Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002046

Physical Location & Seq

Genomic Coordinates Forward (+)

3272246 .. 3313287

Gene Structure 41042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCAATTGCATTGGGAACACTTTGTGGTCAAGCATATGGTGCAGGCCAAGTTGGTTCACTTGGTATCTATTTGAAGCGCTCATGGATTGTCCTATCCATCACTTCTGTGATCCTTTCATCAGCTTATATATATGCAACTCCAATCCTAATGATCTTAGGCCAAGACCCTCATATAGCTAATCTTGCAGGAAAATATAGCAGGAAGATTCTTCTTGAAATGTTCTCTTCTACTCTCAATTTGTCCACCCAAAAGTTCCTTCAGGCTCAAAGCAAGGTCGGCGTGATCACATGGATGGCCTTTGCAGCTCTCATTGCACAAACCAGTACTAGTCTTCTTCATCTCTTCATCAACGTTTTCAGGTGGGGATTAAGAGGTGCAGCTGCAGCATACAACATAACAAATTGGGGAATTGCAATTGGTCAAGTGATTGCTCTTGGTTCCTTCTCTATATGCACGAACTTTCAGAATTGGGAGCTCATGTTGGTTGGAGTAAATGCTGCCATAAGCATTCGAGTCTCCAATGAACTAGGGCTGGGGCACCCAAGAACCGCAAAGTACTCGGTGTGTGTTGCTGTCTCGCAATCTTTCATGGTTGGGATCGTGTCCATGATTATTATCTTCATTACCAGAAACTACATTCCCATTGTCTTCACAGACAGTGAAGATATGCAACGAGCCGTTGCTCGTTTAGCATACCTTCTTGGTGTAACCATGCTTCTCAATAGTGCTACACAAGTGTTAACAGTTGTTGCTGTTGGAGGTGGATGGCAGGTGATGGTAGCTTATATAAATTTGGGTTGTTATTATTTGTTTGGTCTTCCACTTGCAATCCTTCTTGGGTTTAAAGCAAATCTAGGTGCCATGGGACTATGGGGTGGCATGATGAGTGGTAGTGCTCTTCAAATCATGTTCCTACTGATTCTGACTTCTAGAACCAACTGGGAGAATGAGGTGGAGCAAACCACAAAGCGCATAAGGAAGTGGGGGAACCAAGAAAAGGAGACTCAGAATATAGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

341

Amino Acids

37.13

Weight (kDa)

