Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00670

Orthogroup ID

OG0002046

Physical Location & Seq

Genomic Coordinates Reverse (-)

2595 .. 5055

Gene Structure 2461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGAAACACAAACAGTTCCCTTGCTGAGCATCAAGGCCGAGCCAGAGCTCGACTATGCTCCGGTGAAGAGCTTCAGGGAGGGCCTGTCAGTTGGTGGGAAGGAGACGGTGAAGCTGTGGAAAGTTGCAGCTCCGGTGGCTTTTACGACTCTTTTTCAGTACCTGATTCAGTCCGTCACTACTATCTTTGTCGGACATCTCGGAGACCTTCAGCTCTCCGCCGTTTCCCTCTCTCATAATGTCATCAACGCCATCGCCTTCGGCTTCCTGCAAGGTATGGCAATTGCACTTGGAACTCTTTGTGGTCAAGCATATGGAGCAGGCCAAGTAGACTCACTTGGTATCTATATGCAGCGCTCCTGCATTATCCTAGCCATCACTTGTTTCCTCCTTTCATCACTTTACATTTTCGCCACTCCATTCCTAAAGATTTTAGGCCAAGAAGACAATATAGCTGAGTTTGCTGGAAAATATAGTCTGTTGATAATCCCTCAGATGTTCTCCTTTTCCATCAATTTGCCCACCCAAAAGTTCCTACAGGCTCAGAGCAAGGTGGGGATCATCACATGGATCTCCTTTGTGGCTCTAGTCACACACACAGGATTTCTGTATCTCTTCATTAGCGTACTCGACTGGGGGCTGAATGGTGCAGCTGTAGCTTATAATATCACATATTGGGAAGTTGCAATTTGTCAGTTTGTGTATGCTGTATTTTTGTGCAAGGAAGGTTGGACTGGATTTTCATGGTTGGCATTTAAAGACATGTGGGCTTTTGCTAGGCTGTCCCTTGCCTCATGTATGATGTTTTGCCTGGAGATGTGGTACACTATGAGTCTGAACATTCTTGCCGGTCAACTTGAAAATGCAGTGATTGCTCTTGGTTCCTTTTCTATATGCTTGAACTTTCAGAGTTGGGAAATCATGTTTTTGGCAGGAATAAATGCTGCTATAAGCATTCGAGTCTCGAATGAACTAGGGATGGGGCATCCCAGAGCTGCCAAATACTCCATCTGCGTTGCAGTCTTACAATCTCTCGTCGTTGGCATATTGTCTATGACTTTTATCTTCATAAGTAGAGACTATATTGCCAGTGTTTTCACCGACAGCAAAGTTATGCAGCAAGCTGTTGCTCGTTTAGCTTACTTTCTTGGTGTAACCATGCTTCTTAGTAGTGTTGCACAAGTTTTAACAGGTGTTGCTGTTGGAGGTGGATGGCAAGTGATGGTAGCTTATATAAATTTGGCTGCTTATTATCTATTTGGGCTCCCACTTGCAATCTTTCTTGGATTTAAAGCAAATTTGGGTCCAATGGGACTTTATGGTGGCATAATATGCGGAAGTGCTCTTCAGATCTTATTCCTATTGATTATGACTTCCAGAATCAACTGGGACAATGAGGTGAAGCAAACGACCAAGCGCATAAAGAAATGGGGGAGCAAGGAAATAAGAACTGAGAAGATAGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

489

Amino Acids

53.71

Weight (kDa)

