Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002046

Physical Location & Seq

Genomic Coordinates Forward (+)

65393539 .. 65396492

Gene Structure 2954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG424600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCAGCAAGGTATGGCAATTGCACTTGGAACTCTTTGTGGTCAAGCATATGGAGCAGGCCAAGTAGACTCACTTGGTATCTATATGCAGCGCTCCTGCATTATCCTAGCCATCACTTGTTTCCTCCTTTCATCACTTTACATTTTCGCCACTCCATTCCTAAAGATTTTAGGCCAAGAAGACAATATAGCTGAGTTTGCTGGAAAATATAGTCTGTTGATAATCCCTCAGATGTTCTCCTTTTCCATCAATTTGCCCACCCAAAAGTTCCTACAGGCTCAGAGCAAGGTGGGGATCATCACATGGATCTCCTTTGTGGCTCTAGTCACACACACAGGATTTCTGTATCTCTTCATTAGCGTACTCGACTGGGGGCTGAATGGTGCAGCTGTAGCTTATAATATCACATATTGGGAAGTTGCAATTTGTCAGTTTGTGTATGCTGTATTTTTGTGCAAGGAAGGTTGGACTGGATTTTCATGGTTGGCATTTAAAGACATGTGGGCTTTTGCTAGGCTGTCCCTTGCCTCATGTATGATGTTTTGCCTGGAGATGTGGTACACTATGAGTCTGAACATTCTTGCCGGTCAACTTGAAAATGCAGTGATTGCTCTTGGTTCCTTTTCTATATGCTTGAACTTTCAGAGTTGGGAAATCATGTTTTTGGCAGGAATAAATGCTGCTATAAGCATTCGAGTCTCGAATGAACTAGGGATGGGGCATCCCAGAGCTGCCAAATACTCCATCTGCGTTGCAGTCTTACAATCTCTCGTCGTTGGCATATTGTCTATGACTTTTATCTTCATAAGTAGAGACTATATTGCCAGTGTTTTCACCGACAGCAAAGTTATGCAGCAAGCTGTTGCTCGTTTAGCTTACTTTCTTGGTGTAACCATGCTTCTTAGTAGTGTTGCACAAGTTTTAACAGGTGTTGCTGTTGGAGGTGGATGGCAAGTGATGGTAGCTTATATAAATTTGGCTGCTTATTATCTATTTGGGCTCCCACTTGCAATCTTTCTTGGATTTAAAGCAAATTTGGGTCCAATGGGACTTTATGGTGGCATAATATGCGGAAGTGCTCTTCAGATCTTATTCCTATTGATTATGACTTCCAGAATCAACTGGGACAATGAGGTGAAGCAAACGACCAAGCGCATAAAGAAATGGGGGAGCAAGGAAATAAGAACTGAGAAGATAGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

401

Amino Acids

44.22

Weight (kDa)

8.69

Isoelectric Point (pI)

