Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002046

Physical Location & Seq

Genomic Coordinates Reverse (-)

64983175 .. 64985017

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G037320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCAATTGCATTGGGAACACTTTGTGGTCAAGCATATGGTGCAGGCCAAGTTGGTTCACTTGGTATCTATTTGCAGCGCTCATGGATTGTCCTATCCATCACTTCTGTGATCCTTTCATCAGCTTATATATATGCAACTCCAATCCTAATGATCTTAGGCCAAGACCCTCATATAGCTAATCTTGCCGGAAAATATAGCAGGAAGATTCTTCCTGAAATGTTCTCTTCTACTCTCAATTTGTCCACCCAAAAGTTCCTTCAGGCTCAAAGCAAGGTCGGCGTGATCACATGGATGGCCTTTGCAGCTCTCATTGCACAAACTGGACTTCTTCATCTCTTCATCAACGTTTTCGGGTGGGGATTAAGTGGTGCAGCTGCAGCATACAACATAACAAATTGGGGAATTGCAATTGGTCAAGTGATTGCTCTTGGTTCCTTCTCTATATGCACGAACTTTCAGAATTGGGAGCTCATGTTGTTGGTTGGAGTAAATGCTGCCATAAGCATTCGAGTCTCCAATGAACTAGGGATGGGGCACCCAAGAACAGCAAAGTACTCAGTGTGTGTTGCTGTCTCGCAATCTCTCATGGTTGGGATCGTGTCCATGATTATTATCTTCATTACCAGAAACTACATTCCCATTGTCTTCACAGACAGTGAAGATATGCAACGAGCCGTTGCTCGTTTAGCATACCTTCTTGGTGTAACCATGCTTCTCAATAGTGCTACACAAGTGTTAACAGGTGTTGCTGTTGGAGGTGGATGGCAGGTGATGGTAGCTTATATAAATTTGGGTTGTTATTATTTGTTTGGTCTTCCACTTGCAATCCTTCTTGGGTTTAAAGCAAATCTAGGTGCCATGGGACTATGGGGTGGCATGATGAGTGGAAGTGCTCTTCAAATCCTGTTCCTACTGATTCTGACTTCTAGAACCAACTGGGACAATGAGGTGGAGCAAACCACAAAGCGCATAAGGAAGTGGGGGAACCAAGAAAAGGAGACTCAGAATATAGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

340

Amino Acids

36.75

Weight (kDa)

9.21

Isoelectric Point (pI)