9.49

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 106	8.3e-17	MatE
MatE	PF01554	143 - 278	1.4e-14	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15630 FvH4_7g30024 FvH4_7g30070 FvH4_7g30070 FvH4_7g30070 FvH4_7g30072 FvH4_7g30073
malus_domestica	MD01G1206400.v1.1 MD07G1277100.v1.1
pyrus_communis	pycom01g21630 pycom07g25200
rosa_chinensis	RchiOBHm_Chr1g0378011 RchiOBHm_Chr1g0378051
rosa_laevigata	RLG00000026477 RLG00000026478
rosa_multiflora	Rmu_co8476257.1_g000001 Rmu_sc0002068.1_g000001 Rmu_sc0002068.1_g000002 Rmu_sc0005268.1_g000013
rosa_roxburghii	Rroxscaffold_156G00440340 Rroxscaffold_156G00440350 Rroxscaffold_156G00440370 Rroxscaffold_156G00440410 Rroxscaffold_4G00280820 Rroxscaffold_4G00280830 Rroxscaffold_4G00280840
rosa_samantha	Rh1AG424600 Rh1AG425000 Rh1AG425100 Rh1BG383700 Rh1BG384300 Rh1BG384600 Rh1CG397400 Rh1CG398000 Rh1CG398100 Rh1CG398200 Rh1CG398600 Rh1DG414700 Rh1DG415500 Rh1DG415600 Rh1DG415700 Rh1DG415900
rosa_wichuraiana	Rw0G014950 Rw1G037320 Rw1G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	763
Acc36I	ACCTGC	1 cut(s)	763
AccB1I	GGYRCC	2 cut(s)	540, 860
AciI	CCGC	1 cut(s)	552
AclI	AACGTT	1 cut(s)	354
AclWI	GGATC	2 cut(s)	106, 608
AcsI	RAATTY	1 cut(s)	793
AcuI	CTGAAG	1 cut(s)	245
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	328, 560
AfeI	AGCGCT	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	1000
AgsI	TTSAA	3 cut(s)	76, 218, 905
AhlI	ACTAGT	1 cut(s)	329
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	7 cut(s)	125, 179, 308, 383, 478, 785, 1019
AluI	AGCT	7 cut(s)	125, 179, 308, 383, 478, 785, 1019
Alw21I	GWGCWC	2 cut(s)	480, 901
Alw26I	GTCTC	3 cut(s)	523, 583, 998
AlwI	GGATC	2 cut(s)	106, 608
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	3 cut(s)	46, 160, 297
ApeKI	GCWGC	5 cut(s)	305, 380, 383, 386, 500
ApoI	RAATTY	1 cut(s)	793
AspLEI	GCGC	2 cut(s)	81, 975
AsuHPI	GGTGA	1 cut(s)	787
BaeGI	GKGCMC	1 cut(s)	543
BanI	GGYRCC	2 cut(s)	540, 860
BanII	GRGCYC	1 cut(s)	480
BarI	GAAGNNNNNNTAC	2 cut(s)	702, 734
BbsI	GAAGAC	3 cut(s)	326, 643, 812
Bbv12I	GWGCWC	2 cut(s)	480, 901
BbvI	GCAGC	5 cut(s)	317, 370, 392, 398, 487
BccI	CCATC	4 cut(s)	107, 289, 762, 772
BceAI	ACGGC	1 cut(s)	665
BcgI	CGANNNNNNTGC	2 cut(s)	543, 577
BclI	TGATCA	1 cut(s)	285
BcoDI	GTCTC	3 cut(s)	523, 583, 998
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	4 cut(s)	330, 530, 857, 933
BfmI	CTRYAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	82
BfuAI	ACCTGC	1 cut(s)	763
BisI	GCNGC	5 cut(s)	306, 381, 384, 387, 501
BlsI	GCNGC	5 cut(s)	307, 382, 385, 388, 502
BmcAI	AGTACT	2 cut(s)	328, 560
BmiI	GGNNCC	4 cut(s)	442, 542, 862, 992
BmrI	ACTGGG	1 cut(s)	952
BmuI	ACTGGG	1 cut(s)	952
BpiI	GAAGAC	3 cut(s)	326, 643, 812
BsaBI	GATNNNNATC	1 cut(s)	617
BsaJI	CCNNGG	1 cut(s)	864
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	1000
Bse1I	ACTGG	2 cut(s)	324, 947
Bse3DI	GCAATG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	617
BseDI	CCNNGG	1 cut(s)	864
BseGI	GGATG	2 cut(s)	300, 773
BseJI	GATNNNNATC	1 cut(s)	617
BseLI	CCNNNNNNNGG	1 cut(s)	1000
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	1022
BseNI	ACTGG	2 cut(s)	324, 947
BseSI	GKGCMC	1 cut(s)	543
BseXI	GCAGC	5 cut(s)	317, 370, 392, 398, 487
