Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002046

Physical Location & Seq

Genomic Coordinates Reverse (-)

21967113 .. 21969324

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30024.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGTTGTTTCAGTACTTGATTCAATCTGTCACCACAATATTCGTAGGCCATCTCGGAGACCTTGAACTCTCTGCTGTTTCACTTGCTCACAATGTCATTGGCAACATCTCTTATGGTTTCCTGCAAGGTATGGCAATTGCATTGGGAACACTTTGTGGTCAAGCATATGGTGCAGGCCAAGTTGGTTCACTTGGTATCTATTTGCAGCGCTCATGGATTGTCCTATCCATCACTTCTGTGATCCTTTCATCAGCTTATATATATGCAACTCCAATCCTAATGATCTTAGGCCAAGACCCTCGTATAGCTAACCTTGCCGGAAAATATAGCAGGAAGATTCTTCCTGAAATGTTCTCTTCTACTCTCAATTTGTCCACCCAAAAGTTCCTTCAGGCTCAAAGCAAGGTAGGAGTGATCACATGGATGGCCTTTGCAGCTCTCATTGCACAAACTGGACTTCTTCATCTCTTCATCAACATTTTCGGATGGGGATTAGATGGTGCAGCTGCAGCTTACAACATAACAAATTGGGGAATTGCTATTGGTCAAGGTGTGTATTGTGTGTTCTGGTGCCAAGAGGCTTGGAATACTGGATTTTCATGGTTGGCATTTAAGGACATATGGGCTTTTGCAAAGCTTTCCTTTGCTTCATGCTTCATGTTTTGCTTCGACACCAACTTTCAGAATTGGGAGCTCATGTTGTTAGTCGGAATAAATGCTGCCATAAGCATTCGAGTCTCCAATGAACTAGGGAAGGGGCACCCAAGAACCGCAAAGTACTCAGTTTGTGTTGTTGTCTCACACTCTCTCGTGGTTGGGATCTTGTTCATGATTACTATCTTCTTAACTAGAAACTACATTCCCATCATCTTCACAGGCAGTGAAGATATGCAACGAGCTGTCGCTCGTTTAGCATATCTTCTCGGAGTAACCATGCTTCTAAACAGTGCTACACAAGTGTTAACTGGTGTTGCTGTTGGAGGTGGATGGCAGGTGATGGTAGCTTATATAAATTTGGGTTGTTACTATCTGTTTGGTCTTCCACTTGCGATCCTTCTTGGGTTTAAAGCAAAACTGGGTGCCATGGGGCTATGGGGTGGCATGATGAGTGGTAGTGCTCTTCATATCCTATTCCTACTGATTCTGACTTCCAGAACCAACTGGGACAATGAGGTGAAGGAAACCACAAAACGCATAAAGAAGTGGGGGAACCAAGAGAAGAGAACTGATCAAGAAGATAACTTGCTGAAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

419

Amino Acids

45.93

Weight (kDa)

9.07

Isoelectric Point (pI)

