Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000156

Orthogroup ID

OG0002046

Physical Location & Seq

Genomic Coordinates Forward (+)

67658 .. 70357

Gene Structure 2700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_156G00440350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGAAACACAAACAGTTCCCTTACTGAGCATCAAGGCCGAGCCGGAGCGCGACTATGCTCCCGTGAAGAGCTTCAGGGGAGGGTCTGTCGGTTGGTGGGAAGGAGACGGTGAAGCTGTGGAAAGTTGCAGCTCCGGTGGCTTTTACGACTCTTTTTCACAAGGTATGGCAAATGCACTTGGAACTCTTTGTGGTCAAGCATATGGAGCAGGCCAAGTAGACTCACTTGGTATCTATATGCAGCGCTCCTGCATTATCCTAGCCATCACTTGTTTCCTCCTTTCATCACTTTACATTTTCGCCACTCCATTCCTAAAGATTTTAGGCCAAGAAGACAATATAGCCGAGTTTGCTGGAAAATATAGTCTGTTGATAATCCCTCAGATGTTCTCCTTTTCCATCAATTTGCCCACCCAAAAGTTCCTACAGGCTCAGAGCAAGGTGGGGATCATCACATGGATCTCCTTTGTGGCTCTAGTCACACACACAGGAATTCTGTATCTCTTCATTAGCGTACTTGACTGGGGGCTGAATGGTGCAGCTGTAGCTTATAATATCACATATTGGGAAGTTGCAATTTGTCAGTTTGTGTATGCTGTATTTTTGTGCAAGGAAGGTTGGACTGGATTTTCATGGTTGGCATTCAAAGACATGTGGGCTTTTGCTAGGCTGTCCCTTGCCTCATGTATGATGTTTTGCCTGGAGATGTGGTACACTATGAGTCTGAACATTCTTGCCGGTCAACTTGAAAATGCAGTGATTGCTCTTGGTTCCTTTTCTATATGCTTGAACTTTCAGAGTTGGGAAATCATGTTTTTGGCAGGAATAAATGCTGCTATAAGCATTCGAGTCTCGAATGAACTAGGGATGGGGCATCCCAGAGCTGCCAAATACTCCATCTGCGTTGCAGTCTTACAATCTCTCGTCGTTGGGATATTGTCTATGACTTTTATCTTCATAAGTAGAGACTATATTGCCAGTGTTTTCACCGACAGCAAAGTTATGCAGCAAGCTGTTGCTCGTTTAGCTTACTTTCTTGGTGTAACCATGCTTCTTAGTAGTGTTGCACAAGTTTTAACAGGTGTTGCTGTTGGAGGTGGATGGCAAGGACTTTATGGTGGCATAATATGTGGAAGCGCTCTTCAGATCTTATTCCTATTGATTATGACTTCCAGAACCAACTGGGACAATGAGGTGAAGCAAACGACCAAGCGCATAAAGAAATGGGGGAGCAAGGAAATAAGAACTGAGAAGATAGTTGAGGCTCATCTGCCAACATGCTCCTCCCACACTCATCTGTGTTCGAATATCAAGGGGCAAGCTGAGCAGCTGATAACATGGCAGCCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

450

Amino Acids

49.53

Weight (kDa)