29.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 106	2.8e-17	MatE
MatE	PF01554	141 - 277	2.5e-18	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15630 FvH4_7g30024 FvH4_7g30070 FvH4_7g30070 FvH4_7g30070 FvH4_7g30072 FvH4_7g30073
malus_domestica	MD01G1206400.v1.1 MD07G1277100.v1.1
pyrus_communis	pycom01g21630 pycom07g25200
rosa_chinensis	RchiOBHm_Chr1g0378011 RchiOBHm_Chr1g0378051
rosa_laevigata	RLG00000026477 RLG00000026478
rosa_multiflora	Rmu_co8476257.1_g000001 Rmu_sc0002068.1_g000001 Rmu_sc0002068.1_g000002 Rmu_sc0005268.1_g000013
rosa_roxburghii	Rroxscaffold_156G00440340 Rroxscaffold_156G00440350 Rroxscaffold_156G00440370 Rroxscaffold_156G00440410 Rroxscaffold_4G00280820 Rroxscaffold_4G00280830 Rroxscaffold_4G00280840
rosa_samantha	Rh1AG424600 Rh1AG425000 Rh1AG425100 Rh1BG383700 Rh1BG384300 Rh1BG384600 Rh1CG397400 Rh1CG398000 Rh1CG398100 Rh1CG398200 Rh1CG398600 Rh1DG414700 Rh1DG415500 Rh1DG415600 Rh1DG415700 Rh1DG415900
rosa_wichuraiana	Rw0G014950 Rw1G037320 Rw1G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	760
Acc36I	ACCTGC	1 cut(s)	760
AccB1I	GGYRCC	2 cut(s)	537, 857
AclI	AACGTT	1 cut(s)	348
AclWI	GGATC	2 cut(s)	106, 605
AcsI	RAATTY	1 cut(s)	790
AcuI	CTGAAG	1 cut(s)	245
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	557
AfeI	AGCGCT	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	997
AgsI	TTSAA	1 cut(s)	902
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	7 cut(s)	125, 179, 308, 377, 472, 782, 1016
AluI	AGCT	7 cut(s)	125, 179, 308, 377, 472, 782, 1016
Alw21I	GWGCWC	2 cut(s)	474, 898
Alw26I	GTCTC	3 cut(s)	520, 580, 995
AlwI	GGATC	2 cut(s)	106, 605
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	3 cut(s)	46, 160, 297
ApeKI	GCWGC	6 cut(s)	76, 305, 374, 377, 380, 497
ApoI	RAATTY	1 cut(s)	790
AspLEI	GCGC	2 cut(s)	81, 972
AsuHPI	GGTGA	1 cut(s)	784
BaeGI	GKGCMC	1 cut(s)	540
BanI	GGYRCC	2 cut(s)	537, 857
BanII	GRGCYC	1 cut(s)	474
BarI	GAAGNNNNNNTAC	2 cut(s)	699, 731
BbsI	GAAGAC	2 cut(s)	640, 809
Bbv12I	GWGCWC	2 cut(s)	474, 898
BbvI	GCAGC	6 cut(s)	88, 317, 364, 386, 392, 484
BccI	CCATC	5 cut(s)	107, 289, 526, 759, 769
BceAI	ACGGC	1 cut(s)	662
BclI	TGATCA	1 cut(s)	285
BcoDI	GTCTC	3 cut(s)	520, 580, 995
BfaI	CTAG	3 cut(s)	527, 854, 930
BfmI	CTRYAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	82
BfuAI	ACCTGC	1 cut(s)	760
BisI	GCNGC	6 cut(s)	77, 306, 375, 378, 381, 498
BlsI	GCNGC	6 cut(s)	78, 307, 376, 379, 382, 499
BmcAI	AGTACT	1 cut(s)	557
BmiI	GGNNCC	4 cut(s)	436, 539, 859, 989
BmrI	ACTGGG	1 cut(s)	949
BmuI	ACTGGG	1 cut(s)	949
BpiI	GAAGAC	2 cut(s)	640, 809
BsaBI	GATNNNNATC	1 cut(s)	614
BsaJI	CCNNGG	1 cut(s)	861
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	1 cut(s)	997
Bse1I	ACTGG	2 cut(s)	328, 944
Bse3DI	GCAATG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	614
BseDI	CCNNGG	1 cut(s)	861
BseGI	GGATG	3 cut(s)	300, 537, 770
BseJI	GATNNNNATC	1 cut(s)	614
BseLI	CCNNNNNNNGG	1 cut(s)	997
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	573, 1019
BseNI	ACTGG	2 cut(s)	328, 944
BseSI	GKGCMC	1 cut(s)	540
BseXI	GCAGC	6 cut(s)	88, 317, 364, 386, 392, 484
BsgI	GTGCAG	2 cut(s)	63, 393