BseYI	CCCAGC	1 cut(s)	535
BsgI	GTGCAG	2 cut(s)	63, 399
BshFI	GGCC	3 cut(s)	48, 162, 299
BshNI	GGYRCC	2 cut(s)	540, 860
BsiHKAI	GWGCWC	2 cut(s)	480, 901
BslFI	GGGAC	1 cut(s)	882
BslI	CCNNNNNNNGG	1 cut(s)	1000
BsmAI	GTCTC	3 cut(s)	523, 583, 998
BsmFI	GGGAC	1 cut(s)	882
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	3 cut(s)	48, 162, 299
Bsp1286I	GDGCHC	3 cut(s)	480, 543, 901
Bsp143I	GATC	4 cut(s)	111, 153, 285, 600
Bsp19I	CCATGG	1 cut(s)	864
BspACI	CCGC	1 cut(s)	552
BspANI	GGCC	3 cut(s)	48, 162, 299
BspCNI	CTCAG	1 cut(s)	1021
BspLI	GGNNCC	4 cut(s)	442, 542, 862, 992
BspMAI	CTGCAG	1 cut(s)	388
BspMI	ACCTGC	1 cut(s)	763
BspPI	GGATC	2 cut(s)	106, 608
BspQI	GCTCTTC	1 cut(s)	906
BspT107I	GGYRCC	2 cut(s)	540, 860
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	324, 947
BssECI	CCNNGG	1 cut(s)	864
BssMI	GATC	4 cut(s)	111, 153, 285, 600
BssT1I	CCWWGG	1 cut(s)	864
Bst4CI	ACNGT	2 cut(s)	662, 748
Bst6I	CTCTTC	3 cut(s)	232, 350, 906
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	46, 1021
BstDEI	CTNAG	2 cut(s)	157, 1008
BstDSI	CCRYGG	1 cut(s)	864
BstF5I	GGATG	2 cut(s)	300, 773
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	2 cut(s)	81, 975
BstKTI	GATC	4 cut(s)	114, 156, 288, 603
BstMAI	GTCTC	3 cut(s)	523, 583, 998
BstMBI	GATC	4 cut(s)	111, 153, 285, 600
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 185, 279, 305, 314, 386, 692
BstSFI	CTRYAG	1 cut(s)	384
BstSLI	GKGCMC	1 cut(s)	543
BstV1I	GCAGC	5 cut(s)	317, 370, 392, 398, 487
BstV2I	GAAGAC	3 cut(s)	326, 643, 812
BsuRI	GGCC	3 cut(s)	48, 162, 299
BtgI	CCRYGG	1 cut(s)	864
BtsCI	GGATG	2 cut(s)	300, 773
BtsIMutI	CAGTG	1 cut(s)	667
BveI	ACCTGC	1 cut(s)	763
Cac8I	GCNNGC	2 cut(s)	46, 1021
CfoI	GCGC	2 cut(s)	81, 975
Csp6I	GTAC	2 cut(s)	327, 559
CviAII	CATG	9 cut(s)	84, 291, 481, 592, 610, 715, 865, 883, 910
CviQI	GTAC	2 cut(s)	327, 559
DdeI	CTNAG	2 cut(s)	157, 1008
DpnI	GATC	4 cut(s)	113, 155, 287, 602
DpnII	GATC	4 cut(s)	111, 153, 285, 600
DraI	TTTAAA	1 cut(s)	847
DraIII	CACNNNGTG	1 cut(s)	26
Eam1104I	CTCTTC	3 cut(s)	232, 350, 906
EarI	CTCTTC	3 cut(s)	232, 350, 906
Ecl136II	GAGCTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	864
Eco24I	GRGCYC	1 cut(s)	480
Eco47III	AGCGCT	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	864
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	9 cut(s)	87, 294, 484, 595, 613, 718, 868, 886, 913
FaqI	GGGAC	1 cut(s)	882
FatI	CATG	9 cut(s)	83, 290, 480, 591, 609, 714, 864, 882, 909
FauNDI	CATATG	1 cut(s)	37
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	5 cut(s)	306, 381, 384, 387, 501
FokI	GGATG	2 cut(s)	307, 780
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	5 cut(s)	306, 381, 384, 387, 501
FspBI	CTAG	4 cut(s)	330, 530, 857, 933
GlaI	GCGC	2 cut(s)	80, 974
GluI	GCNGC	5 cut(s)	306, 381, 384, 387, 501
GsaI	CCCAGC	1 cut(s)	539
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	48, 162, 299
HhaI	GCGC	2 cut(s)	81, 975
Hin1II	CATG	9 cut(s)	87, 294, 484, 595, 613, 718, 868, 886, 913
Hin6I	GCGC	2 cut(s)	79, 973
HinP1I	GCGC	2 cut(s)	79, 973
HincII	GTYRAC	1 cut(s)	744
HindII	GTYRAC	1 cut(s)	744
HinfI	GANTC	4 cut(s)	208, 516, 922, 1006
HpaI	GTTAAC	1 cut(s)	744
HphI	GGTGA	1 cut(s)	787
Hpy166II	GTNNAC	3 cut(s)	59, 246, 744