6.52

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	51 - 167	9e-22	MatE
MatE	PF01554	228 - 369	1.4e-18	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15630 FvH4_7g30024 FvH4_7g30070 FvH4_7g30070 FvH4_7g30070 FvH4_7g30072 FvH4_7g30073
malus_domestica	MD01G1206400.v1.1 MD07G1277100.v1.1
pyrus_communis	pycom01g21630 pycom07g25200
rosa_chinensis	RchiOBHm_Chr1g0378011 RchiOBHm_Chr1g0378051
rosa_laevigata	RLG00000026477 RLG00000026478
rosa_multiflora	Rmu_co8476257.1_g000001 Rmu_sc0002068.1_g000001 Rmu_sc0002068.1_g000002 Rmu_sc0005268.1_g000013
rosa_roxburghii	Rroxscaffold_156G00440340 Rroxscaffold_156G00440350 Rroxscaffold_156G00440370 Rroxscaffold_156G00440410 Rroxscaffold_4G00280820 Rroxscaffold_4G00280830 Rroxscaffold_4G00280840
rosa_samantha	Rh1AG424600 Rh1AG425000 Rh1AG425100 Rh1BG383700 Rh1BG384300 Rh1BG384600 Rh1CG397400 Rh1CG398000 Rh1CG398100 Rh1CG398200 Rh1CG398600 Rh1DG414700 Rh1DG415500 Rh1DG415600 Rh1DG415700 Rh1DG415900
rosa_wichuraiana	Rw0G014950 Rw1G037320 Rw1G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	51
AclWI	GGATC	2 cut(s)	455, 467
AcsI	RAATTY	1 cut(s)	492
AcuI	CTGAAG	2 cut(s)	58, 1127
AfaI	GTAC	2 cut(s)	516, 713
AfeI	AGCGCT	2 cut(s)	245, 1138
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	3 cut(s)	646, 749, 790
AjnI	CCWGG	1 cut(s)	699
Alw26I	GTCTC	3 cut(s)	99, 856, 960
AlwI	GGATC	2 cut(s)	455, 467
Aor51HI	AGCGCT	2 cut(s)	245, 1138
AoxI	GGCC	3 cut(s)	36, 211, 325
ApeKI	GCWGC	8 cut(s)	129, 241, 539, 833, 884, 1006, 1327, 1342
ApoI	RAATTY	1 cut(s)	492
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	4 cut(s)	51, 246, 1139, 1215
AsuHPI	GGTGA	3 cut(s)	122, 979, 1207
AsuII	TTCGAA	1 cut(s)	1304
BarI	GAAGNNNNNNTAC	2 cut(s)	1035, 1067
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	7 cut(s)	141, 253, 551, 820, 871, 1018, 1339
BccI	CCATC	5 cut(s)	272, 407, 862, 905, 1095
BciT130I	CCWGG	1 cut(s)	701
BcoDI	GTCTC	3 cut(s)	99, 856, 960
BfaI	CTAG	4 cut(s)	260, 476, 666, 863
BfmI	CTRYAG	2 cut(s)	425, 543
BfoI	RGCGCY	2 cut(s)	247, 1140
BglII	AGATCT	1 cut(s)	1146
BisI	GCNGC	8 cut(s)	130, 242, 540, 834, 885, 1007, 1328, 1343
BlpI	GCTNAGC	1 cut(s)	1323
BlsI	GCNGC	8 cut(s)	131, 243, 541, 835, 886, 1008, 1329, 1344
Bme1390I	CCNGG	1 cut(s)	701
BmiI	GGNNCC	1 cut(s)	772
BmrFI	CCNGG	1 cut(s)	701
BmrI	ACTGGG	2 cut(s)	532, 1192
BmsI	GCATC	2 cut(s)	39, 883
BmuI	ACTGGG	2 cut(s)	532, 1192
BpiI	GAAGAC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	722
Bpu1102I	GCTNAGC	1 cut(s)	1323
Bpu14I	TTCGAA	1 cut(s)	1304
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	4 cut(s)	72, 102, 695, 725
Bse118I	RCCGGY	1 cut(s)	737
Bse1I	ACTGG	5 cut(s)	527, 628, 978, 1187, 1346
BseBI	CCWGG	1 cut(s)	701
BseGI	GGATG	3 cut(s)	873, 874, 1106
BseMII	CTCAG	5 cut(s)	17, 395, 446, 1239, 1314
BseNI	ACTGG	5 cut(s)	527, 628, 978, 1187, 1346
BseRI	GAGGAG	1 cut(s)	1273
BseXI	GCAGC	7 cut(s)	141, 253, 551, 820, 871, 1018, 1339
BsgI	GTGCAG	1 cut(s)	558
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	38, 213, 327
BsiSI	CCGG	3 cut(s)	44, 135, 738
BslFI	GGGAC	2 cut(s)	658, 1199
BsmAI	GTCTC	3 cut(s)	99, 856, 960
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	658, 1199
