(s) 495
BstV1I GCAGC 3 cut(s) 170, 439, 739
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BstZ17I GTATAC 1 cut(s) 333
BsuRI GGCC 1 cut(s) 506
BtsCI GGATG 2 cut(s) 492, 725
Cfr13I GGNCC 1 cut(s) 814
Csp6I GTAC 2 cut(s) 65, 683
CviAII CATG 3 cut(s) 72, 303, 430
CviQI GTAC 2 cut(s) 65, 683
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
DraI TTTAAA 2 cut(s) 265, 801
EaeI YGGCCR 1 cut(s) 504
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 777
Eco47I GGWCC 1 cut(s) 814
Eco57I CTGAAG 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 777
FaeI CATG 3 cut(s) 75, 306, 433
FaqI GGGAC 1 cut(s) 836
FatI CATG 3 cut(s) 71, 302, 429
FblI GTMKAC 1 cut(s) 332
Fnu4HI GCNGC 4 cut(s) 159, 453, 504, 753
FokI GGATG 2 cut(s) 499, 732
FriOI GRGCYC 1 cut(s) 777
Fsp4HI GCNGC 4 cut(s) 159, 453, 504, 753
FspBI CTAG 5 cut(s) 68, 92, 285, 320, 782
GluI GCNGC 4 cut(s) 159, 453, 504, 753
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 1 cut(s) 506
Hin1II CATG 3 cut(s) 75, 306, 433
HincII GTYRAC 2 cut(s) 362, 696
HindII GTYRAC 2 cut(s) 362, 696
HinfI GANTC 3 cut(s) 323, 340, 468
HpaI GTTAAC 1 cut(s) 696
Hpy166II GTNNAC 3 cut(s) 333, 362, 696
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 607
Hpy8I GTNNAC 3 cut(s) 333, 362, 696
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 133, 419
HpyCH4V TGCA 7 cut(s) 158, 194, 228, 374, 527, 625, 676
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 380, 644
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 3 cut(s) 75, 306, 433
KspAI GTTAAC 1 cut(s) 696
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 780
LpnPI CCDG 6 cut(s) 29, 90, 127, 370, 426, 684
Lsp1109I GCAGC 3 cut(s) 170, 439, 739
MaeI CTAG 5 cut(s) 68, 92, 285, 320, 782
MaeIII GTNAC 3 cut(s) 94, 163, 661
MalI GATC 1 cut(s) 77
MbiI CCGCTC 1 cut(s) 503
MboI GATC 1 cut(s) 75
MboII GAAGA 2 cut(s) 112, 565
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 2 cut(s) 495, 777
MluCI AATT 3 cut(s) 19, 203, 745
MlyI GAGTC 3 cut(s) 332, 349, 477
MmeI TCCRAC 2 cut(s) 218, 691
MnlI CCTC 3 cut(s) 310, 554, 696
MseI TTAA 5 cut(s) 264, 345, 366, 695, 800
MspA1I CMGCKG 1 cut(s) 161
Mva1269I GAATGC 2 cut(s) 462, 647
MwoI GCNNNNNNNGC 3 cut(s) 60, 380, 644
NdeII GATC 1 cut(s) 75
NlaIII CATG 3 cut(s) 75, 306, 433
NlaIV GGNNCC 5 cut(s) 38, 391, 494, 776, 815
NmuCI GTSAC 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PctI GAATGC 2 cut(s) 462, 647
PkrI GCNGC 4 cut(s) 160, 454, 505, 754
PleI GAGTC 3 cut(s) 331, 348, 476
PpsI GAGTC 3 cut(s) 331, 348, 476
PsiI TTATAA 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 141
PspN4I GGNNCC 5 cut(s) 38, 391, 494, 776, 815
PspPI GGNCC 1 cut(s) 814
PsuI RGATCY 1 cut(s) 75
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 2 cut(s) 66, 684
RsaNI GTAC 2 cut(s) 65, 683
SaqAI TTAA 5 cut(s) 264, 345, 366, 695, 800
SatI GCNGC 4 cut(s) 159, 453, 504, 753
Sau3AI GATC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 814
SchI GAGTC 3 cut(s) 332, 349, 477
SduI GDGCHC 2 cut(s) 495, 777
SetI ASST 6 cut(s) 38, 60, 163, 634, 688, 703
SinI GGWCC 1 cut(s) 814
SmlI CTYRAG 1 cut(s) 687
SmoI CTYRAG 1 cut(s) 687
Sse9I AATT 3 cut(s) 19, 203, 745
SsiI CCGC 1 cut(s) 503
SspMI CTAG 5 cut(s) 68, 92, 285, 320, 782
TaaI ACNGT 2 cut(s) 133, 419
TaqI TCGA 1 cut(s) 466
TasI AATT 3 cut(s) 19, 203, 745
TauI GCSGC 1 cut(s) 506
Tru1I TTAA 5 cut(s) 264, 345, 366, 695, 800
Tru9I TTAA 5 cut(s) 264, 345, 366, 695, 800
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 3 cut(s) 158, 452, 752
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 3 cut(s) 112, 492, 565
TspGWI ACGGA 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 814
XapI RAATTY 1 cut(s) 745
XmiI GTMKAC 1 cut(s) 332
XspI CTAG 5 cut(s) 68, 92, 285, 320, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.