BshFI	GGCC	3 cut(s)	48, 162, 299
BshNI	GGYRCC	2 cut(s)	537, 857
BsiHKAI	GWGCWC	2 cut(s)	474, 898
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	2 cut(s)	879, 956
BslI	CCNNNNNNNGG	1 cut(s)	997
BsmAI	GTCTC	3 cut(s)	520, 580, 995
BsmFI	GGGAC	2 cut(s)	879, 956
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	3 cut(s)	48, 162, 299
Bsp1286I	GDGCHC	3 cut(s)	474, 540, 898
Bsp143I	GATC	4 cut(s)	111, 153, 285, 597
Bsp19I	CCATGG	1 cut(s)	861
BspANI	GGCC	3 cut(s)	48, 162, 299
BspCNI	CTCAG	2 cut(s)	572, 1018
BspLI	GGNNCC	4 cut(s)	436, 539, 859, 989
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	760
BspPI	GGATC	2 cut(s)	106, 605
BspQI	GCTCTTC	1 cut(s)	903
BspT107I	GGYRCC	2 cut(s)	537, 857
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	328, 944
BssECI	CCNNGG	1 cut(s)	861
BssMI	GATC	4 cut(s)	111, 153, 285, 597
BssT1I	CCWWGG	1 cut(s)	861
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	3 cut(s)	232, 344, 903
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	46, 1018
BstDEI	CTNAG	3 cut(s)	157, 559, 1005
BstDSI	CCRYGG	1 cut(s)	861
BstF5I	GGATG	3 cut(s)	300, 537, 770
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	2 cut(s)	81, 972
BstKTI	GATC	4 cut(s)	114, 156, 288, 600
BstMAI	GTCTC	3 cut(s)	520, 580, 995
BstMBI	GATC	4 cut(s)	111, 153, 285, 597
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 185, 279, 305, 314, 380, 689
BstSFI	CTRYAG	1 cut(s)	378
BstSLI	GKGCMC	1 cut(s)	540
BstV1I	GCAGC	6 cut(s)	88, 317, 364, 386, 392, 484
BstV2I	GAAGAC	2 cut(s)	640, 809
BsuRI	GGCC	3 cut(s)	48, 162, 299
BtgI	CCRYGG	1 cut(s)	861
BtsCI	GGATG	3 cut(s)	300, 537, 770
BtsIMutI	CAGTG	2 cut(s)	567, 664
BveI	ACCTGC	1 cut(s)	760
Cac8I	GCNNGC	2 cut(s)	46, 1018
CfoI	GCGC	2 cut(s)	81, 972
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	8 cut(s)	84, 291, 475, 589, 607, 712, 862, 880
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	3 cut(s)	157, 559, 1005
DpnI	GATC	4 cut(s)	113, 155, 287, 599
DpnII	GATC	4 cut(s)	111, 153, 285, 597
DraI	TTTAAA	1 cut(s)	844
DraIII	CACNNNGTG	1 cut(s)	26
Eam1104I	CTCTTC	3 cut(s)	232, 344, 903
EarI	CTCTTC	3 cut(s)	232, 344, 903
Ecl136II	GAGCTC	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	861
Eco24I	GRGCYC	1 cut(s)	474
Eco47III	AGCGCT	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	861
EcoT38I	GRGCYC	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	861
FaeI	CATG	8 cut(s)	87, 294, 478, 592, 610, 715, 865, 883
FaqI	GGGAC	2 cut(s)	879, 956
FatI	CATG	8 cut(s)	83, 290, 474, 588, 606, 711, 861, 879
FauNDI	CATATG	1 cut(s)	37
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	6 cut(s)	77, 306, 375, 378, 381, 498
FokI	GGATG	3 cut(s)	307, 544, 777
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	6 cut(s)	77, 306, 375, 378, 381, 498
FspBI	CTAG	3 cut(s)	527, 854, 930
GlaI	GCGC	2 cut(s)	80, 971
GluI	GCNGC	6 cut(s)	77, 306, 375, 378, 381, 498
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	48, 162, 299
HapII	CCGG	1 cut(s)	189
HhaI	GCGC	2 cut(s)	81, 972
Hin1II	CATG	8 cut(s)	87, 294, 478, 592, 610, 715, 865, 883
Hin6I	GCGC	2 cut(s)	79, 970
HinP1I	GCGC	2 cut(s)	79, 970
HincII	GTYRAC	1 cut(s)	741