28.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	3 - 117	5.9e-21	MatE
MatE	PF01554	177 - 338	4.5e-23	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15630 FvH4_7g30024 FvH4_7g30070 FvH4_7g30070 FvH4_7g30070 FvH4_7g30072 FvH4_7g30073
malus_domestica	MD01G1206400.v1.1 MD07G1277100.v1.1
pyrus_communis	pycom01g21630 pycom07g25200
rosa_chinensis	RchiOBHm_Chr1g0378011 RchiOBHm_Chr1g0378051
rosa_laevigata	RLG00000026477 RLG00000026478
rosa_multiflora	Rmu_co8476257.1_g000001 Rmu_sc0002068.1_g000001 Rmu_sc0002068.1_g000002 Rmu_sc0005268.1_g000013
rosa_roxburghii	Rroxscaffold_156G00440340 Rroxscaffold_156G00440350 Rroxscaffold_156G00440370 Rroxscaffold_156G00440410 Rroxscaffold_4G00280820 Rroxscaffold_4G00280830 Rroxscaffold_4G00280840
rosa_samantha	Rh1AG424600 Rh1AG425000 Rh1AG425100 Rh1BG383700 Rh1BG384300 Rh1BG384600 Rh1CG397400 Rh1CG398000 Rh1CG398100 Rh1CG398200 Rh1CG398600 Rh1DG414700 Rh1DG415500 Rh1DG415600 Rh1DG415700 Rh1DG415900
rosa_wichuraiana	Rw0G014950 Rw1G037320 Rw1G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	1 cut(s)	1071
AclWI	GGATC	2 cut(s)	302, 314
AcsI	RAATTY	2 cut(s)	973, 1033
AcuI	CTGAAG	1 cut(s)	1067
AfaI	GTAC	2 cut(s)	363, 560
AfeI	AGCGCT	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	498
AgsI	TTSAA	2 cut(s)	596, 637
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	7 cut(s)	191, 389, 395, 731, 860, 875, 965
AluI	AGCT	7 cut(s)	191, 389, 395, 731, 860, 875, 965
Alw21I	GWGCWC	1 cut(s)	1081
Alw26I	GTCTC	2 cut(s)	703, 807
AlwI	GGATC	2 cut(s)	302, 314
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	2 cut(s)	58, 172
ApeKI	GCWGC	7 cut(s)	4, 88, 386, 680, 731, 853, 980
ApoI	RAATTY	2 cut(s)	973, 1033
AspLEI	GCGC	2 cut(s)	93, 1155
AspS9I	GGNCC	1 cut(s)	1040
AsuHPI	GGTGA	2 cut(s)	826, 1147
AvaII	GGWCC	1 cut(s)	1040
BanII	GRGCYC	1 cut(s)	1002
BarI	GAAGNNNNNNTAC	2 cut(s)	882, 914
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	1081
BbvI	GCAGC	7 cut(s)	16, 100, 398, 667, 718, 865, 967
BccI	CCATC	6 cut(s)	119, 254, 709, 752, 942, 952
BciT130I	CCWGG	1 cut(s)	548
BcoDI	GTCTC	2 cut(s)	703, 807
BfaI	CTAG	4 cut(s)	107, 323, 513, 710
BfmI	CTRYAG	2 cut(s)	272, 390
BfoI	RGCGCY	1 cut(s)	94
BglII	AGATCT	1 cut(s)	1086
BisI	GCNGC	7 cut(s)	5, 89, 387, 681, 732, 854, 981
BlsI	GCNGC	7 cut(s)	6, 90, 388, 682, 733, 855, 982
Bme1390I	CCNGG	1 cut(s)	548
Bme18I	GGWCC	1 cut(s)	1040
BmgT120I	GGNCC	1 cut(s)	1040
BmiI	GGNNCC	3 cut(s)	619, 1001, 1041
BmrFI	CCNGG	1 cut(s)	548
BmrI	ACTGGG	2 cut(s)	379, 1132
BmsI	GCATC	1 cut(s)	730
BmuI	ACTGGG	2 cut(s)	379, 1132
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	569
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	4 cut(s)	374, 475, 825, 1127
BseBI	CCWGG	1 cut(s)	548
BseGI	GGATG	3 cut(s)	720, 721, 953
BseMII	CTCAG	4 cut(s)	183, 242, 293, 1179
BseNI	ACTGG	4 cut(s)	374, 475, 825, 1127
BseXI	GCAGC	7 cut(s)	16, 100, 398, 667, 718, 865, 967
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	60, 174
BsiHKAI	GWGCWC	1 cut(s)	1081
BsiSI	CCGG	1 cut(s)	585
BslFI	GGGAC	3 cut(s)	505, 1062, 1139