23.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 149	9.4e-28	MatE
MatE	PF01554	226 - 351	1.4e-17	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15630 FvH4_7g30024 FvH4_7g30070 FvH4_7g30070 FvH4_7g30070 FvH4_7g30072 FvH4_7g30073
malus_domestica	MD01G1206400.v1.1 MD07G1277100.v1.1
pyrus_communis	pycom01g21630 pycom07g25200
rosa_chinensis	RchiOBHm_Chr1g0378011 RchiOBHm_Chr1g0378051
rosa_laevigata	RLG00000026477 RLG00000026478
rosa_multiflora	Rmu_co8476257.1_g000001 Rmu_sc0002068.1_g000001 Rmu_sc0002068.1_g000002 Rmu_sc0005268.1_g000013
rosa_roxburghii	Rroxscaffold_156G00440340 Rroxscaffold_156G00440350 Rroxscaffold_156G00440370 Rroxscaffold_156G00440410 Rroxscaffold_4G00280820 Rroxscaffold_4G00280830 Rroxscaffold_4G00280840
rosa_samantha	Rh1AG424600 Rh1AG425000 Rh1AG425100 Rh1BG383700 Rh1BG384300 Rh1BG384600 Rh1CG397400 Rh1CG398000 Rh1CG398100 Rh1CG398200 Rh1CG398600 Rh1DG414700 Rh1DG415500 Rh1DG415600 Rh1DG415700 Rh1DG415900
rosa_wichuraiana	Rw0G014950 Rw1G037320 Rw1G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	982
Acc36I	ACCTGC	1 cut(s)	982
AccB1I	GGYRCC	3 cut(s)	570, 759, 1079
AciI	CCGC	1 cut(s)	771
AclWI	GGATC	3 cut(s)	235, 827, 1045
AcsI	RAATTY	1 cut(s)	1012
AcuI	CTGAAG	1 cut(s)	374
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	2 cut(s)	14, 779
AfeI	AGCGCT	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	23, 65
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	9 cut(s)	254, 308, 437, 506, 512, 637, 694, 899, 1004
AluI	AGCT	9 cut(s)	254, 308, 437, 506, 512, 637, 694, 899, 1004
Alw21I	GWGCWC	2 cut(s)	696, 1120
Alw26I	GTCTC	3 cut(s)	51, 742, 802
AlwI	GGATC	3 cut(s)	235, 827, 1045
Aor51HI	AGCGCT	1 cut(s)	209
AoxI	GGCC	4 cut(s)	46, 175, 289, 426
ApeKI	GCWGC	6 cut(s)	205, 434, 503, 506, 509, 719
ApoI	RAATTY	1 cut(s)	1012
AspLEI	GCGC	1 cut(s)	210
AsuHPI	GGTGA	3 cut(s)	22, 1006, 1186
BaeGI	GKGCMC	1 cut(s)	762
BanI	GGYRCC	3 cut(s)	570, 759, 1079
BanII	GRGCYC	1 cut(s)	696
BarI	GAAGNNNNNNTAC	2 cut(s)	921, 953
BauI	CACGAG	1 cut(s)	809
BbsI	GAAGAC	1 cut(s)	1031
Bbv12I	GWGCWC	2 cut(s)	696, 1120
BbvI	GCAGC	6 cut(s)	217, 446, 493, 515, 521, 706
BccI	CCATC	8 cut(s)	57, 236, 418, 480, 491, 872, 981, 991
BclI	TGATCA	2 cut(s)	414, 1228
BcoDI	GTCTC	3 cut(s)	51, 742, 802
BfaI	CTAG	2 cut(s)	749, 849
BfmI	CTRYAG	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	982
BisI	GCNGC	6 cut(s)	206, 435, 504, 507, 510, 720
BlsI	GCNGC	6 cut(s)	207, 436, 505, 508, 511, 721
BmcAI	AGTACT	2 cut(s)	14, 779
BmiI	GGNNCC	4 cut(s)	572, 761, 1081, 1211
BmrI	ACTGGG	2 cut(s)	1085, 1171
BmuI	ACTGGG	2 cut(s)	1085, 1171
BpiI	GAAGAC	1 cut(s)	1031
BsaBI	GATNNNNATC	1 cut(s)	836
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	1083
BsaXI	ACNNNNNCTCC	2 cut(s)	683, 713
Bse1I	ACTGG	5 cut(s)	457, 595, 970, 1080, 1166
Bse3DI	GCAATG	1 cut(s)	441
Bse8I	GATNNNNATC	1 cut(s)	836
BseDI	CCNNGG	1 cut(s)	1083
BseGI	GGATG	3 cut(s)	429, 491, 992
BseJI	GATNNNNATC	1 cut(s)	836
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	1 cut(s)	795
BseNI	ACTGG	5 cut(s)	457, 595, 970, 1080, 1166
BseSI	GKGCMC	1 cut(s)	762
BseXI	GCAGC	6 cut(s)	217, 446, 493, 515, 521, 706
BsgI	GTGCAG	2 cut(s)	192, 522
BshFI	GGCC	4 cut(s)	48, 177, 291, 428
BshNI	GGYRCC	3 cut(s)	570, 759, 1079