8.53

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	45 - 205	2.4e-32	MatE
MatE	PF01554	265 - 426	6.9e-23	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15630 FvH4_7g30024 FvH4_7g30070 FvH4_7g30070 FvH4_7g30070 FvH4_7g30072 FvH4_7g30073
malus_domestica	MD01G1206400.v1.1 MD07G1277100.v1.1
pyrus_communis	pycom01g21630 pycom07g25200
rosa_chinensis	RchiOBHm_Chr1g0378011 RchiOBHm_Chr1g0378051
rosa_laevigata	RLG00000026477 RLG00000026478
rosa_multiflora	Rmu_co8476257.1_g000001 Rmu_sc0002068.1_g000001 Rmu_sc0002068.1_g000002 Rmu_sc0005268.1_g000013
rosa_roxburghii	Rroxscaffold_156G00440340 Rroxscaffold_156G00440350 Rroxscaffold_156G00440370 Rroxscaffold_156G00440410 Rroxscaffold_4G00280820 Rroxscaffold_4G00280830 Rroxscaffold_4G00280840
rosa_samantha	Rh1AG424600 Rh1AG425000 Rh1AG425100 Rh1BG383700 Rh1BG384300 Rh1BG384600 Rh1CG397400 Rh1CG398000 Rh1CG398100 Rh1CG398200 Rh1CG398600 Rh1DG414700 Rh1DG415500 Rh1DG415600 Rh1DG415700 Rh1DG415900
rosa_wichuraiana	Rw0G014950 Rw1G037320 Rw1G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	2 cut(s)	219, 1335
AclWI	GGATC	2 cut(s)	566, 578
AcsI	RAATTY	2 cut(s)	1237, 1297
AcuI	CTGAAG	3 cut(s)	58, 194, 1331
AfaI	GTAC	3 cut(s)	161, 627, 824
AfeI	AGCGCT	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	762
AgsI	TTSAA	2 cut(s)	860, 901
AjnI	CCWGG	1 cut(s)	810
Alw21I	GWGCWC	2 cut(s)	51, 1345
Alw26I	GTCTC	4 cut(s)	98, 198, 967, 1071
AlwI	GGATC	2 cut(s)	566, 578
AlwNI	CAGNNNCTG	1 cut(s)	163
Aor51HI	AGCGCT	1 cut(s)	356
AoxI	GGCC	4 cut(s)	36, 82, 322, 436
ApeKI	GCWGC	7 cut(s)	128, 352, 650, 944, 995, 1117, 1244
ApoI	RAATTY	2 cut(s)	1237, 1297
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	2 cut(s)	357, 1419
AspS9I	GGNCC	2 cut(s)	82, 1304
AsuHPI	GGTGA	4 cut(s)	76, 121, 1090, 1411
AvaII	GGWCC	1 cut(s)	1304
BanII	GRGCYC	2 cut(s)	51, 1266
BarI	GAAGNNNNNNTAC	2 cut(s)	1146, 1178
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	2 cut(s)	51, 1345
BbvI	GCAGC	7 cut(s)	140, 364, 662, 931, 982, 1129, 1231
BccI	CCATC	7 cut(s)	260, 383, 518, 973, 1016, 1206, 1216
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	812
BcoDI	GTCTC	4 cut(s)	98, 198, 967, 1071
BfaI	CTAG	4 cut(s)	371, 587, 777, 974
BfmI	CTRYAG	2 cut(s)	536, 654
BfoI	RGCGCY	1 cut(s)	358
BglII	AGATCT	1 cut(s)	1350
BisI	GCNGC	7 cut(s)	129, 353, 651, 945, 996, 1118, 1245
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	7 cut(s)	130, 354, 652, 946, 997, 1119, 1246
Bme1390I	CCNGG	1 cut(s)	812
Bme18I	GGWCC	1 cut(s)	1304
BmgT120I	GGNCC	2 cut(s)	82, 1304
BmiI	GGNNCC	3 cut(s)	883, 1265, 1305
BmrFI	CCNGG	1 cut(s)	812
BmrI	ACTGGG	2 cut(s)	643, 1396
BmsI	GCATC	2 cut(s)	39, 994