BsmI	GAATGC	2 cut(s)	641, 843
BsnI	GGCC	3 cut(s)	38, 213, 327
Bsp119I	TTCGAA	1 cut(s)	1304
Bsp143I	GATC	3 cut(s)	447, 459, 1146
Bsp1720I	GCTNAGC	1 cut(s)	1323
BspANI	GGCC	3 cut(s)	38, 213, 327
BspCNI	CTCAG	5 cut(s)	18, 394, 445, 1240, 1315
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	772
BspPI	GGATC	2 cut(s)	455, 467
BspQI	GCTCTTC	2 cut(s)	62, 1146
BspT104I	TTCGAA	1 cut(s)	1304
BsrFI	RCCGGY	1 cut(s)	737
BsrI	ACTGG	5 cut(s)	527, 628, 978, 1187, 1346
BssAI	RCCGGY	1 cut(s)	737
BssMI	GATC	3 cut(s)	447, 459, 1146
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	2 cut(s)	16, 110
Bst6I	CTCTTC	3 cut(s)	62, 509, 1146
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstBI	TTCGAA	1 cut(s)	1304
BstC8I	GCNNGC	3 cut(s)	211, 1011, 1320
BstDEI	CTNAG	6 cut(s)	26, 381, 432, 1055, 1248, 1323
BstF5I	GGATG	3 cut(s)	873, 874, 1106
BstFNI	CGCG	1 cut(s)	51
BstH2I	RGCGCY	2 cut(s)	247, 1140
BstHHI	GCGC	4 cut(s)	51, 246, 1139, 1215
BstKTI	GATC	3 cut(s)	450, 462, 1149
BstMAI	GTCTC	3 cut(s)	99, 856, 960
BstMBI	GATC	3 cut(s)	447, 459, 1146
BstMWI	GCNNNNNNNGC	7 cut(s)	138, 206, 350, 545, 761, 1025, 1324
BstNI	CCWGG	1 cut(s)	701
BstNSI	RCATGY	2 cut(s)	655, 1281
BstSCI	CCNGG	1 cut(s)	699
BstSFI	CTRYAG	2 cut(s)	425, 543
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	7 cut(s)	141, 253, 551, 820, 871, 1018, 1339
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	2 cut(s)	459, 1146
BstYI	RGATCY	2 cut(s)	459, 1146
BsuRI	GGCC	3 cut(s)	38, 213, 327
BtsCI	GGATG	3 cut(s)	873, 874, 1106
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	762, 985
Cac8I	GCNNGC	3 cut(s)	211, 1011, 1320
CfoI	GCGC	4 cut(s)	51, 246, 1139, 1215
Cfr10I	RCCGGY	1 cut(s)	737
Csp6I	GTAC	2 cut(s)	515, 712
CviAII	CATG	8 cut(s)	456, 633, 652, 684, 811, 1048, 1278, 1338
CviQI	GTAC	2 cut(s)	515, 712
DdeI	CTNAG	6 cut(s)	26, 381, 432, 1055, 1248, 1323
DpnI	GATC	3 cut(s)	449, 461, 1148
DpnII	GATC	3 cut(s)	447, 459, 1146
Eam1104I	CTCTTC	3 cut(s)	62, 509, 1146
EarI	CTCTTC	3 cut(s)	62, 509, 1146
Eco47III	AGCGCT	2 cut(s)	245, 1138
Eco57I	CTGAAG	2 cut(s)	58, 1127
EcoRI	GAATTC	1 cut(s)	492
EcoRII	CCWGG	1 cut(s)	699
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	8 cut(s)	459, 636, 655, 687, 814, 1051, 1281, 1341
FaqI	GGGAC	2 cut(s)	658, 1199
FatI	CATG	8 cut(s)	455, 632, 651, 683, 810, 1047, 1277, 1337
FauNDI	CATATG	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	8 cut(s)	130, 242, 540, 834, 885, 1007, 1328, 1343
FokI	GGATG	3 cut(s)	861, 880, 1113
Fsp4HI	GCNGC	8 cut(s)	130, 242, 540, 834, 885, 1007, 1328, 1343
FspBI	CTAG	4 cut(s)	260, 476, 666, 863
GlaI	GCGC	4 cut(s)	50, 245, 1138, 1214
GluI	GCNGC	8 cut(s)	130, 242, 540, 834, 885, 1007, 1328, 1343
GsuI	CTGGAG	1 cut(s)	722
HaeII	RGCGCY	2 cut(s)	247, 1140
HaeIII	GGCC	3 cut(s)	38, 213, 327
HapII	CCGG	3 cut(s)	44, 135, 738
HhaI	GCGC	4 cut(s)	51, 246, 1139, 1215
Hin1II	CATG	8 cut(s)	459, 636, 655, 687, 814, 1051, 1281, 1341
Hin6I	GCGC	4 cut(s)	49, 244, 1137, 1213
HinP1I	GCGC	4 cut(s)	49, 244, 1137, 1213
HincII	GTYRAC	1 cut(s)	743
HindII	GTYRAC	1 cut(s)	743
HinfI	GANTC	4 cut(s)	149, 221, 721, 849
HpaII	CCGG	3 cut(s)	44, 135, 738
HphI	GGTGA	3 cut(s)	122, 979, 1207
Hpy166II	GTNNAC	3 cut(s)	220, 714, 743