BsiHKAI	GWGCWC	2 cut(s)	696, 1120
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	1178
BsmAI	GTCTC	3 cut(s)	51, 742, 802
BsmFI	GGGAC	1 cut(s)	1178
BsmI	GAATGC	1 cut(s)	729
BsnI	GGCC	4 cut(s)	48, 177, 291, 428
Bso31I	GGTCTC	1 cut(s)	51
Bsp1286I	GDGCHC	3 cut(s)	696, 762, 1120
Bsp143I	GATC	6 cut(s)	240, 282, 414, 819, 1050, 1228
Bsp19I	CCATGG	1 cut(s)	1083
BspACI	CCGC	1 cut(s)	771
BspANI	GGCC	4 cut(s)	48, 177, 291, 428
BspCNI	CTCAG	1 cut(s)	794
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	4 cut(s)	572, 761, 1081, 1211
BspMAI	CTGCAG	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	982
BspPI	GGATC	3 cut(s)	235, 827, 1045
BspQI	GCTCTTC	1 cut(s)	1125
BspT107I	GGYRCC	3 cut(s)	570, 759, 1079
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	441
BsrI	ACTGG	5 cut(s)	457, 595, 970, 1080, 1166
BssECI	CCNNGG	1 cut(s)	1083
BssMI	GATC	6 cut(s)	240, 282, 414, 819, 1050, 1228
BssSI	CACGAG	1 cut(s)	809
BssT1I	CCWWGG	1 cut(s)	1083
Bst2BI	CACGAG	1 cut(s)	809
Bst4CI	ACNGT	1 cut(s)	947
Bst6I	CTCTTC	4 cut(s)	361, 473, 1125, 1214
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	286, 781
BstDSI	CCRYGG	1 cut(s)	1083
BstF5I	GGATG	3 cut(s)	429, 491, 992
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	6 cut(s)	243, 285, 417, 822, 1053, 1231
BstMAI	GTCTC	3 cut(s)	51, 742, 802
BstMBI	GATC	6 cut(s)	240, 282, 414, 819, 1050, 1228
BstMWI	GCNNNNNNNGC	6 cut(s)	170, 314, 434, 443, 509, 911
BstSFI	CTRYAG	1 cut(s)	507
BstSLI	GKGCMC	1 cut(s)	762
BstV1I	GCAGC	6 cut(s)	217, 446, 493, 515, 521, 706
BstV2I	GAAGAC	1 cut(s)	1031
BstX2I	RGATCY	1 cut(s)	819
BstYI	RGATCY	1 cut(s)	819
BsuRI	GGCC	4 cut(s)	48, 177, 291, 428
BtgI	CCRYGG	1 cut(s)	1083
BtsCI	GGATG	3 cut(s)	429, 491, 992
BtsI	GCAGTG	1 cut(s)	886
BtsIMutI	CAGTG	2 cut(s)	886, 952
BveI	ACCTGC	1 cut(s)	982
Cac8I	GCNNGC	1 cut(s)	175
CciI	TCATGA	1 cut(s)	828
CfoI	GCGC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	13, 778
CviQI	GTAC	2 cut(s)	13, 778
DdeI	CTNAG	2 cut(s)	286, 781
DpnI	GATC	6 cut(s)	242, 284, 416, 821, 1052, 1230
DpnII	GATC	6 cut(s)	240, 282, 414, 819, 1050, 1228
DraI	TTTAAA	1 cut(s)	1066
DraIII	CACNNNGTG	1 cut(s)	155
Eam1104I	CTCTTC	4 cut(s)	361, 473, 1125, 1214
EarI	CTCTTC	4 cut(s)	361, 473, 1125, 1214
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	1083
Eco24I	GRGCYC	1 cut(s)	696
Eco31I	GGTCTC	1 cut(s)	51
Eco47III	AGCGCT	1 cut(s)	209
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	1083
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	1083
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	1 cut(s)	1178
FauNDI	CATATG	2 cut(s)	166, 620
FbaI	TGATCA	2 cut(s)	414, 1228
Fnu4HI	GCNGC	6 cut(s)	206, 435, 504, 507, 510, 720
FokI	GGATG	3 cut(s)	436, 498, 999
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	6 cut(s)	206, 435, 504, 507, 510, 720
FspBI	CTAG	2 cut(s)	749, 849
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	6 cut(s)	206, 435, 504, 507, 510, 720
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	4 cut(s)	48, 177, 291, 428
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	963
HindII	GTYRAC	1 cut(s)	963
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	4 cut(s)	19, 337, 735, 1141
HpaI	GTTAAC	1 cut(s)	963
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	3 cut(s)	22, 1006, 1186