Hpy188I	TCNGA	3 cut(s)	468, 927, 1011
Hpy188III	TCNNGA	2 cut(s)	215, 933
Hpy8I	GTNNAC	3 cut(s)	59, 246, 744
HpyAV	CCTTC	4 cut(s)	269, 454, 710, 845
HpyCH4III	ACNGT	2 cut(s)	662, 748
HpyCH4IV	ACGT	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 185, 279, 305, 314, 386, 692
HpyF3I	CTNAG	2 cut(s)	157, 1008
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	9 cut(s)	87, 294, 484, 595, 613, 718, 868, 886, 913
HspAI	GCGC	2 cut(s)	79, 973
Ksp22I	TGATCA	1 cut(s)	285
KspAI	GTTAAC	1 cut(s)	744
Kzo9I	GATC	4 cut(s)	111, 153, 285, 600
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	2 cut(s)	475, 958
Lsp1109I	GCAGC	5 cut(s)	317, 370, 392, 398, 487
MaeI	CTAG	4 cut(s)	330, 530, 857, 933
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	709
MalI	GATC	4 cut(s)	113, 155, 287, 602
MboI	GATC	4 cut(s)	111, 153, 285, 600
MfeI	CAATTG	2 cut(s)	6, 417
MhlI	GDGCHC	3 cut(s)	480, 543, 901
MluCI	AATT	7 cut(s)	6, 238, 403, 411, 417, 469, 793
MlyI	GAGTC	2 cut(s)	525, 1000
MmeI	TCCRAC	2 cut(s)	469, 739
MnlI	CCTC	4 cut(s)	180, 368, 755, 946
MseI	TTAA	3 cut(s)	371, 743, 846
MslI	CAYNNNNRTG	2 cut(s)	107, 293
MspA1I	CMGCKG	1 cut(s)	383
MunI	CAATTG	2 cut(s)	6, 417
Mva1269I	GAATGC	1 cut(s)	510
MwoI	GCNNNNNNNGC	7 cut(s)	41, 185, 279, 305, 314, 386, 692
NcoI	CCATGG	1 cut(s)	864
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	4 cut(s)	111, 153, 285, 600
NlaIII	CATG	9 cut(s)	87, 294, 484, 595, 613, 718, 868, 886, 913
NlaIV	GGNNCC	4 cut(s)	442, 542, 862, 992
OliI	CACNNNNGTG	1 cut(s)	107
PaqCI	CACCTGC	1 cut(s)	763
PciSI	GCTCTTC	1 cut(s)	906
PctI	GAATGC	1 cut(s)	510
PfeI	GAWTC	2 cut(s)	208, 922
PkrI	GCNGC	5 cut(s)	307, 382, 385, 388, 502
PleI	GAGTC	2 cut(s)	524, 1000
PpsI	GAGTC	2 cut(s)	524, 1000
Psp124BI	GAGCTC	1 cut(s)	480
Psp1406I	AACGTT	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	535
PspN4I	GGNNCC	4 cut(s)	442, 542, 862, 992
PstI	CTGCAG	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	2 cut(s)	328, 560
RsaNI	GTAC	2 cut(s)	327, 559
RseI	CAYNNNNRTG	2 cut(s)	107, 293
SacI	GAGCTC	1 cut(s)	480
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	3 cut(s)	371, 743, 846
SatI	GCNGC	5 cut(s)	306, 381, 384, 387, 501
Sau3AI	GATC	4 cut(s)	111, 153, 285, 600
ScaI	AGTACT	2 cut(s)	328, 560
SchI	GAGTC	2 cut(s)	525, 1000
SduI	GDGCHC	3 cut(s)	480, 543, 901
SfcI	CTRYAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	2 cut(s)	107, 293
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	7 cut(s)	6, 238, 403, 411, 417, 469, 793
SsiI	CCGC	1 cut(s)	552
SspMI	CTAG	4 cut(s)	330, 530, 857, 933
SstI	GAGCTC	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	864
TaaI	ACNGT	2 cut(s)	662, 748
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	514
TasI	AATT	7 cut(s)	6, 238, 403, 411, 417, 469, 793
TatI	WGTACW	2 cut(s)	326, 558
TfiI	GAWTC	2 cut(s)	208, 922
Tru1I	TTAA	3 cut(s)	371, 743, 846
Tru9I	TTAA	3 cut(s)	371, 743, 846
TscAI	CASTG	1 cut(s)	667
TseI	GCWGC	5 cut(s)	305, 380, 383, 386, 500
TspDTI	ATGAA	6 cut(s)	108, 329, 337, 540, 580, 613
TspRI	CASTG	1 cut(s)	667
XapI	RAATTY	1 cut(s)	793
XbaI	TCTAGA	1 cut(s)	932
XspI	CTAG	4 cut(s)	330, 530, 857, 933
ZrmI	AGTACT	2 cut(s)	328, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.