BsmAI	GTCTC	2 cut(s)	703, 807
BsmFI	GGGAC	3 cut(s)	505, 1062, 1139
BsmI	GAATGC	1 cut(s)	690
BsnI	GGCC	2 cut(s)	60, 174
Bsp1286I	GDGCHC	2 cut(s)	1002, 1081
Bsp143I	GATC	3 cut(s)	294, 306, 1086
BspACI	CCGC	1 cut(s)	1071
BspANI	GGCC	2 cut(s)	60, 174
BspCNI	CTCAG	4 cut(s)	184, 241, 292, 1180
BspLI	GGNNCC	3 cut(s)	619, 1001, 1041
BspPI	GGATC	2 cut(s)	302, 314
BspQI	GCTCTTC	1 cut(s)	1086
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	4 cut(s)	374, 475, 825, 1127
BssAI	RCCGGY	1 cut(s)	584
BssMI	GATC	3 cut(s)	294, 306, 1086
Bst2UI	CCWGG	1 cut(s)	548
Bst6I	CTCTTC	2 cut(s)	356, 1086
BstAPI	GCANNNNNTGC	2 cut(s)	608, 1068
BstC8I	GCNNGC	2 cut(s)	58, 858
BstDEI	CTNAG	5 cut(s)	192, 228, 279, 902, 1188
BstF5I	GGATG	3 cut(s)	720, 721, 953
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	93, 1155
BstKTI	GATC	3 cut(s)	297, 309, 1089
BstMAI	GTCTC	2 cut(s)	703, 807
BstMBI	GATC	3 cut(s)	294, 306, 1086
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 197, 392, 608, 872, 1068
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	546
BstSFI	CTRYAG	2 cut(s)	272, 390
BstV1I	GCAGC	7 cut(s)	16, 100, 398, 667, 718, 865, 967
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	306, 1086
BstYI	RGATCY	2 cut(s)	306, 1086
BsuRI	GGCC	2 cut(s)	60, 174
BtsCI	GGATG	3 cut(s)	720, 721, 953
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	2 cut(s)	609, 832
Cac8I	GCNNGC	2 cut(s)	58, 858
CfoI	GCGC	2 cut(s)	93, 1155
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	1 cut(s)	1040
Csp6I	GTAC	2 cut(s)	362, 559
CviAII	CATG	6 cut(s)	303, 480, 499, 531, 658, 895
CviQI	GTAC	2 cut(s)	362, 559
DdeI	CTNAG	5 cut(s)	192, 228, 279, 902, 1188
DpnI	GATC	3 cut(s)	296, 308, 1088
DpnII	GATC	3 cut(s)	294, 306, 1086
DraI	TTTAAA	2 cut(s)	493, 1027
Eam1104I	CTCTTC	2 cut(s)	356, 1086
EarI	CTCTTC	2 cut(s)	356, 1086
Eco24I	GRGCYC	1 cut(s)	1002
Eco47I	GGWCC	1 cut(s)	1040
Eco47III	AGCGCT	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	1067
EcoRII	CCWGG	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	1002
FaeI	CATG	6 cut(s)	306, 483, 502, 534, 661, 898
FaqI	GGGAC	3 cut(s)	505, 1062, 1139
FatI	CATG	6 cut(s)	302, 479, 498, 530, 657, 894
FauNDI	CATATG	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	7 cut(s)	5, 89, 387, 681, 732, 854, 981
FokI	GGATG	3 cut(s)	708, 727, 960
FriOI	GRGCYC	1 cut(s)	1002
Fsp4HI	GCNGC	7 cut(s)	5, 89, 387, 681, 732, 854, 981
FspBI	CTAG	4 cut(s)	107, 323, 513, 710
GlaI	GCGC	2 cut(s)	92, 1154
GluI	GCNGC	7 cut(s)	5, 89, 387, 681, 732, 854, 981
GsuI	CTGGAG	1 cut(s)	569
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	2 cut(s)	60, 174
HapII	CCGG	1 cut(s)	585
HhaI	GCGC	2 cut(s)	93, 1155
Hin1II	CATG	6 cut(s)	306, 483, 502, 534, 661, 898
Hin6I	GCGC	2 cut(s)	91, 1153
HinP1I	GCGC	2 cut(s)	91, 1153
HincII	GTYRAC	1 cut(s)	590
HindII	GTYRAC	1 cut(s)	590
HinfI	GANTC	4 cut(s)	68, 568, 696, 1116
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	2 cut(s)	826, 1147
Hpy166II	GTNNAC	3 cut(s)	67, 561, 590
Hpy188I	TCNGA	5 cut(s)	231, 282, 573, 645, 1086