Hpy166II	GTNNAC	3 cut(s)	188, 375, 963
Hpy188I	TCNGA	6 cut(s)	56, 485, 684, 710, 926, 1146
Hpy188III	TCNNGA	4 cut(s)	344, 829, 1152, 1232
Hpy8I	GTNNAC	3 cut(s)	188, 375, 963
HpyAV	CCTTC	4 cut(s)	398, 748, 1064, 1171
HpyCH4III	ACNGT	1 cut(s)	947
HpyF10VI	GCNNNNNNNGC	6 cut(s)	170, 314, 434, 443, 509, 911
HpyF3I	CTNAG	2 cut(s)	286, 781
HspAI	GCGC	1 cut(s)	208
Ksp22I	TGATCA	2 cut(s)	414, 1228
KspAI	GTTAAC	1 cut(s)	963
Kzo9I	GATC	6 cut(s)	240, 282, 414, 819, 1050, 1228
LguI	GCTCTTC	1 cut(s)	1125
LmnI	GCTCC	1 cut(s)	691
Lsp1109I	GCAGC	6 cut(s)	217, 446, 493, 515, 521, 706
MaeI	CTAG	2 cut(s)	749, 849
MaeIII	GTNAC	3 cut(s)	28, 928, 1022
MalI	GATC	6 cut(s)	242, 284, 416, 821, 1052, 1230
MboI	GATC	6 cut(s)	240, 282, 414, 819, 1050, 1228
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	1 cut(s)	819
MhlI	GDGCHC	3 cut(s)	696, 762, 1120
MluCI	AATT	7 cut(s)	135, 367, 526, 534, 685, 1012, 1250
MlyI	GAGTC	1 cut(s)	744
MmeI	TCCRAC	2 cut(s)	688, 958
MnlI	CCTC	4 cut(s)	309, 571, 974, 1165
MseI	TTAA	4 cut(s)	612, 845, 962, 1065
MslI	CAYNNNNRTG	2 cut(s)	236, 422
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	1 cut(s)	318
MunI	CAATTG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	729
MwoI	GCNNNNNNNGC	6 cut(s)	170, 314, 434, 443, 509, 911
NcoI	CCATGG	1 cut(s)	1083
NdeI	CATATG	2 cut(s)	166, 620
NdeII	GATC	6 cut(s)	240, 282, 414, 819, 1050, 1228
NlaIV	GGNNCC	4 cut(s)	572, 761, 1081, 1211
NmuCI	GTSAC	1 cut(s)	28
OliI	CACNNNNGTG	1 cut(s)	236
PagI	TCATGA	1 cut(s)	828
PaqCI	CACCTGC	1 cut(s)	982
PciSI	GCTCTTC	1 cut(s)	1125
PctI	GAATGC	1 cut(s)	729
PfeI	GAWTC	3 cut(s)	19, 337, 1141
PkrI	GCNGC	6 cut(s)	207, 436, 505, 508, 511, 721
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
Psp124BI	GAGCTC	1 cut(s)	696
PspN4I	GGNNCC	4 cut(s)	572, 761, 1081, 1211
PsrI	GAACNNNNNNTAC	2 cut(s)	548, 580
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	819
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	2 cut(s)	14, 779
RsaNI	GTAC	2 cut(s)	13, 778
RseI	CAYNNNNRTG	2 cut(s)	236, 422
SacI	GAGCTC	1 cut(s)	696
SapI	GCTCTTC	1 cut(s)	1125
SaqAI	TTAA	4 cut(s)	612, 845, 962, 1065
SatI	GCNGC	6 cut(s)	206, 435, 504, 507, 510, 720
Sau3AI	GATC	6 cut(s)	240, 282, 414, 819, 1050, 1228
ScaI	AGTACT	2 cut(s)	14, 779
SchI	GAGTC	1 cut(s)	744
SduI	GDGCHC	3 cut(s)	696, 762, 1120
SfcI	CTRYAG	1 cut(s)	507
SmiMI	CAYNNNNRTG	2 cut(s)	236, 422
Sse9I	AATT	7 cut(s)	135, 367, 526, 534, 685, 1012, 1250
SsiI	CCGC	1 cut(s)	771
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	2 cut(s)	749, 849
SstI	GAGCTC	1 cut(s)	696
StyI	CCWWGG	1 cut(s)	1083
TaaI	ACNGT	1 cut(s)	947
TaqI	TCGA	2 cut(s)	669, 733
TasI	AATT	7 cut(s)	135, 367, 526, 534, 685, 1012, 1250
TatI	WGTACW	2 cut(s)	12, 777
TfiI	GAWTC	3 cut(s)	19, 337, 1141
Tru1I	TTAA	4 cut(s)	612, 845, 962, 1065
Tru9I	TTAA	4 cut(s)	612, 845, 962, 1065
TscAI	CASTG	2 cut(s)	886, 952
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	6 cut(s)	205, 434, 503, 506, 509, 719
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	9 cut(s)	237, 452, 460, 588, 639, 646, 759, 817, 1112
TspRI	CASTG	2 cut(s)	886, 952
XapI	RAATTY	1 cut(s)	1012
XspI	CTAG	2 cut(s)	749, 849
ZrmI	AGTACT	2 cut(s)	14, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.