Rw1G037340

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002046
Physical Location & Seq
Reverse (-)
65005564 .. 65006171
608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037340.1

Sequence Viewer

Length: 357 bp
ATGCAGCAAGCTGTTGCTCGTTTAGCTTACTTTCTTGGTGTAACCATGCTTCTTAGTAGTGTTGCACAAGTTTTAACAGGTGTTGCTGTTGGAGGTGGATGGCAAGTGATGGTAGCTTATATAAATTTGGCTGCTTATTATCTATTTGGGCTCCCACTTGCAATCTTTCTTGGATTTAAAGCAAATTTGGGTCCAATGGGACTTTATGGTGGCATAATATGCGGAAGTGCTCTTCAGATCTTATTCCTATTGATTATGACTTCCAGAATCAACTGGGACAATGAGGTGAAGCAAACGACCAAGCGCATAAAGAAATGGGGGAGCAAGGAAATAAGAACTGAGAAGATAGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

118

Amino Acids

12.89

Weight (kDa)

9.74

Isoelectric Point (pI)

22.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AcsI RAATTY 2 cut(s) 124, 184
AcuI CTGAAG 1 cut(s) 218
AluBI AGCT 3 cut(s) 11, 26, 116
AluI AGCT 3 cut(s) 11, 26, 116
Alw21I GWGCWC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 4, 131
ApoI RAATTY 2 cut(s) 124, 184
AspLEI GCGC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 153
BarI GAAGNNNNNNTAC 2 cut(s) 33, 65
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 2 cut(s) 16, 118
BccI CCATC 2 cut(s) 93, 103
BglII AGATCT 1 cut(s) 237
BisI GCNGC 2 cut(s) 5, 132
BlsI GCNGC 2 cut(s) 6, 133
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 2 cut(s) 152, 192
BmrI ACTGGG 1 cut(s) 283
BmuI ACTGGG 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 278
BseGI GGATG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 16, 118
BsiHKAI GWGCWC 1 cut(s) 232
BslFI GGGAC 2 cut(s) 213, 290
BsmFI GGGAC 2 cut(s) 213, 290
Bsp1286I GDGCHC 2 cut(s) 153, 232
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 152, 192
BspQI GCTCTTC 1 cut(s) 237
BsrI ACTGG 1 cut(s) 278
BssMI GATC 1 cut(s) 237
Bst6I CTCTTC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 53, 339
BstF5I GGATG 1 cut(s) 104
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 1 cut(s) 240
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 23, 219
BstV1I GCAGC 2 cut(s) 16, 118
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BtsCI GGATG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 191
CviAII CATG 1 cut(s) 46
CviJI RGCY 5 cut(s) 11, 26, 116, 131, 151
CviKI_1 RGCY 5 cut(s) 11, 26, 116, 131, 151
DdeI CTNAG 2 cut(s) 53, 339
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
DraI TTTAAA 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 1 cut(s) 49
FaiI YATR 8 cut(s) 47, 120, 122, 207, 215, 220, 257, 308
FaqI GGGAC 2 cut(s) 213, 290
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 5, 132
FokI GGATG 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 5, 132
GlaI GCGC 1 cut(s) 305
GluI GCNGC 2 cut(s) 5, 132
HhaI GCGC 1 cut(s) 306
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HinfI GANTC 1 cut(s) 267
HphI GGTGA 1 cut(s) 298
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 4, 65, 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 219
HpyF3I CTNAG 2 cut(s) 53, 339
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 1 cut(s) 304
Kzo9I GATC 1 cut(s) 237
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 156, 321
LpnPI CCDG 3 cut(s) 63, 259, 277
Lsp1109I GCAGC 2 cut(s) 16, 118
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 2 cut(s) 224, 355
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 2 cut(s) 153, 232
MluCI AATT 2 cut(s) 124, 184
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 2 cut(s) 86, 277
MseI TTAA 2 cut(s) 74, 177
MwoI GCNNNNNNNGC 2 cut(s) 23, 219
NdeII GATC 1 cut(s) 237
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 152, 192
PciSI GCTCTTC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 267
PkrI GCNGC 2 cut(s) 6, 133
PspN4I GGNNCC 2 cut(s) 152, 192
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 2 cut(s) 74, 177
SatI GCNGC 2 cut(s) 5, 132
Sau3AI GATC 1 cut(s) 237
Sau96I GGNCC 1 cut(s) 191
SduI GDGCHC 2 cut(s) 153, 232
SetI ASST 7 cut(s) 13, 28, 82, 97, 118, 288, 352
SinI GGWCC 1 cut(s) 191
Sse9I AATT 2 cut(s) 124, 184
SsiI CCGC 1 cut(s) 222
TasI AATT 2 cut(s) 124, 184
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 2 cut(s) 74, 177
Tru9I TTAA 2 cut(s) 74, 177
TseI GCWGC 2 cut(s) 4, 131
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 2 cut(s) 124, 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.