Hpy188III	TCNNGA	2 cut(s)	700, 1113
Hpy8I	GTNNAC	3 cut(s)	67, 561, 590
Hpy99I	CGWCG	1 cut(s)	776
HpyAV	CCTTC	1 cut(s)	455
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 197, 392, 608, 872, 1068
HpyF3I	CTNAG	5 cut(s)	192, 228, 279, 902, 1188
Hsp92II	CATG	6 cut(s)	306, 483, 502, 534, 661, 898
HspAI	GCGC	2 cut(s)	91, 1153
Kzo9I	GATC	3 cut(s)	294, 306, 1086
LguI	GCTCTTC	1 cut(s)	1086
LmnI	GCTCC	4 cut(s)	53, 98, 1005, 1170
Lsp1109I	GCAGC	7 cut(s)	16, 100, 398, 667, 718, 865, 967
LweI	GCATC	1 cut(s)	730
MaeI	CTAG	4 cut(s)	107, 323, 513, 710
MaeIII	GTNAC	2 cut(s)	325, 889
MalI	GATC	3 cut(s)	296, 308, 1088
MboI	GATC	3 cut(s)	294, 306, 1086
MboII	GAAGA	5 cut(s)	191, 343, 793, 1073, 1204
MfeI	CAATTG	1 cut(s)	18
MflI	RGATCY	2 cut(s)	306, 1086
MhlI	GDGCHC	2 cut(s)	1002, 1081
MluCI	AATT	5 cut(s)	18, 250, 423, 973, 1033
MlyI	GAGTC	3 cut(s)	62, 577, 705
MmeI	TCCRAC	2 cut(s)	446, 919
MnlI	CCTC	5 cut(s)	134, 237, 538, 935, 1126
MseI	TTAA	3 cut(s)	492, 923, 1026
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	1 cut(s)	548
MunI	CAATTG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	690
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	6 cut(s)	53, 197, 392, 608, 872, 1068
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	3 cut(s)	294, 306, 1086
NlaIII	CATG	6 cut(s)	306, 483, 502, 534, 661, 898
NlaIV	GGNNCC	3 cut(s)	619, 1001, 1041
NmuCI	GTSAC	1 cut(s)	325
NspI	RCATGY	1 cut(s)	502
PciI	ACATGT	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	1086
PctI	GAATGC	1 cut(s)	690
PfeI	GAWTC	1 cut(s)	1116
PkrI	GCNGC	7 cut(s)	6, 90, 388, 682, 733, 855, 982
PleI	GAGTC	3 cut(s)	62, 576, 704
PpsI	GAGTC	3 cut(s)	62, 576, 704
PscI	ACATGT	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	3 cut(s)	619, 1001, 1041
PspPI	GGNCC	1 cut(s)	1040
PsuI	RGATCY	2 cut(s)	306, 1086
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	363, 560
RsaNI	GTAC	2 cut(s)	362, 559
SapI	GCTCTTC	1 cut(s)	1086
SaqAI	TTAA	3 cut(s)	492, 923, 1026
SatI	GCNGC	7 cut(s)	5, 89, 387, 681, 732, 854, 981
Sau3AI	GATC	3 cut(s)	294, 306, 1086
Sau96I	GGNCC	1 cut(s)	1040
SchI	GAGTC	3 cut(s)	62, 577, 705
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	2 cut(s)	1002, 1081
SfaNI	GCATC	1 cut(s)	730
SfcI	CTRYAG	2 cut(s)	272, 390
SinI	GGWCC	1 cut(s)	1040
Sse9I	AATT	5 cut(s)	18, 250, 423, 973, 1033
SsiI	CCGC	1 cut(s)	1071
SspMI	CTAG	4 cut(s)	107, 323, 513, 710
StyD4I	CCNGG	1 cut(s)	546
TaqI	TCGA	3 cut(s)	366, 694, 701
TasI	AATT	5 cut(s)	18, 250, 423, 973, 1033
TfiI	GAWTC	1 cut(s)	1116
Tru1I	TTAA	3 cut(s)	492, 923, 1026
Tru9I	TTAA	3 cut(s)	492, 923, 1026
TscAI	CASTG	2 cut(s)	609, 832
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	7 cut(s)	4, 88, 386, 680, 731, 853, 980
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	5 cut(s)	120, 343, 468, 720, 793
TspRI	CASTG	2 cut(s)	609, 832
VpaK11BI	GGWCC	1 cut(s)	1040
XapI	RAATTY	2 cut(s)	973, 1033
XceI	RCATGY	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	4 cut(s)	107, 323, 513, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.