Hpy188I	TCNGA	5 cut(s)	384, 435, 726, 798, 1146
Hpy188III	TCNNGA	2 cut(s)	853, 1173
Hpy8I	GTNNAC	3 cut(s)	220, 714, 743
Hpy99I	CGWCG	1 cut(s)	929
HpyAV	CCTTC	2 cut(s)	95, 608
HpyCH4III	ACNGT	2 cut(s)	16, 110
HpyF10VI	GCNNNNNNNGC	7 cut(s)	138, 206, 350, 545, 761, 1025, 1324
HpyF3I	CTNAG	6 cut(s)	26, 381, 432, 1055, 1248, 1323
Hsp92II	CATG	8 cut(s)	459, 636, 655, 687, 814, 1051, 1281, 1341
HspAI	GCGC	4 cut(s)	49, 244, 1137, 1213
Kzo9I	GATC	3 cut(s)	447, 459, 1146
LguI	GCTCTTC	2 cut(s)	62, 1146
LmnI	GCTCC	7 cut(s)	46, 64, 137, 206, 251, 1230, 1286
Lsp1109I	GCAGC	7 cut(s)	141, 253, 551, 820, 871, 1018, 1339
LweI	GCATC	2 cut(s)	39, 883
MaeI	CTAG	4 cut(s)	260, 476, 666, 863
MaeIII	GTNAC	2 cut(s)	478, 1042
MalI	GATC	3 cut(s)	449, 461, 1148
MboI	GATC	3 cut(s)	447, 459, 1146
MboII	GAAGA	6 cut(s)	79, 344, 496, 946, 1133, 1264
MflI	RGATCY	2 cut(s)	459, 1146
MluCI	AATT	3 cut(s)	403, 492, 576
MlyI	GAGTC	4 cut(s)	143, 215, 730, 858
MmeI	TCCRAC	2 cut(s)	599, 1072
MnlI	CCTC	8 cut(s)	74, 287, 390, 691, 1088, 1186, 1255, 1294
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	2 cut(s)	1076, 1351
MspA1I	CMGCKG	2 cut(s)	542, 1330
MspI	CCGG	3 cut(s)	44, 135, 738
MspR9I	CCNGG	1 cut(s)	701
Mva1269I	GAATGC	2 cut(s)	641, 843
MvaI	CCWGG	1 cut(s)	701
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	7 cut(s)	138, 206, 350, 545, 761, 1025, 1324
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	3 cut(s)	447, 459, 1146
NlaIII	CATG	8 cut(s)	459, 636, 655, 687, 814, 1051, 1281, 1341
NlaIV	GGNNCC	1 cut(s)	772
NmeAIII	GCCGAG	2 cut(s)	64, 370
NmuCI	GTSAC	1 cut(s)	478
NspI	RCATGY	2 cut(s)	655, 1281
NspV	TTCGAA	1 cut(s)	1304
PciI	ACATGT	1 cut(s)	651
PciSI	GCTCTTC	2 cut(s)	62, 1146
PctI	GAATGC	2 cut(s)	641, 843
PdmI	GAANNNNTTC	1 cut(s)	71
PkrI	GCNGC	8 cut(s)	131, 243, 541, 835, 886, 1008, 1329, 1344
PleI	GAGTC	4 cut(s)	143, 215, 729, 857
PpsI	GAGTC	4 cut(s)	143, 215, 729, 857
PscI	ACATGT	1 cut(s)	651
PsiI	TTATAA	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	1 cut(s)	772
PsuI	RGATCY	2 cut(s)	459, 1146
PvuII	CAGCTG	2 cut(s)	542, 1330
RsaI	GTAC	2 cut(s)	516, 713
RsaNI	GTAC	2 cut(s)	515, 712
SapI	GCTCTTC	2 cut(s)	62, 1146
SaqAI	TTAA	2 cut(s)	1076, 1351
SatI	GCNGC	8 cut(s)	130, 242, 540, 834, 885, 1007, 1328, 1343
Sau3AI	GATC	3 cut(s)	447, 459, 1146
SchI	GAGTC	4 cut(s)	143, 215, 730, 858
ScrFI	CCNGG	1 cut(s)	701
SfaNI	GCATC	2 cut(s)	39, 883
SfcI	CTRYAG	2 cut(s)	425, 543
SfuI	TTCGAA	1 cut(s)	1304
Sse9I	AATT	3 cut(s)	403, 492, 576
SspMI	CTAG	4 cut(s)	260, 476, 666, 863
StyD4I	CCNGG	1 cut(s)	699
TaaI	ACNGT	2 cut(s)	16, 110
TaqI	TCGA	3 cut(s)	847, 854, 1304
TasI	AATT	3 cut(s)	403, 492, 576
Tru1I	TTAA	2 cut(s)	1076, 1351
Tru9I	TTAA	2 cut(s)	1076, 1351
TscAI	CASTG	2 cut(s)	762, 985
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	8 cut(s)	129, 241, 539, 833, 884, 1006, 1327, 1342
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	5 cut(s)	273, 496, 621, 873, 946
TspRI	CASTG	2 cut(s)	762, 985
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	2 cut(s)	655, 1281
XmiI	GTMKAC	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	4 cut(s)	260, 476, 666, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.