BmuI	ACTGGG	2 cut(s)	643, 1396
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	833
Bpu1102I	GCTNAGC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	198
BsaWI	WCCGGW	2 cut(s)	61, 133
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 806, 836
Bse118I	RCCGGY	1 cut(s)	848
Bse1I	ACTGG	4 cut(s)	638, 739, 1089, 1391
BseBI	CCWGG	1 cut(s)	812
BseGI	GGATG	3 cut(s)	984, 985, 1217
BseMII	CTCAG	5 cut(s)	17, 447, 506, 557, 1443
BseNI	ACTGG	4 cut(s)	638, 739, 1089, 1391
BseXI	GCAGC	7 cut(s)	140, 364, 662, 931, 982, 1129, 1231
BsgI	GTGCAG	1 cut(s)	669
BshFI	GGCC	4 cut(s)	38, 84, 324, 438
BsiHKAI	GWGCWC	2 cut(s)	51, 1345
BsiSI	CCGG	3 cut(s)	62, 134, 849
BslFI	GGGAC	3 cut(s)	769, 1326, 1403
BsmAI	GTCTC	4 cut(s)	98, 198, 967, 1071
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	3 cut(s)	769, 1326, 1403
BsmI	GAATGC	1 cut(s)	954
BsnI	GGCC	4 cut(s)	38, 84, 324, 438
Bso31I	GGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	3 cut(s)	51, 1266, 1345
Bsp143I	GATC	3 cut(s)	558, 570, 1350
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	2 cut(s)	219, 1335
BspANI	GGCC	4 cut(s)	38, 84, 324, 438
BspCNI	CTCAG	5 cut(s)	18, 448, 505, 556, 1444
BspLI	GGNNCC	3 cut(s)	883, 1265, 1305
BspPI	GGATC	2 cut(s)	566, 578
BspQI	GCTCTTC	2 cut(s)	62, 1350
BspTNI	GGTCTC	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	848
BsrI	ACTGG	4 cut(s)	638, 739, 1089, 1391
BssAI	RCCGGY	1 cut(s)	848
BssMI	GATC	3 cut(s)	558, 570, 1350
Bst2UI	CCWGG	1 cut(s)	812
Bst4CI	ACNGT	2 cut(s)	16, 109
Bst6I	CTCTTC	3 cut(s)	62, 620, 1350
BstAPI	GCANNNNNTGC	2 cut(s)	872, 1332
BstC8I	GCNNGC	2 cut(s)	322, 1122
BstDEI	CTNAG	6 cut(s)	26, 456, 492, 543, 1166, 1452
BstF5I	GGATG	3 cut(s)	984, 985, 1217
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	2 cut(s)	357, 1419
BstKTI	GATC	3 cut(s)	561, 573, 1353
BstMAI	GTCTC	4 cut(s)	98, 198, 967, 1071
BstMBI	GATC	3 cut(s)	558, 570, 1350
BstMWI	GCNNNNNNNGC	7 cut(s)	137, 317, 461, 656, 872, 1136, 1332
BstNI	CCWGG	1 cut(s)	812
BstNSI	RCATGY	1 cut(s)	766
BstSCI	CCNGG	1 cut(s)	810
BstSFI	CTRYAG	2 cut(s)	536, 654
BstV1I	GCAGC	7 cut(s)	140, 364, 662, 931, 982, 1129, 1231
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	2 cut(s)	570, 1350
BstYI	RGATCY	2 cut(s)	570, 1350
BsuRI	GGCC	4 cut(s)	38, 84, 324, 438
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	3 cut(s)	984, 985, 1217
BtsI	GCAGTG	1 cut(s)	873
BtsIMutI	CAGTG	2 cut(s)	873, 1096
Cac8I	GCNNGC	2 cut(s)	322, 1122
CaiI	CAGNNNCTG	1 cut(s)	163
CfoI	GCGC	2 cut(s)	357, 1419
Cfr10I	RCCGGY	1 cut(s)	848
Cfr13I	GGNCC	2 cut(s)	82, 1304
Csp6I	GTAC	3 cut(s)	160, 626, 823
CviAII	CATG	6 cut(s)	567, 744, 763, 795, 922, 1159