HindII	GTYRAC	1 cut(s)	741
HinfI	GANTC	4 cut(s)	208, 513, 919, 1003
HpaI	GTTAAC	1 cut(s)	741
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	784
Hpy166II	GTNNAC	3 cut(s)	59, 246, 741
Hpy188I	TCNGA	3 cut(s)	462, 924, 1008
Hpy188III	TCNNGA	2 cut(s)	215, 930
Hpy8I	GTNNAC	3 cut(s)	59, 246, 741
HpyAV	CCTTC	4 cut(s)	269, 448, 707, 842
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	1 cut(s)	348
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 185, 279, 305, 314, 380, 689
HpyF3I	CTNAG	3 cut(s)	157, 559, 1005
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	8 cut(s)	87, 294, 478, 592, 610, 715, 865, 883
HspAI	GCGC	2 cut(s)	79, 970
Ksp22I	TGATCA	1 cut(s)	285
KspAI	GTTAAC	1 cut(s)	741
Kzo9I	GATC	4 cut(s)	111, 153, 285, 597
LguI	GCTCTTC	1 cut(s)	903
LmnI	GCTCC	2 cut(s)	469, 955
Lsp1109I	GCAGC	6 cut(s)	88, 317, 364, 386, 392, 484
MaeI	CTAG	3 cut(s)	527, 854, 930
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	4 cut(s)	113, 155, 287, 599
MboI	GATC	4 cut(s)	111, 153, 285, 597
MfeI	CAATTG	2 cut(s)	6, 411
MhlI	GDGCHC	3 cut(s)	474, 540, 898
MluCI	AATT	7 cut(s)	6, 238, 397, 405, 411, 463, 790
MlyI	GAGTC	2 cut(s)	522, 997
MmeI	TCCRAC	2 cut(s)	466, 736
MnlI	CCTC	3 cut(s)	180, 752, 943
MseI	TTAA	3 cut(s)	365, 740, 843
MslI	CAYNNNNRTG	2 cut(s)	107, 293
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	189
MunI	CAATTG	2 cut(s)	6, 411
Mva1269I	GAATGC	1 cut(s)	507
MwoI	GCNNNNNNNGC	7 cut(s)	41, 185, 279, 305, 314, 380, 689
NcoI	CCATGG	1 cut(s)	861
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	4 cut(s)	111, 153, 285, 597
NlaIII	CATG	8 cut(s)	87, 294, 478, 592, 610, 715, 865, 883
NlaIV	GGNNCC	4 cut(s)	436, 539, 859, 989
OliI	CACNNNNGTG	1 cut(s)	107
PaqCI	CACCTGC	1 cut(s)	760
PciSI	GCTCTTC	1 cut(s)	903
PctI	GAATGC	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	208, 919
PkrI	GCNGC	6 cut(s)	78, 307, 376, 379, 382, 499
PleI	GAGTC	2 cut(s)	521, 997
PpsI	GAGTC	2 cut(s)	521, 997
Psp124BI	GAGCTC	1 cut(s)	474
Psp1406I	AACGTT	1 cut(s)	348
PspN4I	GGNNCC	4 cut(s)	436, 539, 859, 989
PstI	CTGCAG	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	2 cut(s)	107, 293
SacI	GAGCTC	1 cut(s)	474
SapI	GCTCTTC	1 cut(s)	903
SaqAI	TTAA	3 cut(s)	365, 740, 843
SatI	GCNGC	6 cut(s)	77, 306, 375, 378, 381, 498
Sau3AI	GATC	4 cut(s)	111, 153, 285, 597
ScaI	AGTACT	1 cut(s)	557
SchI	GAGTC	2 cut(s)	522, 997
SduI	GDGCHC	3 cut(s)	474, 540, 898
SfcI	CTRYAG	1 cut(s)	378
SmiMI	CAYNNNNRTG	2 cut(s)	107, 293
Sse9I	AATT	7 cut(s)	6, 238, 397, 405, 411, 463, 790
SspMI	CTAG	3 cut(s)	527, 854, 930
SstI	GAGCTC	1 cut(s)	474
StyI	CCWWGG	1 cut(s)	861
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	511
TasI	AATT	7 cut(s)	6, 238, 397, 405, 411, 463, 790
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	2 cut(s)	208, 919
Tru1I	TTAA	3 cut(s)	365, 740, 843
Tru9I	TTAA	3 cut(s)	365, 740, 843
TscAI	CASTG	2 cut(s)	567, 664
TseI	GCWGC	6 cut(s)	76, 305, 374, 377, 380, 497
TspDTI	ATGAA	5 cut(s)	108, 323, 331, 537, 610
TspRI	CASTG	2 cut(s)	567, 664
XapI	RAATTY	1 cut(s)	790
XbaI	TCTAGA	1 cut(s)	929
XspI	CTAG	3 cut(s)	527, 854, 930
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.