CviQI	GTAC	3 cut(s)	160, 626, 823
DdeI	CTNAG	6 cut(s)	26, 456, 492, 543, 1166, 1452
DpnI	GATC	3 cut(s)	560, 572, 1352
DpnII	GATC	3 cut(s)	558, 570, 1350
DraI	TTTAAA	2 cut(s)	757, 1291
Eam1104I	CTCTTC	3 cut(s)	62, 620, 1350
EarI	CTCTTC	3 cut(s)	62, 620, 1350
EciI	GGCGGA	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	2 cut(s)	51, 1266
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	1304
Eco47III	AGCGCT	1 cut(s)	356
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	3 cut(s)	58, 194, 1331
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	810
EcoT38I	GRGCYC	2 cut(s)	51, 1266
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	6 cut(s)	570, 747, 766, 798, 925, 1162
FaqI	GGGAC	3 cut(s)	769, 1326, 1403
FatI	CATG	6 cut(s)	566, 743, 762, 794, 921, 1158
FauNDI	CATATG	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	7 cut(s)	129, 353, 651, 945, 996, 1118, 1245
FokI	GGATG	3 cut(s)	972, 991, 1224
FriOI	GRGCYC	2 cut(s)	51, 1266
Fsp4HI	GCNGC	7 cut(s)	129, 353, 651, 945, 996, 1118, 1245
FspBI	CTAG	4 cut(s)	371, 587, 777, 974
GlaI	GCGC	2 cut(s)	356, 1418
GluI	GCNGC	7 cut(s)	129, 353, 651, 945, 996, 1118, 1245
GsuI	CTGGAG	1 cut(s)	833
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	4 cut(s)	38, 84, 324, 438
HapII	CCGG	3 cut(s)	62, 134, 849
HhaI	GCGC	2 cut(s)	357, 1419
Hin1II	CATG	6 cut(s)	570, 747, 766, 798, 925, 1162
Hin6I	GCGC	2 cut(s)	355, 1417
HinP1I	GCGC	2 cut(s)	355, 1417
HincII	GTYRAC	1 cut(s)	854
HindII	GTYRAC	1 cut(s)	854
HinfI	GANTC	6 cut(s)	148, 166, 332, 832, 960, 1380
HpaII	CCGG	3 cut(s)	62, 134, 849
HphI	GGTGA	4 cut(s)	76, 121, 1090, 1411
Hpy166II	GTNNAC	3 cut(s)	331, 825, 854
Hpy188I	TCNGA	7 cut(s)	194, 203, 495, 546, 837, 909, 1350
Hpy188III	TCNNGA	2 cut(s)	964, 1377
Hpy8I	GTNNAC	3 cut(s)	331, 825, 854
Hpy99I	CGWCG	1 cut(s)	1040
HpyAV	CCTTC	4 cut(s)	94, 218, 268, 719
HpyCH4III	ACNGT	2 cut(s)	16, 109
HpyF10VI	GCNNNNNNNGC	7 cut(s)	137, 317, 461, 656, 872, 1136, 1332
HpyF3I	CTNAG	6 cut(s)	26, 456, 492, 543, 1166, 1452
Hsp92II	CATG	6 cut(s)	570, 747, 766, 798, 925, 1162
HspAI	GCGC	2 cut(s)	355, 1417
Kzo9I	GATC	3 cut(s)	558, 570, 1350
LguI	GCTCTTC	2 cut(s)	62, 1350
LmnI	GCTCC	6 cut(s)	64, 136, 317, 362, 1269, 1434
Lsp1109I	GCAGC	7 cut(s)	140, 364, 662, 931, 982, 1129, 1231
LweI	GCATC	2 cut(s)	39, 994
MaeI	CTAG	4 cut(s)	371, 587, 777, 974
MaeIII	GTNAC	3 cut(s)	175, 589, 1153
MalI	GATC	3 cut(s)	560, 572, 1352
MboI	GATC	3 cut(s)	558, 570, 1350
MboII	GAAGA	6 cut(s)	79, 455, 607, 1057, 1337, 1468
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	2 cut(s)	570, 1350
MhlI	GDGCHC	3 cut(s)	51, 1266, 1345
MluCI	AATT	5 cut(s)	282, 514, 687, 1237, 1297
MlyI	GAGTC	4 cut(s)	142, 326, 841, 969
MmeI	TCCRAC	3 cut(s)	172, 710, 1183
MnlI	CCTC	7 cut(s)	73, 239, 398, 501, 802, 1199, 1390
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	3 cut(s)	756, 1187, 1290
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	3 cut(s)	62, 134, 849
MspR9I	CCNGG	1 cut(s)	812
MunI	CAATTG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	954
MvaI	CCWGG	1 cut(s)	812
MwoI	GCNNNNNNNGC	7 cut(s)	137, 317, 461, 656, 872, 1136, 1332
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	3 cut(s)	558, 570, 1350
NlaIII	CATG	6 cut(s)	570, 747, 766, 798, 925, 1162
NlaIV	GGNNCC	3 cut(s)	883, 1265, 1305
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	2 cut(s)	175, 589
NspI	RCATGY	1 cut(s)	766
PciI	ACATGT	1 cut(s)	762
PciSI	GCTCTTC	2 cut(s)	62, 1350
PctI	GAATGC	1 cut(s)	954
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	166, 1380
PkrI	GCNGC	7 cut(s)	130, 354, 652, 946, 997, 1119, 1246
PleI	GAGTC	4 cut(s)	142, 326, 840, 968
PpsI	GAGTC	4 cut(s)	142, 326, 840, 968
PscI	ACATGT	1 cut(s)	762
PsiI	TTATAA	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	810
PspGI	CCWGG	1 cut(s)	810
PspN4I	GGNNCC	3 cut(s)	883, 1265, 1305
PspPI	GGNCC	2 cut(s)	82, 1304
PstNI	CAGNNNCTG	1 cut(s)	163
PsuI	RGATCY	2 cut(s)	570, 1350
PvuII	CAGCTG	1 cut(s)	653
RsaI	GTAC	3 cut(s)	161, 627, 824
RsaNI	GTAC	3 cut(s)	160, 626, 823
SacI	GAGCTC	1 cut(s)	51
SapI	GCTCTTC	2 cut(s)	62, 1350
SaqAI	TTAA	3 cut(s)	756, 1187, 1290
SatI	GCNGC	7 cut(s)	129, 353, 651, 945, 996, 1118, 1245
Sau3AI	GATC	3 cut(s)	558, 570, 1350
Sau96I	GGNCC	2 cut(s)	82, 1304
SchI	GAGTC	4 cut(s)	142, 326, 841, 969
ScrFI	CCNGG	1 cut(s)	812
SduI	GDGCHC	3 cut(s)	51, 1266, 1345
SfaNI	GCATC	2 cut(s)	39, 994
SfcI	CTRYAG	2 cut(s)	536, 654
SinI	GGWCC	1 cut(s)	1304
Sse9I	AATT	5 cut(s)	282, 514, 687, 1237, 1297
SsiI	CCGC	2 cut(s)	219, 1335
SspMI	CTAG	4 cut(s)	371, 587, 777, 974
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	810
TaaI	ACNGT	2 cut(s)	16, 109
TaqI	TCGA	4 cut(s)	51, 630, 958, 965
TasI	AATT	5 cut(s)	282, 514, 687, 1237, 1297
TfiI	GAWTC	2 cut(s)	166, 1380
Tru1I	TTAA	3 cut(s)	756, 1187, 1290
Tru9I	TTAA	3 cut(s)	756, 1187, 1290
TscAI	CASTG	2 cut(s)	873, 1096
TseFI	GTSAC	2 cut(s)	175, 589
TseI	GCWGC	7 cut(s)	128, 352, 650, 944, 995, 1117, 1244
Tsp45I	GTSAC	2 cut(s)	175, 589
TspDTI	ATGAA	5 cut(s)	384, 607, 732, 984, 1057
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	2 cut(s)	873, 1096
VpaK11BI	GGWCC	1 cut(s)	1304
XapI	RAATTY	2 cut(s)	1237, 1297
XceI	RCATGY	1 cut(s)	766
XmiI	GTMKAC	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	4 cut(s)	371, 587, 777, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.